PRGDB00071109 (Mdo.30096)

Mdo.30096
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	226814059 (GO567754)
Gene Class	Unknown
Domain Type	LRR
Gene Species	Malus x domestica
	Comment?

AAP31049.1| putative receptor kinase [Hordeum vulgare], mRNA sequence

DNA Sequence

ttttttttttttttttttCTTGAAATCAATTTCATATTCATAATTTCATATCATGAATGCTAACAAGGTAGTCATCCGTAAGCCCCGAGCATGTACGAAACAAACTATAATAGCAAAGTTTAAAGGTTATTTAGCTACATATATTGGCGGCCTGGCCTACAACTAGATAGGCTTACAGGGAGTGAGAGGCTTTCCGCATAAGCCTGTGTTTCCGGAGTAAGAACTCTTGGGAAAGTCACTGAGCGGTTTGCCCTCTGGAATTTTCCCCACGAGATGATTGTTTGATAAATTCAATTCCTCCAGATTCCCCAGCTTCAGAAACTCGTCTGGAATTTTCCCCGAAAAGCGGTTTTGCTGCAACTCGAGCACCAGTAGCATGCTCAAGTTTCCCAAGGATTCTGGGATTGCTCCTTCAAGCTTGTTGTTCGATAGGTTAACCTCTCGGAGCGCAATCAAATCTCCAAAGTTTGTTGGTATGCTTCCGGTGAGACTATTATTCGCGAGCAATAAAAGCTTGAGAGATGGCATTTTTAAAACTGGAATTGGCCCCTCAAAAAAGTTATTGTGCAACCATATAGTTACAACGGATGATAAATTGGCCATTGAAGGGTGGAAGCTTCCCAGACAAACGGTTTCTTG

Protein sequences

Name	Description	Sequence
Mdo.30096	translated coding region predicted by ESTScan from UniGene Mdo.30096	QETVCLGSFHPSMANLSSVVTIWLHNNFFEGPIPVLKMPSLKLLLLANNSLTGSIPTNFGDLIALREVNLSNNKLEGAIPESLGNLSMLLVLELQQNRFSGKIPDEFLKLGNLEELNLSNNHLVGKIPEGKPLSDFPKSSYSGNTGLCGKPLTPCKPI

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR24420	7-151	FAMILY NOT NAMED,FAMILY NOT NAMED	GSFHPSMANLSSVVTIWLHNNFFEGPIPVLKMPSLKLLLLANNSLTGSIPTNFGDLIALREVNLSNNKLEGAIPESLGNLSMLLVLELQQNRFSGKIPDEFLKLGNLEELNLSNNHLVGKIPEGKPLSDFPKSSYSGNTGLCGKP
Gene3D: G3DSA:3.80.10.10	9-154	no description	FHPSMANLSSVVTIWLHNNFFEGPIPVLKMPSLKLLLLANNSLTGSIPTNFGDLIALREVNLSNNKLEGAIPESLGNLSMLLVLELQQNRFSGKIPDEFLKLGNLEELNLSNNHLVGKIPEGKPLSDFPKSSYSGNTGLCGKPLTP
superfamily: SSF52058	11-156	L domain-like,LRR	PSMANLSSVVTIWLHNNFFEGPIPVLKMPSLKLLLLANNSLTGSIPTNFGDLIALREVNLSNNKLEGAIPESLGNLSMLLVLELQQNRFSGKIPDEFLKLGNLEELNLSNNHLVGKIPEGKPLSDFPKSSYSGNTGLCGKPLTPCK
Seg: seg	36-51	seg	LKMPSLKLLLLANNSL
HMMSmart: SM00369 IPR003591	38-61	Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype	MPSLKLLLLANNSLTGSIPTNFGD
HMMPfam: PF00560 IPR001611	40-62	LRR_1 Leucine-rich repeat	SLKLLLLANNSLTGSIPTNFGDL
ProfileScan: PS51450 IPR001611	40-63	LRR,Leucine-rich repeat profile. Leucine-rich repeat	SLKLLLLANNSLTGSIPTNFGDLI
HMMSmart: SM00369 IPR003591	62-86	Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype	LIALREVNLSNNKLEGAIPESLGNL
ProfileScan: PS51450 IPR001611	64-87	LRR,Leucine-rich repeat profile. Leucine-rich repeat	ALREVNLSNNKLEGAIPESLGNLS
FPrintScan: PR00019	65-78	LEURICHRPT,Leucine-rich repeat signature	LREVNLSNNKLEGA
HMMPfam: PF13855	65-123	LRR_8,Leucine rich repeat	LREVNLSNNKLEGAIPESLGNLSMLLVLELQQNRFSGKIPDEFLKLGNLEELNLSNNHL
ProfileScan: PS51450 IPR001611	88-109	LRR,Leucine-rich repeat profile. Leucine-rich repeat	MLLVLELQQNRFSGKIPDEFLK
Seg: seg	106-123	seg	EFLKLGNLEELNLSNNHL
FPrintScan: PR00019	110-123	LEURICHRPT,Leucine-rich repeat signature	LGNLEELNLSNNHL
HMMSmart: SM00369 IPR003591	110-143	Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype	LGNLEELNLSNNHLVGKIPEGKPLSDFPKSSYSG
ProfileScan: PS51450 IPR001611	112-134	LRR,Leucine-rich repeat profile. Leucine-rich repeat	NLEELNLSNNHLVGKIPEGKPLS

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Analyses

Blast

Blast matches against Reference R-Genes. Show