PRGDB00071016 (Mdo.24146)

Mdo.24146
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	46614753 (CN493894)
Gene Class	Unknown
Domain Type	Ser-Thr Kinase
Gene Species	Malus x domestica
	Comment?

Mdfw2007p06.y1 Mdfw Malus x domestica cDNA clone Mdfw2007p06 5' similar to TR:O24436 O24436 RECEPTOR KINASE-LIKE PROTEIN. ;, mRNA sequence

DNA Sequence

AGCCTGTAGTGCACTGTGATTTGAAGCCTAGCAACATCCTTCTTGACGAAGACATGGTTGCACATGTGGGGGACTTTGGTCTTGCTAAAATTTTGGCAGGAAACAAGGATGCAACACAAACCAGAACTCTTGGTACACTTGGTTATGTTGTACCAGAGTATGGTTCAGCAGGAAAAGTGTCAACAAGAGGTGATGTGTATAGCTATGGAATCATGTTGTTTGAAATAATTGCAAGAAAGAGGCCAACAGATGGAATGTTTACGGAAGAACTGACCCTGAGGAAATGGATAAATGCGTCGCTCCCTGACGGTATTCTAGGAGTAGTGGATATTGGTTTATTGAGCACAGAAGAGGGAAGAGAGATGAATGCCGCNAAACGTATCATTTTATCAATCATGGACATCGGCTTGAGATGTTCCCAAGAAGTGCCAGAAGAAAAAATGGATATCAAAGAAGTGTTGCGGAAACCCCATAAAATAAAATCGGCACTTGGA

Protein sequences

Name	Description	Sequence
Mdo.24146	translated coding region predicted by ESTScan from UniGene Mdo.24146	XPVVHCDLKPSNILLDEDMVAHVGDFGLAKILAGNKDATQTRTLGTLGYVVPEYGSAGKVSTRGDVYSYGIMLFEIIARKRPTDGMFTEELTLRKWINASLPDGILGVVDIGLLSTEEGREMNAAKRIILSIMDIGLRCSQEVPEEKMDIKEVLRKPHKIKSALG

Domains

Domain	Start-End	Description	Sequence
ProfileScan: PS50011 IPR000719	1-161	PROTEIN_KINASE_DOM Protein kinase, catalytic domain	XPVVHCDLKPSNILLDEDMVAHVGDFGLAKILAGNKDATQTRTLGTLGYVVPEYGSAGKVSTRGDVYSYGIMLFEIIARKRPTDGMFTEELTLRKWINASLPDGILGVVDIGLLSTEEGREMNAAKRIILSIMDIGLRCSQEVPEEKMDIKEVLRKPHKIK
HMMPanther: PTHR24420:SF474	2-161	SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED	PVVHCDLKPSNILLDEDMVAHVGDFGLAKILAGNKDATQTRTLGTLGYVVPEYGSAGKVSTRGDVYSYGIMLFEIIARKRPTDGMFTEELTLRKWINASLPDGILGVVDIGLLSTEEGREMNAAKRIILSIMDIGLRCSQEVPEEKMDIKEVLRKPHKIK
HMMPanther: PTHR24420	2-161	FAMILY NOT NAMED,FAMILY NOT NAMED	PVVHCDLKPSNILLDEDMVAHVGDFGLAKILAGNKDATQTRTLGTLGYVVPEYGSAGKVSTRGDVYSYGIMLFEIIARKRPTDGMFTEELTLRKWINASLPDGILGVVDIGLLSTEEGREMNAAKRIILSIMDIGLRCSQEVPEEKMDIKEVLRKPHKIK
superfamily: SSF56112 IPR011009	2-157	Protein kinase-like (PK-like) Protein kinase-like domain	PVVHCDLKPSNILLDEDMVAHVGDFGLAKILAGNKDATQTRTLGTLGYVVPEYGSAGKVSTRGDVYSYGIMLFEIIARKRPTDGMFTEELTLRKWINASLPDGILGVVDIGLLSTEEGREMNAAKRIILSIMDIGLRCSQEVPEEKMDIKEVLRKP
Gene3D: G3DSA:1.10.510.10	2-159	no description	PVVHCDLKPSNILLDEDMVAHVGDFGLAKILAGNKDATQTRTLGTLGYVVPEYGSAGKVSTRGDVYSYGIMLFEIIARKRPTDGMFTEELTLRKWINASLPDGILGVVDIGLLSTEEGREMNAAKRIILSIMDIGLRCSQEVPEEKMDIKEVLRKPHK
PatternScan: PS00108 IPR008271	3-15	PROTEIN_KINASE_ST Serine/threonine-protein kinase, active site	VVHCDLKPSNILL
HMMPfam: PF00069 IPR017442	3-86	Pkinase,Ser-thr Serine/threonine-protein kinase-like domain	VVHCDLKPSNILLDEDMVAHVGDFGLAKILAGNKDATQTRTLGTLGYVVPEYGSAGKVSTRGDVYSYGIMLFEIIARKRPTDGM

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Analyses

Blast

Blast matches against Reference R-Genes. Show