PRGDB00072779 (Os.55246)

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Os.55246
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 117226079 (CT846104)
Gene Class Unknown
Domain Type
Gene Species Oryza sativa Japonica Group

Comment?

CT846104 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa (indica cultivar-group) cDNA clone CONTIG358, mRNA sequence

DNA Sequence

ACGAGTTCGAGGAGTTTGAGATCGACCAAGAATGGGATGACAAGGAGGATGGTGATGAGGCCATCCAGCAATGGGAGGATGACTGGGATGATGACGACGTCAATGACGACTTCTCGCTTCAGCTGAGGAAGGAGCTGGAGGAATGCAACACCCAGAAGATCTGAACTACttttttttCCCAGTTATGTTTAGCTGTAGCACCTATGCTGGGTCAGGCACTTTTGTACCCTTTGTGCCCCATCGCTTTCTCAACCTGCAATGTTCCTACTATACTCCTACTTGTGTGCTGAAACCTGCGATCAAATTTAATTTGTGAAAGGGTTAAAACCAAGTTGGTGaaaaaaaaaaaaaaaaaaaaccctgcctcctccttcgcacgtattacgtgcgaaaaaaaaaaTCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCCTGGGCCGGTGAACATCCCGGACCAGGTGATCCGCGCCATGAGCCGTCAGAACGAGGACTACCGCTCGCCGGCGGTGCCCGCCCTCACCAAGACCCTCCTCGAGGACGTCAAGCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACAAGATCGTGTCGTTCCTGATCGGGCAGTTCAGCCTGCTGTGGATCGACCAGCAGCAACGCCTCAACTTCAACGTGGACGTGGTGGAGAGCGACTGGGGCTACGGCGCCGACCTCGCCGCCCTCGACTACAAGCTCCGCCAGGACCCCTCCCACTCCATCAAGGCCATCTGCATCGTCCACAACGAGACCGCCACTGGAGTCACCAACGACCTTTCCGCCGTCCGCAAAATCCTCGACAAGCACAGGCACCCGGCGCTACTACTGGTGGACGGGGTGTCATCGATATGTGCGTTGGACTTCCGCATGGATGAGTGGGGAGTGGACGTGGCGCTGACGGGTTCGCAGAAGGCGCTCTCGCTGCCGACGGGTCTGGGCATCGTGTGCGCGAGCCCCGGGGGGCTGGAGGCGAGCAAGACGGCCAAGTCGGTGCGGGTCTTCTTCGACTGGAAGGACTACCTCAAGTTCTACAAGATGGGCACCTACTGGCCCTACACCCCATCCATCCAGCTCCTCTACGGCCTCCGCACCGCCCTCGACCTCATCTTCGAGGAAGGCCTCGAGAACGTCATCAAGAGGCACAACCGCCTCGGCACCGCCACCAGGCTGGCCGTGGAGGCGTGGGGGCTCAAGAACTGCACGCAGAAGGAGGAGTGGTTCAGCGACACCGTCACCGCCGTCGTCGTGCCGCCGTACATCGACAGCGCCGAGATCGTGAAGCACGCCTGGAAGCGGTACAACCTCAGCCTCGGCCTCGGCCTCAACAAGGTCGCCGGCAAGGTGTTCAGGATCGGCCACCTCGGCCACCTCAACGAGCTGCAATTGATGGGTGCCCTGAGTGGAGTGGAGATGGTGCTCAAGGACATCGGCTACCCGGTGAAGCTCGGCTCcggcgtggcggcggcggcggcgtacctgtcgaattcgacgccgctcatcccgtgggggggggTGAAGCACAACGAACGAAGGATGGAAAGCAATTCTCAGCAACGATGGTTCTGCCTGCAGGTTGGCGAAACGGAACATCGGCAAATTAATCCTATTGCATATAATTAGGTCTCTGTATGTAAAGTTAAATTTTTATACGCTCCATCGATCAGCTCTATGCTAAGGAGTAAGGAGTATAATTTTGTGAAGGTACTGCAGCTTTTACTTAATTAATCTTGAACCTCGATGTATACAACAGTGAACAGTTAAATTAATCATCATTCCCTAATGCCTCTTAATTTTaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggcccctttggcccccggggggggcccgggacccaattccccccaaaggggggccaaatacccccccccccgggccccttttttaaaacccccgggcgggaaaaacccgggggttccccaatttaaaccccttggaaaaaatcccccttttccccgggggggaaaaaacaaaaaagcccccccccattccccttcccaaaaatttccccccccAAAAGGGAAAAGGGAACCCCCCTTGAAGGGCCCAATAAACCgggggggggggggggTTACCCCCAAGGGGACCCCTAACTTTTGCAGGC


Protein sequences

Name Description Sequence
Os.55246 translated coding region predicted by ESTScan from UniGene Os.55246

MADYVYGPGRNHLFVPGPVNIPDQVIRAMSRQNEDYRSPAVPALTKTLLEDVKQIFKTTTGTPFLFPTTGTGAWESALTNTLSPGDKIVSFLIGQFSLLWIDQQQRLNFNVDVVESDWGYGADLAALDYKLRQDPSHSIKAICIVHNETATGVTNDLSAVRKILDKHRHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPGGLEASKTAKSVRVFFDWKDYLKFYKMGTYWPYTPSIQLLYGLRTALDLIFEEGLENVIKRHNRLGTATRLAVEAWGLKNCTQKEEWFSDTVTAVVVPPYIDSAEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLMGALSGVEMVLKDIGYPVKLGSGVAAAAAXPVEFDAAHPVGGGEAQRTKDGKQFSATMVLPAGWRNGTSAN

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR21152:SF7
1-389 SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED

MADYVYGPGRNHLFVPGPVNIPDQVIRAMSRQNEDYRSPAVPALTKTLLEDVKQIFKTTTGTPFLFPTTGTGAWESALTNTLSPGDKIVSFLIGQFSLLWIDQQQRLNFNVDVVESDWGYGADLAALDYKLRQDPSHSIKAICIVHNETATGVTNDLSAVRKILDKHRHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPGGLEASKTAKSVRVFFDWKDYLKFYKMGTYWPYTPSIQLLYGLRTALDLIFEEGLENVIKRHNRLGTATRLAVEAWGLKNCTQKEEWFSDTVTAVVVPPYIDSAEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLMGALSGVEMVLKDIGYPVKLGSGVAAAAA

HMMPanther: PTHR21152
1-389 FAMILY NOT NAMED,AMINOTRANSFERASE CLASS V

MADYVYGPGRNHLFVPGPVNIPDQVIRAMSRQNEDYRSPAVPALTKTLLEDVKQIFKTTTGTPFLFPTTGTGAWESALTNTLSPGDKIVSFLIGQFSLLWIDQQQRLNFNVDVVESDWGYGADLAALDYKLRQDPSHSIKAICIVHNETATGVTNDLSAVRKILDKHRHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPGGLEASKTAKSVRVFFDWKDYLKFYKMGTYWPYTPSIQLLYGLRTALDLIFEEGLENVIKRHNRLGTATRLAVEAWGLKNCTQKEEWFSDTVTAVVVPPYIDSAEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLMGALSGVEMVLKDIGYPVKLGSGVAAAAA

superfamily: SSF53383
IPR015424
8-378 PLP-dependent transferases
Pyridoxal phosphate-dependent transferase, major d

PGRNHLFVPGPVNIPDQVIRAMSRQNEDYRSPAVPALTKTLLEDVKQIFKTTTGTPFLFPTTGTGAWESALTNTLSPGDKIVSFLIGQFSLLWIDQQQRLNFNVDVVESDWGYGADLAALDYKLRQDPSHSIKAICIVHNETATGVTNDLSAVRKILDKHRHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPGGLEASKTAKSVRVFFDWKDYLKFYKMGTYWPYTPSIQLLYGLRTALDLIFEEGLENVIKRHNRLGTATRLAVEAWGLKNCTQKEEWFSDTVTAVVVPPYIDSAEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLMGALSGVEMVLKDIGYPV

HMMPfam: PF00266
IPR000192
13-330 Aminotran_5
Aminotransferase, class V/Cysteine desulfurase

LFVPGPVNIPDQVIRAMSRQNEDYRSPAVPALTKTLLEDVKQIFKTTTGTPFLFPTTGTGAWESALTNTLSPGDKIVSFLIGQFSLLWIDQQQRLNFNVDVVESDWGYGADLAALDYKLRQDPSHSIKAICIVHNETATGVTNDLSAVRKILDKHRHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPGGLEASKTAKSVRVFFDWKDYLKFYKMGTYWPYTPSIQLLYGLRTALDLIFEEGLENVIKRHNRLGTATRLAVEAWGLKNCTQKEEWFSDTVTAVVVPPYIDSAEIVKHAWKR

Gene3D: G3DSA:3.40.640.10
IPR015421
22-258 no description
Pyridoxal phosphate-dependent transferase, major r

PDQVIRAMSRQNEDYRSPAVPALTKTLLEDVKQIFKTTTGTPFLFPTTGTGAWESALTNTLSPGDKIVSFLIGQFSLLWIDQQQRLNFNVDVVESDWGYGADLAALDYKLRQDPSHSIKAICIVHNETATGVTNDLSAVRKILDKHRHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPGGLEASKTAKSVRVFFDWKDYLKFYKMGTYWPYTPSIQLLY

Seg: seg
58-72 seg

TTTGTPFLFPTTGTG

PatternScan: PS00595
IPR020578
193-213 AA_TRANSFER_CLASS_5
Aminotransferase class-V pyridoxal-phosphate bindi

VDVALTGSQKALSLPTGLGIV

Gene3D: G3DSA:3.90.1150.10
IPR015422
259-384 no description
Pyridoxal phosphate-dependent transferase, major r

GLRTALDLIFEEGLENVIKRHNRLGTATRLAVEAWGLKNCTQKEEWFSDTVTAVVVPPYIDSAEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLMGALSGVEMVLKDIGYPVKLGSGV

Seg: seg
385-390 seg

AAAAAX






List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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