PRGDB00072779 (Os.55246)

Os.55246
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	117226079 (CT846104)
Gene Class	Unknown
Domain Type
Gene Species	Oryza sativa Japonica Group
	Comment?

CT846104 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa (indica cultivar-group) cDNA clone CONTIG358, mRNA sequence

DNA Sequence

ACGAGTTCGAGGAGTTTGAGATCGACCAAGAATGGGATGACAAGGAGGATGGTGATGAGGCCATCCAGCAATGGGAGGATGACTGGGATGATGACGACGTCAATGACGACTTCTCGCTTCAGCTGAGGAAGGAGCTGGAGGAATGCAACACCCAGAAGATCTGAACTACttttttttCCCAGTTATGTTTAGCTGTAGCACCTATGCTGGGTCAGGCACTTTTGTACCCTTTGTGCCCCATCGCTTTCTCAACCTGCAATGTTCCTACTATACTCCTACTTGTGTGCTGAAACCTGCGATCAAATTTAATTTGTGAAAGGGTTAAAACCAAGTTGGTGaaaaaaaaaaaaaaaaaaaaccctgcctcctccttcgcacgtattacgtgcgaaaaaaaaaaTCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCCTGGGCCGGTGAACATCCCGGACCAGGTGATCCGCGCCATGAGCCGTCAGAACGAGGACTACCGCTCGCCGGCGGTGCCCGCCCTCACCAAGACCCTCCTCGAGGACGTCAAGCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACAAGATCGTGTCGTTCCTGATCGGGCAGTTCAGCCTGCTGTGGATCGACCAGCAGCAACGCCTCAACTTCAACGTGGACGTGGTGGAGAGCGACTGGGGCTACGGCGCCGACCTCGCCGCCCTCGACTACAAGCTCCGCCAGGACCCCTCCCACTCCATCAAGGCCATCTGCATCGTCCACAACGAGACCGCCACTGGAGTCACCAACGACCTTTCCGCCGTCCGCAAAATCCTCGACAAGCACAGGCACCCGGCGCTACTACTGGTGGACGGGGTGTCATCGATATGTGCGTTGGACTTCCGCATGGATGAGTGGGGAGTGGACGTGGCGCTGACGGGTTCGCAGAAGGCGCTCTCGCTGCCGACGGGTCTGGGCATCGTGTGCGCGAGCCCCGGGGGGCTGGAGGCGAGCAAGACGGCCAAGTCGGTGCGGGTCTTCTTCGACTGGAAGGACTACCTCAAGTTCTACAAGATGGGCACCTACTGGCCCTACACCCCATCCATCCAGCTCCTCTACGGCCTCCGCACCGCCCTCGACCTCATCTTCGAGGAAGGCCTCGAGAACGTCATCAAGAGGCACAACCGCCTCGGCACCGCCACCAGGCTGGCCGTGGAGGCGTGGGGGCTCAAGAACTGCACGCAGAAGGAGGAGTGGTTCAGCGACACCGTCACCGCCGTCGTCGTGCCGCCGTACATCGACAGCGCCGAGATCGTGAAGCACGCCTGGAAGCGGTACAACCTCAGCCTCGGCCTCGGCCTCAACAAGGTCGCCGGCAAGGTGTTCAGGATCGGCCACCTCGGCCACCTCAACGAGCTGCAATTGATGGGTGCCCTGAGTGGAGTGGAGATGGTGCTCAAGGACATCGGCTACCCGGTGAAGCTCGGCTCcggcgtggcggcggcggcggcgtacctgtcgaattcgacgccgctcatcccgtgggggggggTGAAGCACAACGAACGAAGGATGGAAAGCAATTCTCAGCAACGATGGTTCTGCCTGCAGGTTGGCGAAACGGAACATCGGCAAATTAATCCTATTGCATATAATTAGGTCTCTGTATGTAAAGTTAAATTTTTATACGCTCCATCGATCAGCTCTATGCTAAGGAGTAAGGAGTATAATTTTGTGAAGGTACTGCAGCTTTTACTTAATTAATCTTGAACCTCGATGTATACAACAGTGAACAGTTAAATTAATCATCATTCCCTAATGCCTCTTAATTTTaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggcccctttggcccccggggggggcccgggacccaattccccccaaaggggggccaaatacccccccccccgggccccttttttaaaacccccgggcgggaaaaacccgggggttccccaatttaaaccccttggaaaaaatcccccttttccccgggggggaaaaaacaaaaaagcccccccccattccccttcccaaaaatttccccccccAAAAGGGAAAAGGGAACCCCCCTTGAAGGGCCCAATAAACCgggggggggggggggTTACCCCCAAGGGGACCCCTAACTTTTGCAGGC

Protein sequences

Name	Description	Sequence
Os.55246	translated coding region predicted by ESTScan from UniGene Os.55246	MADYVYGPGRNHLFVPGPVNIPDQVIRAMSRQNEDYRSPAVPALTKTLLEDVKQIFKTTTGTPFLFPTTGTGAWESALTNTLSPGDKIVSFLIGQFSLLWIDQQQRLNFNVDVVESDWGYGADLAALDYKLRQDPSHSIKAICIVHNETATGVTNDLSAVRKILDKHRHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPGGLEASKTAKSVRVFFDWKDYLKFYKMGTYWPYTPSIQLLYGLRTALDLIFEEGLENVIKRHNRLGTATRLAVEAWGLKNCTQKEEWFSDTVTAVVVPPYIDSAEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLMGALSGVEMVLKDIGYPVKLGSGVAAAAAXPVEFDAAHPVGGGEAQRTKDGKQFSATMVLPAGWRNGTSAN

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR21152:SF7	1-389	SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED	MADYVYGPGRNHLFVPGPVNIPDQVIRAMSRQNEDYRSPAVPALTKTLLEDVKQIFKTTTGTPFLFPTTGTGAWESALTNTLSPGDKIVSFLIGQFSLLWIDQQQRLNFNVDVVESDWGYGADLAALDYKLRQDPSHSIKAICIVHNETATGVTNDLSAVRKILDKHRHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPGGLEASKTAKSVRVFFDWKDYLKFYKMGTYWPYTPSIQLLYGLRTALDLIFEEGLENVIKRHNRLGTATRLAVEAWGLKNCTQKEEWFSDTVTAVVVPPYIDSAEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLMGALSGVEMVLKDIGYPVKLGSGVAAAAA
HMMPanther: PTHR21152	1-389	FAMILY NOT NAMED,AMINOTRANSFERASE CLASS V	MADYVYGPGRNHLFVPGPVNIPDQVIRAMSRQNEDYRSPAVPALTKTLLEDVKQIFKTTTGTPFLFPTTGTGAWESALTNTLSPGDKIVSFLIGQFSLLWIDQQQRLNFNVDVVESDWGYGADLAALDYKLRQDPSHSIKAICIVHNETATGVTNDLSAVRKILDKHRHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPGGLEASKTAKSVRVFFDWKDYLKFYKMGTYWPYTPSIQLLYGLRTALDLIFEEGLENVIKRHNRLGTATRLAVEAWGLKNCTQKEEWFSDTVTAVVVPPYIDSAEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLMGALSGVEMVLKDIGYPVKLGSGVAAAAA
superfamily: SSF53383 IPR015424	8-378	PLP-dependent transferases Pyridoxal phosphate-dependent transferase, major d	PGRNHLFVPGPVNIPDQVIRAMSRQNEDYRSPAVPALTKTLLEDVKQIFKTTTGTPFLFPTTGTGAWESALTNTLSPGDKIVSFLIGQFSLLWIDQQQRLNFNVDVVESDWGYGADLAALDYKLRQDPSHSIKAICIVHNETATGVTNDLSAVRKILDKHRHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPGGLEASKTAKSVRVFFDWKDYLKFYKMGTYWPYTPSIQLLYGLRTALDLIFEEGLENVIKRHNRLGTATRLAVEAWGLKNCTQKEEWFSDTVTAVVVPPYIDSAEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLMGALSGVEMVLKDIGYPV
HMMPfam: PF00266 IPR000192	13-330	Aminotran_5 Aminotransferase, class V/Cysteine desulfurase	LFVPGPVNIPDQVIRAMSRQNEDYRSPAVPALTKTLLEDVKQIFKTTTGTPFLFPTTGTGAWESALTNTLSPGDKIVSFLIGQFSLLWIDQQQRLNFNVDVVESDWGYGADLAALDYKLRQDPSHSIKAICIVHNETATGVTNDLSAVRKILDKHRHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPGGLEASKTAKSVRVFFDWKDYLKFYKMGTYWPYTPSIQLLYGLRTALDLIFEEGLENVIKRHNRLGTATRLAVEAWGLKNCTQKEEWFSDTVTAVVVPPYIDSAEIVKHAWKR
Gene3D: G3DSA:3.40.640.10 IPR015421	22-258	no description Pyridoxal phosphate-dependent transferase, major r	PDQVIRAMSRQNEDYRSPAVPALTKTLLEDVKQIFKTTTGTPFLFPTTGTGAWESALTNTLSPGDKIVSFLIGQFSLLWIDQQQRLNFNVDVVESDWGYGADLAALDYKLRQDPSHSIKAICIVHNETATGVTNDLSAVRKILDKHRHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPGGLEASKTAKSVRVFFDWKDYLKFYKMGTYWPYTPSIQLLY
Seg: seg	58-72	seg	TTTGTPFLFPTTGTG
PatternScan: PS00595 IPR020578	193-213	AA_TRANSFER_CLASS_5 Aminotransferase class-V pyridoxal-phosphate bindi	VDVALTGSQKALSLPTGLGIV
Gene3D: G3DSA:3.90.1150.10 IPR015422	259-384	no description Pyridoxal phosphate-dependent transferase, major r	GLRTALDLIFEEGLENVIKRHNRLGTATRLAVEAWGLKNCTQKEEWFSDTVTAVVVPPYIDSAEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLMGALSGVEMVLKDIGYPVKLGSGV
Seg: seg	385-390	seg	AAAAAX

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Analyses

Blast

Blast matches against Reference R-Genes. Show