PRGDB00071581 (Nta.6136)

Nta.6136
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	76868860 (DV159853)
Gene Class	Unknown
Domain Type
Gene Species	Nicotiana tabacum
	Comment?

KP1B.101J04F.050722T7 KP1B Nicotiana tabacum cDNA clone KP1B.101J04, mRNA sequence

DNA Sequence

GGAACTGGTGCATGGGAAAGTGCACTCACAAACACGTTGTCTCCTGGTGATCGCATTGTATCTTTCCTCATCGGTCAGTTCAGTCTGCTTTGGATTGATCAACAGAAACGTCTCAACTTTGATGTTGATGTTGTTGAGAGTGACTGGGGCCAAGGTGCAGACCTTGAAGCTTTAGCCTCCAAAATCGCAGCTGATAAGTCGCATACTATTAAGGCGATTTGCATTGTGCATAATGAGACAGCCACTGGAGTTACCAACAACTTGGCTACTGTAAGGAAAATACTCGATCACTACCAGCATCCTGCTCTCTTACTTGTTGATGGAGTGTCCTCAATTTGTGCACTTGATTTTCGCATGGATGAATGGGGCGTTGATGTGGCGCTTACTGGTTCGCAGAAAGCACTTTCCCTTCCCACCGGACTCGGGATAGTCTGTGCTAGTCCCAAGGCTCTTGAGGCCGCCAAAACTGCAAAATCAGTGAGAGTTTTCTTTGACTGGAGTGATTACCTTAAGTTCTACAAGATGGGAACTTATTGGCCATATACTCCTTCAATCCAACTTTTGTATGGACTCCGAGCTGCTCTCGACCTTCTTTTTGAGGAAGGTCTCGAAAATGTTATTGCAAGACACGCTCGCTTGGGCAAAGCAACAAGACTTGCCGTGGAGGCATGGGGATTGAAGAACTGTACTCAGAAGGAGGAATGGTTCAGTGACACCGTCACAGCTGTGGTTGTTCCTCCATATATCGATAGTGTTGAAATCGTGAAAAGGGCATGGAAGCGATACAACTTAAGCTTAGGTCTTGGCCTAAACAAAGTGGCAGGAAAGGTTTTCAGAATAGGACATCTTGGCAACTTGAATGAGTTGCAACTACTGGGATGTCTTGCTGGAGTGGAAATGGTACTTAAGGATGTTGGTTATCCAGTGAAG

Protein sequences

Name	Description	Sequence
Nta.6136	translated coding region predicted by ESTScan from UniGene Nta.6136	GTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFDVDVVESDWGQGADLEALASKIAADKSHTIKAICIVHNETATGVTNNLATVRKILDHYQHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEAAKTAKSVRVFFDWSDYLKFYKMGTYWPYTPSIQLLYGLRAALDLLFEEGLENVIARHARLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVVVPPYIDSVEIVKRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLLGCLAGVEMVLKDVGYPVK

Domains

Domain	Start-End	Description	Sequence
superfamily: SSF53383 IPR015424	1-309	PLP-dependent transferases Pyridoxal phosphate-dependent transferase, major d	GTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFDVDVVESDWGQGADLEALASKIAADKSHTIKAICIVHNETATGVTNNLATVRKILDHYQHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEAAKTAKSVRVFFDWSDYLKFYKMGTYWPYTPSIQLLYGLRAALDLLFEEGLENVIARHARLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVVVPPYIDSVEIVKRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLLGCLAGVEMVLKDVGYPV
HMMPanther: PTHR21152:SF7	1-310	SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED	GTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFDVDVVESDWGQGADLEALASKIAADKSHTIKAICIVHNETATGVTNNLATVRKILDHYQHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEAAKTAKSVRVFFDWSDYLKFYKMGTYWPYTPSIQLLYGLRAALDLLFEEGLENVIARHARLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVVVPPYIDSVEIVKRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLLGCLAGVEMVLKDVGYPVK
HMMPanther: PTHR21152	1-310	FAMILY NOT NAMED,AMINOTRANSFERASE CLASS V	GTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFDVDVVESDWGQGADLEALASKIAADKSHTIKAICIVHNETATGVTNNLATVRKILDHYQHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEAAKTAKSVRVFFDWSDYLKFYKMGTYWPYTPSIQLLYGLRAALDLLFEEGLENVIARHARLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVVVPPYIDSVEIVKRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLLGCLAGVEMVLKDVGYPVK
Gene3D: G3DSA:3.40.640.10 IPR015421	1-189	no description Pyridoxal phosphate-dependent transferase, major r	GTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFDVDVVESDWGQGADLEALASKIAADKSHTIKAICIVHNETATGVTNNLATVRKILDHYQHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEAAKTAKSVRVFFDWSDYLKFYKMGTYWPYTPSIQLLY
HMMPfam: PF00266 IPR000192	8-256	Aminotran_5 Aminotransferase, class V/Cysteine desulfurase	ALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFDVDVVESDWGQGADLEALASKIAADKSHTIKAICIVHNETATGVTNNLATVRKILDHYQHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEAAKTAKSVRVFFDWSDYLKFYKMGTYWPYTPSIQLLYGLRAALDLLFEEGLENVIARHARLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVVVPPYIDSVEIVK
PatternScan: PS00595 IPR020578	124-144	AA_TRANSFER_CLASS_5 Aminotransferase class-V pyridoxal-phosphate bindi	VDVALTGSQKALSLPTGLGIV
Seg: seg	187-198	seg	LLYGLRAALDLL
Gene3D: G3DSA:3.90.1150.10 IPR015422	190-310	no description Pyridoxal phosphate-dependent transferase, major r	GLRAALDLLFEEGLENVIARHARLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVVVPPYIDSVEIVKRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLLGCLAGVEMVLKDVGYPVK

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Analyses

Blast

Blast matches against Reference R-Genes. Show