PRGDB00071138 (Mtr.25)

From PRG Wiki
Jump to: navigation, search
Mtr.25
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 27407709 (CA920779)
Gene Class Unknown
Domain Type Ser-Thr Kinase
Gene Species Medicago truncatula

Comment?

EST638497 MTUS Medicago truncatula cDNA clone MTUS-32C6, mRNA sequence

DNA Sequence

tatacaatatacagtttacacggcatgcatgcatatattatatattttattttttgacacatatataGGGTGGCTTAAGAGTCACTCTAGCCATACCACATGTTACATTTTACACTTAATTAAAAACCACTCTTCTAATAATCCACATTAATCAAGTCTTTATGCTCTTAACTGGAGCCTGTTTCTTCTGGTTTACACTAATTGCTCTAGCTTTCACCTTATTATTTGATGAAACATTTTTAGTAGATTTTGATGATATTGGCCAGTGTCCACTAGTAACAGCCATATCTTTAAACTGTTCTAGGCTTTCAAGTGTTTCAACAATCATCGCCATTCTTGGTCTGTCTTTAGGATGCAGACTTATACATTGCAATGCCAAATGTGCAATCTCTTTTGCACCTTTGACAGAATATTGTCCCGCAAGCCTTGGATCCATAATGTACCTCAATCTTCTACTGCTACTCAAGTAAGGCTTTGTCCAATCCACAATGTTTTGTTCTGTCTTTGGTCTTGTTTTGTCTGTTGCTCTTCTTCCTGTGAGCAGTTCTAGCAGGACTACGCCGAAGCTATAGACATCACTTTTTGTAGTCAAGTGACCTGTTGAGATGTACTCTGGGGCTGCATATCCATAAGTTCCCATAACTCTGGTTGTAACATGTGACTTTGATCCTTCTGGGTCCATCTTTGCAAGTCCAAAATCTGATAATTTTTGCTGTGAAGTCTGAAATCAGTAAGACATTGGAAGTCTTGAAATCTCTGTAAATGACTGGTT


Protein sequences

Name Description Sequence
Mtr.25 translated coding region predicted by ESTScan from UniGene Mtr.25

NQSFTEISRLPMSYXFQTSQQKLSDFGLAKMDPEGSKSHVTTRVMGTYGYAAPEYISTGHLTTKSDVYSFGVVLLELLTGRRATDKTRPKTEQNIVDWTKPYLSSSRRLRYIMDPRLAGQYSVKGAKEIAHLALQCISLHPKDRPRMAMIVETLESLEQFKDMAVTSGHWPISSKSTKNVSSNNKVKARAISVNQKKQAPVKSIKT

Domains

Domain Start-End Description Sequence

ProfileScan: PS50011
IPR000719
1-157 PROTEIN_KINASE_DOM
Protein kinase, catalytic domain

NQSFTEISRLPMSYXFQTSQQKLSDFGLAKMDPEGSKSHVTTRVMGTYGYAAPEYISTGHLTTKSDVYSFGVVLLELLTGRRATDKTRPKTEQNIVDWTKPYLSSSRRLRYIMDPRLAGQYSVKGAKEIAHLALQCISLHPKDRPRMAMIVETLESL

HMMPfam: PF00069
IPR017442
18-152 Pkinase,Ser-thr
Serine/threonine-protein kinase-like domain

TSQQKLSDFGLAKMDPEGSKSHVTTRVMGTYGYAAPEYISTGHLTTKSDVYSFGVVLLELLTGRRATDKTRPKTEQNIVDWTKPYLSSSRRLRYIMDPRLAGQYSVKGAKEIAHLALQCISLHPKDRPRMAMIVE

Gene3D: G3DSA:1.10.510.10
21-196 no description

QKLSDFGLAKMDPEGSKSHVTTRVMGTYGYAAPEYISTGHLTTKSDVYSFGVVLLELLTGRRATDKTRPKTEQNIVDWTKPYLSSSRRLRYIMDPRLAGQYSVKGAKEIAHLALQCISLHPKDRPRMAMIVETLESLEQFKDMAVTSGHWPISSKSTKNVSSNNKVKARAISVNQK

HMMPanther: PTHR24420:SF861
22-159 SUBFAMILY NOT NAMED

KLSDFGLAKMDPEGSKSHVTTRVMGTYGYAAPEYISTGHLTTKSDVYSFGVVLLELLTGRRATDKTRPKTEQNIVDWTKPYLSSSRRLRYIMDPRLAGQYSVKGAKEIAHLALQCISLHPKDRPRMAMIVETLESLEQ

HMMPanther: PTHR24420
22-159 FAMILY NOT NAMED,FAMILY NOT NAMED

KLSDFGLAKMDPEGSKSHVTTRVMGTYGYAAPEYISTGHLTTKSDVYSFGVVLLELLTGRRATDKTRPKTEQNIVDWTKPYLSSSRRLRYIMDPRLAGQYSVKGAKEIAHLALQCISLHPKDRPRMAMIVETLESLEQ

superfamily: SSF56112
IPR011009
22-162 Protein kinase-like (PK-like)
Protein kinase-like domain

KLSDFGLAKMDPEGSKSHVTTRVMGTYGYAAPEYISTGHLTTKSDVYSFGVVLLELLTGRRATDKTRPKTEQNIVDWTKPYLSSSRRLRYIMDPRLAGQYSVKGAKEIAHLALQCISLHPKDRPRMAMIVETLESLEQFKD

Seg: seg
173-187 seg

SSKSTKNVSSNNKVK






List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


Personal tools
Namespaces

Variants
Actions
PRGDB
META-SPECIES
Wiki
Toolbox