PRGDB00071019 (Mdo.24273)

Mdo.24273
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	226765937 (GO521853)
Gene Class	Unknown
Domain Type	Ser-Thr Kinase
Gene Species	Malus x domestica
	Comment?

NP_566341.1| protein kinase family [Arabidopsis thaliana] gb|AAM61567.1| putative receptor ser thr protein kinase [Arabidopsis thaliana], mRNA sequence

DNA Sequence

CACGAGGGGATTGGGAAAAAAGATCAGCCATTTGCTTGGGTACTGCCAGGGGTCTTACGTATCTTCATGAAGAACTGGTGCCACATATTGTACATAGAGATATCAAGGCTAGTAATTTACTTTTAGACAGAGAATTTAACCCGAAAATAGGAGACTTTGGGTTGGCTAAACTCTTCCCTGATGATATCACTCATATCAGCACAAGGATTGCGGGCACAACTGGTTATTTGGCACCAGAATATGCATTGGGAGGTCAGTTAACCCTCAAGGCCGATGTTTACAGTTTTGGGGTTCTCGTTCTTGAAATAGTATGTGGAAGAAGCAGTGCCAAGGGAGACTGGGGTGGGGCAGAAAAGTTTCTGCTTGAATGGGCATGGCAGCTCCATGAAGAAGGGAGACTATTGGAGCTAGCTGACCCGGAGATGGGGGAATTTCCGGAGGAAGAAGTCCTTAGGTACATGAAGGTAGCATTTTTCTGCACCCAAGCAGCAGCAAACCGAAGACCAAAGATGAGCCAGGTTCTTGACATGCTCTCGAGAAACATAAGACTCAACGAGAAACAACTTACAGCCCCAGGTTTCTTCAACAGTTCAGGGAGCCTGAGCGGACCTTCAGGTAAAAAGTCATTTTCCGAAACCACTACCAGTCAGATGAGTTCCGTCCCCGACACTAT

Protein sequences

Name	Description	Sequence
Mdo.24273	translated coding region predicted by ESTScan from UniGene Mdo.24273	XRGDWEKRSAICLGTARGLTYLHEELVPHIVHRDIKASNLLLDREFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTLKADVYSFGVLVLEIVCGRSSAKGDWGGAEKFLLEWAWQLHEEGRLLELADPEMGEFPEEEVLRYMKVAFFCTQAAANRRPKMSQVLDMLSRNIRLNEKQLTAPGFFNSSGSLSGPSGKKSFSETTTSQMSSVPDTX

Domains

Domain	Start-End	Description	Sequence
ProfileScan: PS50011 IPR000719	1-184	PROTEIN_KINASE_DOM Protein kinase, catalytic domain	XRGDWEKRSAICLGTARGLTYLHEELVPHIVHRDIKASNLLLDREFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTLKADVYSFGVLVLEIVCGRSSAKGDWGGAEKFLLEWAWQLHEEGRLLELADPEMGEFPEEEVLRYMKVAFFCTQAAANRRPKMSQVLDMLSRNIRL
HMMSmart: SM00219 IPR020635	3-178	Tyrosine kinase, catalytic domain Tyrosine-protein kinase, catalytic domain	GDWEKRSAICLGTARGLTYLHEELVPHIVHRDIKASNLLLDREFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTLKADVYSFGVLVLEIVCGRSSAKGDWGGAEKFLLEWAWQLHEEGRLLELADPEMGEFPEEEVLRYMKVAFFCTQAAANRRPKMSQVLDML
superfamily: SSF56112 IPR011009	4-178	Protein kinase-like (PK-like) Protein kinase-like domain	DWEKRSAICLGTARGLTYLHEELVPHIVHRDIKASNLLLDREFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTLKADVYSFGVLVLEIVCGRSSAKGDWGGAEKFLLEWAWQLHEEGRLLELADPEMGEFPEEEVLRYMKVAFFCTQAAANRRPKMSQVLDML
Gene3D: G3DSA:1.10.510.10	4-212	no description	DWEKRSAICLGTARGLTYLHEELVPHIVHRDIKASNLLLDREFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTLKADVYSFGVLVLEIVCGRSSAKGDWGGAEKFLLEWAWQLHEEGRLLELADPEMGEFPEEEVLRYMKVAFFCTQAAANRRPKMSQVLDMLSRNIRLNEKQLTAPGFFNSSGSLSGPSGKKSFSE
HMMPanther: PTHR24420:SF679	4-194	SUBFAMILY NOT NAMED	DWEKRSAICLGTARGLTYLHEELVPHIVHRDIKASNLLLDREFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTLKADVYSFGVLVLEIVCGRSSAKGDWGGAEKFLLEWAWQLHEEGRLLELADPEMGEFPEEEVLRYMKVAFFCTQAAANRRPKMSQVLDMLSRNIRLNEKQLTAPGF
HMMPanther: PTHR24420	4-194	FAMILY NOT NAMED,FAMILY NOT NAMED	DWEKRSAICLGTARGLTYLHEELVPHIVHRDIKASNLLLDREFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTLKADVYSFGVLVLEIVCGRSSAKGDWGGAEKFLLEWAWQLHEEGRLLELADPEMGEFPEEEVLRYMKVAFFCTQAAANRRPKMSQVLDMLSRNIRLNEKQLTAPGF
HMMPfam: PF00069 IPR017442	5-113	Pkinase,Ser-thr Serine/threonine-protein kinase-like domain	WEKRSAICLGTARGLTYLHEELVPHIVHRDIKASNLLLDREFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTLKADVYSFGVLVLEIVCGRSSAKGD
HMMSmart: SM00220 IPR002290	5-178	Serine/Threonine protein kinases, catalytic Serine/threonine- / dual-specificity protein kinas	WEKRSAICLGTARGLTYLHEELVPHIVHRDIKASNLLLDREFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTLKADVYSFGVLVLEIVCGRSSAKGDWGGAEKFLLEWAWQLHEEGRLLELADPEMGEFPEEEVLRYMKVAFFCTQAAANRRPKMSQVLDML
PatternScan: PS00108 IPR008271	30-42	PROTEIN_KINASE_ST Serine/threonine-protein kinase, active site	IVHRDIKASNLLL
Seg: seg	192-211	seg	PGFFNSSGSLSGPSGKKSFS

List of Contributions

There has not been any contribution yet.

Add a Contribution

Analyses

Blast

Blast matches against Reference R-Genes. Show