PRGDB00071022 (Mdo.24622)
| Mdo.24622 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 52023770 (CV186503) |
| Gene Class | CNL |
| Domain Type | NBS, LRR |
| Gene Species | Malus x domestica |
DNA Sequence
TTTAATCCAAGAAAATATAATACACATTATTTATGTTGTGTAAAACAATAACATGATGATTATACAAAAAAACAACACCACAAAATATCTTAAGACTCAAGAGAGTTTGAAATAAATAGTATTACAAAAACTCTTATGATGAAACATAGAAATTGGACAGAACCAAGAACGAAACATTTATTGAGAAAAACAATGCAACACAAATCAGAAACATGTTGCTCCAACATTTATTGAGGAAAGACAGGTCTCATAACTGAGGCTTTTCGAGCCAATTCAGACTGGATTTTTCTTTTGTCACCTTGATTTTGTCTCTGGCTAAGAAGGAATCCCAGAAAGGTTTCTTCTCTTCATCACAAATCACTTCCTCTAACTGCTCGTCAAGATCCCACACTGATAGAGGCAACTCCTCCAATCTTGAGCATTGTCCCATGTTGATCTTTCTTAAACCTCTCATCTTACCAATGCCTTCAGGCAACTTCCTAATGCCGAAACAATTATACATGTCAAGGCAGCGCAACTTAGTGAGGTTTTCAATTGAAACCGGAAGCCTTACCAACTCTGTACAGGACCTTAGTCTCAATACATCCAATTTCTTCAGATTTCCGATCTCTTCAGGCAAGCAAGATAGCTGATGGCAGTTGGTGATACTAAGCACCTTCATATGAACAAGATCACAGAGCTCGGCAGGCAGTTTCACCAAATCATCACAATAGTCGATATTCATTTCCTCTAGACCTGGCCAGGCATCAAAAATTTTGAATGGAACATTTTGGAAAGCTTGACCCATATT
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Mdo.24622 | translated coding region predicted by ESTScan from UniGene Mdo.24622 | NMGQAFQNVPFKIFDAWPGLEEMNIDYCDDLVKLPAELCDLVHMKVLSITNCHQLSCLPEEIGNLKKLDVLRLRSCTELVRLPVSIENLTKLRCLDMYNCFGIRKLPEGIGKMRGLRKINMGQCSRLEELPLSVWDLDEQLEEVICDEEKKPFWDSFLARDKIKVTKEKSSLNWLEKPQL |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52058 | 5-148 | L domain-like,LRR | AFQNVPFKIFDAWPGLEEMNIDYCDDLVKLPAELCDLVHMKVLSITNCHQLSCLPEEIGNLKKLDVLRLRSCTELVRLPVSIENLTKLRCLDMYNCFGIRKLPEGIGKMRGLRKINMGQCSRLEELPLSVWDLDEQLEEVICDE |
| Gene3D: G3DSA:3.80.10.10 | 6-136 | no description | FQNVPFKIFDAWPGLEEMNIDYCDDLVKLPAELCDLVHMKVLSITNCHQLSCLPEEIGNLKKLDVLRLRSCTELVRLPVSIENLTKLRCLDMYNCFGIRKLPEGIGKMRGLRKINMGQCSRLEELPLSVWD |
| HMMPanther: PTHR23155:SF239 | 20-139 | DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS), PUTATIVE,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS) | LEEMNIDYCDDLVKLPAELCDLVHMKVLSITNCHQLSCLPEEIGNLKKLDVLRLRSCTELVRLPVSIENLTKLRCLDMYNCFGIRKLPEGIGKMRGLRKINMGQCSRLEELPLSVWDLDE |
| HMMPanther: PTHR23155 | 20-139 | FAMILY NOT NAMED,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | LEEMNIDYCDDLVKLPAELCDLVHMKVLSITNCHQLSCLPEEIGNLKKLDVLRLRSCTELVRLPVSIENLTKLRCLDMYNCFGIRKLPEGIGKMRGLRKINMGQCSRLEELPLSVWDLDE |
| HMMPfam: PF00560 IPR001611
|
45-65 | LRR_1 Leucine-rich repeat
|
KVLSITNCHQLSCLPEEIGNL |
List of Contributions
There has not been any contribution yet.
