PRGDB00071105 (Mdo.29387)

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Mdo.29387
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 226802068 (GO557478)
Gene Class TNL
Domain Type NBS, TIR, LRR
Gene Species Malus x domestica

Comment?

CAD36200.1| TIR-NBS disease resistance protein [Populus balsamifera subsp. trichocarpa], mRNA sequence

DNA Sequence

GCGCCGTGTGATTTTATTGGACAGGTcaacaacaaccacaacaacaaAGAGAAGACAAAAGAAGAAAATGAAAGTTACCCATAAGCTTGATTTTGTAAAACCTTCCCAGCTAGATCTGCAACCTCTGCAAGTGGCTTCCTCCATCTTTCCATCATGGCCGGGGGTTCAGTTTTCCGGTGGCCAACCAATGGCTCCGGCATGGTTCCCGTCCGCCTCCTCACATGGGAACGGATCACATCGTAGAAGAACGGTATAACCACATGGTCCGAGCTGGCCCTCTTGTGGTCAACGATCTCGACAAGCTCGTTAAGGCACCATCTGGATGACGCGTAATCTTTCGAACACACAATGACAGAAGTTCGGGACATTTGGATTGCTTGCTTCAGTCCTGATTTGATATCTTCTCCCGTCTTGAGTTCATCGTCGTCTCGAAATGTGCGATATCCTGCGCTTATCAAAGCTGTGTAGAGGTGGTCGGTAAACGTCTTGCGAGTGTCTTCACCTCTAAAGCTCAAGAACACGTCGTAATGATAACCCCGACGAGTGTTGGAATCAGAGGAAGCTCCTTGAGTTGTTCTCACAA


Protein sequences

Name Description Sequence
Mdo.29387 translated coding region predicted by ESTScan from UniGene Mdo.29387

XVRTTQGASSDSNTRRGYHYDVFLSFRGEDTRKTFTDHLYTALISAGYRTFRDDDELKTGEDIKSGLKQAIQMSRTSVIVCSKDYASSRWCLNELVEIVDHKRASSDHVVIPFFYDVIRSHVRRRTGTMPEPLVGHRKTEPPAMMERWRKPLAEVADLAGKVLQNQAYG

Domains

Domain Start-End Description Sequence

superfamily: SSF52200
IPR000157
8-161 Toll/Interleukin receptor TIR domain
Toll-Interleukin receptor

ASSDSNTRRGYHYDVFLSFRGEDTRKTFTDHLYTALISAGYRTFRDDDELKTGEDIKSGLKQAIQMSRTSVIVCSKDYASSRWCLNELVEIVDHKRASSDHVVIPFFYDVIRSHVRRRTGTMPEPLVGHRKTEPPAMMERWRKPLAEVADLAGK

Gene3D: G3DSA:3.40.50.10140
15-154 no description

RRGYHYDVFLSFRGEDTRKTFTDHLYTALISAGYRTFRDDDELKTGEDIKSGLKQAIQMSRTSVIVCSKDYASSRWCLNELVEIVDHKRASSDHVVIPFFYDVIRSHVRRRTGTMPEPLVGHRKTEPPAMMERWRKPLAE

ProfileScan: PS50104
IPR000157
18-158 TIR
Toll-Interleukin receptor

YHYDVFLSFRGEDTRKTFTDHLYTALISAGYRTFRDDDELKTGEDIKSGLKQAIQMSRTSVIVCSKDYASSRWCLNELVEIVDHKRASSDHVVIPFFYDVIRSHVRRRTGTMPEPLVGHRKTEPPAMMERWRKPLAEVADL

HMMSmart: SM00255
IPR000157
19-158 Toll
Toll/interleukin-1 receptor homology (TIR) domain

HYDVFLSFRGEDTRKTFTDHLYTALISAGYRTFRDDDELKTGEDIKSGLKQAIQMSRTSVIVCSKDYASSRWCLNELVEIVDHKRASSDHVVIPFFYDVIRSHVRRRTGTMPEPLVGHRKTEPPAMMERWRKPLAEVADL

HMMPfam: PF01582
IPR000157
22-150 TIR
Toll-Interleukin receptor

VFLSFRGEDTRKTFTDHLYTALISAGYRTFRDDDELKTGEDIKSGLKQAIQMSRTSVIVCSKDYASSRWCLNELVEIVDHKRASSDHVVIPFFYDVIRSHVRRRTGTMPEPLVGHRKTEPPAMMERWRK

HMMPanther: PTHR23155:SF297
31-160 DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE

TRKTFTDHLYTALISAGYRTFRDDDELKTGEDIKSGLKQAIQMSRTSVIVCSKDYASSRWCLNELVEIVDHKRASSDHVVIPFFYDVIRSHVRRRTGTMPEPLVGHRKTEPPAMMERWRKPLAEVADLAG

HMMPanther: PTHR23155
31-160 FAMILY NOT NAMED,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

TRKTFTDHLYTALISAGYRTFRDDDELKTGEDIKSGLKQAIQMSRTSVIVCSKDYASSRWCLNELVEIVDHKRASSDHVVIPFFYDVIRSHVRRRTGTMPEPLVGHRKTEPPAMMERWRKPLAEVADLAG






List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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