PRGDB00071030 (Mdo.24983)
| Mdo.24983 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 71826044 (DT003436) |
| Gene Class | Unknown |
| Domain Type | LRR |
| Gene Species | Malus x domestica |
DNA Sequence
CGAATTCCGTTGCTGTCGGGTTCATTTTATATAAATTCCTGCACATCTCTTTCCGAGTTTTATGAGCTTCCCAGGGATATAAATGAATTATCATTGGTTAGTTGCACGAGACTTGTGAGTCTACCAACCAACATTTGTAAGTTGAAATATCTCAAGGGACTCAATCTTTCCGGATGCTTTAAACTTGAAAACTTCCCAGAGATCTTGGAGCCAATGGAACATTTGAAGTCCTTAAATTTAAGTGGAACAGCGGTTCAAGAGCTACACTCATTAATCGAGTTTCTCCCTGCTCTCAAAAGACTTATACTAAAACGTTGCAAAAGGCTTTCAAGTATGCCAAAGAGCATTTGTAAGTTGAAATATCTCGAGGTACTCAATCTCTCCAGCTGCTGTAAATTTGAAGACTTACCAGAGATCTTGGAGCCAATGGAACATTTGAAGTTTTTAAATTTTAGAAAAACAGCGGTTCAAGAGCTACACTCATTAATTGAGTTTCTCCCTGCTCTCAAAATACTTAACCTACAACGTTGCAAAAGGCTTTCAAGTATCCCAAAGAGCATTTGTAAGTTGAAATATCTTGAGGAACTCAACCTCTCTTGGTGCTCCAAACTTGAAAACTTCCCAGAGATTTTGGAGCCAATGGAACATTTGAAGTCTTTAAATTTAAGTGGAACAGCGGTTCAAGTGCTACACTCATCAGTCGAGTTTCTCCCTGCTCTG
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Mdo.24983 | translated coding region predicted by ESTScan from UniGene Mdo.24983 | RIPLLSGSFYINSCTSLSEFYELPRDINELSLVSCTRLVSLPTNICKLKYLKGLNLSGCFKLENFPEILEPMEHLKSLNLSGTAVQELHSLIEFLPALKRLILKRCKRLSSMPKSICKLKYLEVLNLSSCCKFEDLPEILEPMEHLKFLNFRKTAVQELHSLIEFLPALKILNLQRCKRLSSIPKSICKLKYLEELNLSWCSKLENFPEILEPMEHLKSLNLSGTAVQVLHSSVEFLPAL |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| Gene3D: G3DSA:3.80.10.10 | 22-119 | no description | ELPRDINELSLVSCTRLVSLPTNICKLKYLKGLNLSGCFKLENFPEILEPMEHLKSLNLSGTAVQELHSLIEFLPALKRLILKRCKRLSSMPKSICKL |
| HMMPanther: PTHR23155 | 22-240 | FAMILY NOT NAMED,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | ELPRDINELSLVSCTRLVSLPTNICKLKYLKGLNLSGCFKLENFPEILEPMEHLKSLNLSGTAVQELHSLIEFLPALKRLILKRCKRLSSMPKSICKLKYLEVLNLSSCCKFEDLPEILEPMEHLKFLNFRKTAVQELHSLIEFLPALKILNLQRCKRLSSIPKSICKLKYLEELNLSWCSKLENFPEILEPMEHLKSLNLSGTAVQVLHSSVEFLPAL |
| superfamily: SSF52047 | 24-240 | RNI-like,LRR | PRDINELSLVSCTRLVSLPTNICKLKYLKGLNLSGCFKLENFPEILEPMEHLKSLNLSGTAVQELHSLIEFLPALKRLILKRCKRLSSMPKSICKLKYLEVLNLSSCCKFEDLPEILEPMEHLKFLNFRKTAVQELHSLIEFLPALKILNLQRCKRLSSIPKSICKLKYLEELNLSWCSKLENFPEILEPMEHLKSLNLSGTAVQVLHSSVEFLPAL |
| HMMPfam: PF00560 IPR001611
|
51-67 | LRR_1 Leucine-rich repeat
|
LKGLNLSGCFKLENFPE |
| HMMPfam: PF13855 | 96-153 | LRR_8,Leucine rich repeat | PALKRLILKRCKRLSSMPKSICKLKYLEVLNLSSCCKFEDLPEILEPMEHLKFLNFRK |
| Seg: seg | 98-109 | seg | LKRLILKRCKRL |
| Gene3D: G3DSA:3.80.10.10 | 120-189 | no description | KYLEVLNLSSCCKFEDLPEILEPMEHLKFLNFRKTAVQELHSLIEFLPALKILNLQRCKRLSSIPKSICK |
| HMMPfam: PF13855 | 167-225 | LRR_8,Leucine rich repeat | PALKILNLQRCKRLSSIPKSICKLKYLEELNLSWCSKLENFPEILEPMEHLKSLNLSGT |
| Gene3D: G3DSA:3.80.10.10 | 190-240 | no description | LKYLEELNLSWCSKLENFPEILEPMEHLKSLNLSGTAVQVLHSSVEFLPAL |
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