PRGDB00073196 (Os.85974)
| Os.85974 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 297722272 (NM_001186571) |
| Gene Class | NL |
| Domain Type | NBS, LRR, Others |
| Gene Species | Oryza sativa Japonica Group |
DNA Sequence
ATGGACATGTCCAGTTACCTAGCTGTAGGTGGCTGGTTCATCCAGGTCATTTTTGACAAGTATCTGTCCTACCAGCTTCAGAGCTGGGCGGCCGACTGCGGCATCAGCCATGAGATGAACAGACTTCGTGTCGCGCTGCTTCGCACGCAGTCTGTCCTCCATGGGGCAGAGGTAACACCTTCACTGTCTTACGGCTCCCTCCCATGGATGCGGGAGCTCCGGGATGTCATGTACCATGCAGAGGACCTCCTAGACAAGCTTGAGTACAACCGCCTCCATCATCAAATGCAGGAATCAAGTTCAACAGAGAGCAACAGTAGCCCAATCAGCGCCTTTATGCATTCCAGGTTTCGCAATCAAGGGGCCCAAGCTTCTGGTCTAGAGCCACACTGGGATAGATCAACCAGGGTCAAGAATCAGATGGTAAATCTGTTGGAGCGCCTTGAGCAGGTTGCTAGTGGAGTCAGTGAAGCACTCAGTCTACCAAGGAAGCCCAGGCACAGCAGATACAGCATCATGACAAGCTCAGTTGCCCATGGGGAAATCTTCGGGCGAGAATCAGAAATCCAACAGTTGGTAAGTACTCTTTTAAGCTCTCAGGTTGATGGTGATAATCCAGTCTCGGTTGCCTCCATTGTTGGAGTTGGTGGCGTTGGCAAGACTGCTCTAGCACAGCATGTGTACAACAACACTAGAGTAGCACAGTACTTTGACATGAGAATGTGGATCTGTGTTACTGATGCCTTTGATGAGTCCAGGATCACAAGAGAGATGCTAGAGTCAGTTTCCAGCAGTCGATTTAGGCATGACAGCATAACAAATTTCAACAGGCTTCAGGTGGCACTGCGAGCAAGGCTCGTATCCAAACGGTTTCTGCTTGTCTTAGATGATGTCTGGAGCAATGACAAGATAACTCTGGCGATAGAGCACGAGAACTGGCAGAAGCTTCTTTCTCCCCTAAAGGCTGCAGCAAATGGGAGCAAGATACTTCTGACCACCCGATCCAGTATGGTGGCGGAGATGCTACAGTCAGCCCATATAACTAACCTGGAGTGCTTGTCAGATAAGGATTGCTGGTCCCTGATAAAAATGATTGTGTTTGATGATACGAACCATCTTATAAATTCACAGTTGGCGAATATTGGGAGCGAGATTGCTAAGACACTTAATGGTCTACCTCTTGCCGCAAAGGTGGTCGCTAGACAGCTGAAATGTAAACACACCACAGATGAGTGGAAACAAGTCTTACAGAGAAATGCAGTATGGGATGAAATCATGCCAATTTTTCAGCATAGCTATGAGAATCTCCCAGTGCACCTTCAACAATGCCTTGCATATTGCAGTATCTTCCCCAAGGACTGGGAATTTGAAGCTGAGCAGTTGATCCTCATGTGGATGGCACAAGGTTATGTATACCCAGATGGTTGCAGGAGAATGGAAGACATTGGGAAGCAATATGTTGATGAGTTATGTAGTCGGTCATTTTTTGCCATTCAGAAGAAACAATTTGTCAGCTATTATGTGATGCCTCCCGTTATTCACAAACTTGCCAAATCAGTTTCAGCCGAAGAATGTTTCCGAATAGGAGGTGATGAACAGAGAAGGATCCCATCCTCTGTACGCCATCTATCAATCCATCTAGATAGCCTTTCAATGCTTGACGAGACAATACCATACATGAACCTGCGCACTCTCATTTTCTTTACGAGCAGAATGGTGGCTCCAATCAACATTTCCATCCCACAAGTAGTTCTTGATAACCTTCAAAGCCTTCGTGTCTTGGATTTATCACCTTGCAAGATTGACAGACTTCCTGACAGTATACGACAGTGTGTGCATCTCCGATACCTAAATATCTCATCAACTGCCATCAACATGTTACCAGAATACTTGGGTAAACTTTACCACTTGCAAGTTCTAAACTTATCAGGCTGCAGGCTTGAAAAGTTACCTTCAAGCATAAACAACCTGGTCAGTTTACGGCATCTGACAGCAGCTAACCAGATTCTTTCCACTATAACAGACATAGGAAGCCTAAGATACCTTCAGAGATTGCCCATTTTCAAGGTCACCAGTGAGGAAACAAACAGCATAATTCAGCTTGGTTATCTACAAGAGCTTCGTGGATCCCTCCACATTAGGAACCTTGAGAACATTGATGCTCCTGATGAGGCAAAGGAAGCCATGTTGTGTAAGAAAGTAAACCTGACAATGCTGCAGCTGATGTGGGCACCTGCTCGAGATTTGGTAAACTCAGATAAGGAAGCAGAGGTGTTAGAGTATCTCCAGCCACACCCAAATCTGAAGAGGCTGGACATCATCGGTTGGATGGGAGTCAAAGCCCCCAGTTGGCTTGAAAGCAAATGGCTAATCAATCTTGAGCTCATCTTCCTCAGTGGTTGCAATGCTTGGGAGCAGCTTCCACCACTTGGTCAGCTTCCATCTGTCAGGACTATTTGGTTGCAGCGTTTGAAAACAGTGAGGCAAATAGGCCTAGAGGTATATGGCAATAGAAGTTCACATGTGGCTTTCCAGTCATTAGAGGAGCTAGTTCTTGATGACATGCAAGAACTAAATGAGTGGTCATGGACAGGCCAGGAAATGATGAATCTCCGCAATATTGTGATTAAGGACTGCCAAAAGCTCAAAGAGCTGCCTCCACTACCTCCAAGCCTTACAGAGCTGACAATTGCAAAAAAAGGGTTCTGGGTTCCATACCATCATGATGTGAAGATGACACAATTGACCACTGTCACCACTGTCTCATCTCTCTGCATATTCAATTGCCCCAAGCTACTTGCCAGATTTTCCTCGCCAGTGACCAATGGAGTTGTAGCAAGCTTTCAGTCACTTAGAAGCCTTATCGTTGATCATATGAGAATACTCACATGCCCTCTTTTAAGGGAAAGGCTTGAGCACATTGAGAACCTAGACATCCAAGATTGCTCAGAGATCACCACCTTCACTGCAGACAATGAGGATGTCTTCCTACATCTAAGATCACTACAAAGCCTCTGCATAAGTGGCTGCAACAATCTACAATCGCTGCCTTCCTCATTGTCCAGCCTGGAGTCCCTGGATAAATTAATCTTGTGGAATTGCCCTGAGTTGGAATTACTCCCAGACGAGCAGCTGCCACTGTCTCTTAGAAAGCTTGAAGTCGCACTCTGTAACCCAGTGCTCAAGGATAGACTCAGAAAAGAATGTGGCATTGACTGGCCAAAGATTGCGCATATCCCTTGGGTTGAGATAGATGGTGAAATTCTGCAGTGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Os.85974 | translated coding region predicted by ESTScan from UniGene Os.85974 | MDMSSYLAVGGWFIQVIFDKYLSYQLQSWAADCGISHEMNRLRVALLRTQSVLHGAEVTPSLSYGSLPWMRELRDVMYHAEDLLDKLEYNRLHHQMQESSSTESNSSPISAFMHSRFRNQGAQASGLEPHWDRSTRVKNQMVNLLERLEQVASGVSEALSLPRKPRHSRYSIMTSSVAHGEIFGRESEIQQLVSTLLSSQVDGDNPVSVASIVGVGGVGKTALAQHVYNNTRVAQYFDMRMWICVTDAFDESRITREMLESVSSSRFRHDSITNFNRLQVALRARLVSKRFLLVLDDVWSNDKITLAIEHENWQKLLSPLKAAANGSKILLTTRSSMVAEMLQSAHITNLECLSDKDCWSLIKMIVFDDTNHLINSQLANIGSEIAKTLNGLPLAAKVVARQLKCKHTTDEWKQVLQRNAVWDEIMPIFQHSYENLPVHLQQCLAYCSIFPKDWEFEAEQLILMWMAQGYVYPDGCRRMEDIGKQYVDELCSRSFFAIQKKQFVSYYVMPPVIHKLAKSVSAEECFRIGGDEQRRIPSSVRHLSIHLDSLSMLDETIPYMNLRTLIFFTSRMVAPINISIPQVVLDNLQSLRVLDLSPCKIDRLPDSIRQCVHLRYLNISSTAINMLPEYLGKLYHLQVLNLSGCRLEKLPSSINNLVSLRHLTAANQILSTITDIGSLRYLQRLPIFKVTSEETNSIIQLGYLQELRGSLHIRNLENIDAPDEAKEAMLCKKVNLTMLQLMWAPARDLVNSDKEAEVLEYLQPHPNLKRLDIIGWMGVKAPSWLESKWLINLELIFLSGCNAWEQLPPLGQLPSVRTIWLQRLKTVRQIGLEVYGNRSSHVAFQSLEELVLDDMQELNEWSWTGQEMMNLRNIVIKDCQKLKELPPLPPSLTELTIAKKGFWVPYHHDVKMTQLTTVTTVSSLCIFNCPKLLARFSSPVTNGVVASFQSLRSLIVDHMRILTCPLLRERLEHIENLDIQDCSEITTFTADNEDVFLHLRSLQSLCISGCNNLQSLPSSLSSLESLDKLILWNCPELELLPDEQLPLSLRKLEVALCNPVLKDRLRKECGIDWPKIAHIPWVEIDGEILQ |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR23155 | 69-897 | FAMILY NOT NAMED,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | WMRELRDVMYHAEDLLDKLEYNRLHHQMQESSSTESNSSPISAFMHSRFRNQGAQASGLEPHWDRSTRVKNQMVNLLERLEQVASGVSEALSLPRKPRHSRYSIMTSSVAHGEIFGRESEIQQLVSTLLSSQVDGDNPVSVASIVGVGGVGKTALAQHVYNNTRVAQYFDMRMWICVTDAFDESRITREMLESVSSSRFRHDSITNFNRLQVALRARLVSKRFLLVLDDVWSNDKITLAIEHENWQKLLSPLKAAANGSKILLTTRSSMVAEMLQSAHITNLECLSDKDCWSLIKMIVFDDTNHLINSQLANIGSEIAKTLNGLPLAAKVVARQLKCKHTTDEWKQVLQRNAVWDEIMPIFQHSYENLPVHLQQCLAYCSIFPKDWEFEAEQLILMWMAQGYVYPDGCRRMEDIGKQYVDELCSRSFFAIQKKQFVSYYVMPPVIHKLAKSVSAEECFRIGGDEQRRIPSSVRHLSIHLDSLSMLDETIPYMNLRTLIFFTSRMVAPINISIPQVVLDNLQSLRVLDLSPCKIDRLPDSIRQCVHLRYLNISSTAINMLPEYLGKLYHLQVLNLSGCRLEKLPSSINNLVSLRHLTAANQILSTITDIGSLRYLQRLPIFKVTSEETNSIIQLGYLQELRGSLHIRNLENIDAPDEAKEAMLCKKVNLTMLQLMWAPARDLVNSDKEAEVLEYLQPHPNLKRLDIIGWMGVKAPSWLESKWLINLELIFLSGCNAWEQLPPLGQLPSVRTIWLQRLKTVRQIGLEVYGNRSSHVAFQSLEELVLDDMQELNEWSWTGQEMMNLRNIVIKDCQKLKELPPLPPSLTELTI |
| Seg: seg | 99-110 | seg | SSSTESNSSPIS |
| superfamily: SSF52540 | 165-418 | P-loop containing nucleoside triphosphate hydrolases | PRHSRYSIMTSSVAHGEIFGRESEIQQLVSTLLSSQVDGDNPVSVASIVGVGGVGKTALAQHVYNNTRVAQYFDMRMWICVTDAFDESRITREMLESVSSSRFRHDSITNFNRLQVALRARLVSKRFLLVLDDVWSNDKITLAIEHENWQKLLSPLKAAANGSKILLTTRSSMVAEMLQSAHITNLECLSDKDCWSLIKMIVFDDTNHLINSQLANIGSEIAKTLNGLPLAAKVVARQLKCKHTTDEWKQVLQR |
| Gene3D: G3DSA:3.40.50.300 | 183-341 | no description | FGRESEIQQLVSTLLSSQVDGDNPVSVASIVGVGGVGKTALAQHVYNNTRVAQYFDMRMWICVTDAFDESRITREMLESVSSSRFRHDSITNFNRLQVALRARLVSKRFLLVLDDVWSNDKITLAIEHENWQKLLSPLKAAANGSKILLTTRSSMVAEM |
| HMMPfam: PF00931 IPR002182
|
185-472 | NB-ARC,NBS NB-ARC
|
RESEIQQLVSTLLSSQVDGDNPVSVASIVGVGGVGKTALAQHVYNNTRVAQYFDMRMWICVTDAFDESRITREMLESVSSSRFRHDSITNFNRLQVALRARLVSKRFLLVLDDVWSNDKITLAIEHENWQKLLSPLKAAANGSKILLTTRSSMVAEMLQSAHITNLECLSDKDCWSLIKMIVFDDTNHLINSQLANIGSEIAKTLNGLPLAAKVVARQLKCKHTTDEWKQVLQRNAVWDEIMPIFQHSYENLPVHLQQCLAYCSIFPKDWEFEAEQLILMWMAQGYVY |
| FPrintScan: PR00364 IPR000767
|
209-224 | DISEASERSIST Disease resistance protein
|
VASIVGVGGVGKTALA |
| Seg: seg | 213-219 | seg | VGVGGVG |
| FPrintScan: PR00364 IPR000767
|
285-299 | DISEASERSIST Disease resistance protein
|
RLVSKRFLLVLDDVW |
| FPrintScan: PR00364 IPR000767
|
389-403 | DISEASERSIST Disease resistance protein
|
LNGLPLAAKVVARQL |
| superfamily: SSF52058 | 508-932 | L domain-like,LRR | VMPPVIHKLAKSVSAEECFRIGGDEQRRIPSSVRHLSIHLDSLSMLDETIPYMNLRTLIFFTSRMVAPINISIPQVVLDNLQSLRVLDLSPCKIDRLPDSIRQCVHLRYLNISSTAINMLPEYLGKLYHLQVLNLSGCRLEKLPSSINNLVSLRHLTAANQILSTITDIGSLRYLQRLPIFKVTSEETNSIIQLGYLQELRGSLHIRNLENIDAPDEAKEAMLCKKVNLTMLQLMWAPARDLVNSDKEAEVLEYLQPHPNLKRLDIIGWMGVKAPSWLESKWLINLELIFLSGCNAWEQLPPLGQLPSVRTIWLQRLKTVRQIGLEVYGNRSSHVAFQSLEELVLDDMQELNEWSWTGQEMMNLRNIVIKDCQKLKELPPLPPSLTELTIAKKGFWVPYHHDVKMTQLTTVTTVSSLCIFNCPKL |
| Gene3D: G3DSA:3.80.10.10 | 537-774 | no description | PSSVRHLSIHLDSLSMLDETIPYMNLRTLIFFTSRMVAPINISIPQVVLDNLQSLRVLDLSPCKIDRLPDSIRQCVHLRYLNISSTAINMLPEYLGKLYHLQVLNLSGCRLEKLPSSINNLVSLRHLTAANQILSTITDIGSLRYLQRLPIFKVTSEETNSIIQLGYLQELRGSLHIRNLENIDAPDEAKEAMLCKKVNLTMLQLMWAPARDLVNSDKEAEVLEYLQPHPNLKRLDII |
| HMMPfam: PF13855 | 579-624 | LRR_8,Leucine rich repeat | SIPQVVLDNLQSLRVLDLSPCKIDRLPDSIRQCVHLRYLNISSTAI |
| FPrintScan: PR00364 IPR000767
|
586-602 | DISEASERSIST Disease resistance protein
|
DNLQSLRVLDLSPCKID |
| HMMSmart: SM00369 IPR003591
|
588-611 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LQSLRVLDLSPCKIDRLPDSIRQC |
| ProfileScan: PS51450 IPR001611
|
590-611 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
SLRVLDLSPCKIDRLPDSIRQC |
| ProfileScan: PS51450 IPR001611
|
613-634 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
HLRYLNISSTAINMLPEYLGKL |
| HMMSmart: SM00369 IPR003591
|
634-657 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LYHLQVLNLSGCRLEKLPSSINNL |
| ProfileScan: PS51450 IPR001611
|
636-657 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
HLQVLNLSGCRLEKLPSSINNL |
| HMMPfam: PF00560 IPR001611
|
636-657 | LRR_1 Leucine-rich repeat
|
HLQVLNLSGCRLEKLPSSINNL |
| ProfileScan: PS51450 IPR001611
|
659-680 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
SLRHLTAANQILSTITDIGSLR |
| Gene3D: G3DSA:3.80.10.10 | 784-896 | no description | WLESKWLINLELIFLSGCNAWEQLPPLGQLPSVRTIWLQRLKTVRQIGLEVYGNRSSHVAFQSLEELVLDDMQELNEWSWTGQEMMNLRNIVIKDCQKLKELPPLPPSLTELT |
| ProfileScan: PS51450 IPR001611
|
792-814 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
NLELIFLSGCNAWEQLPPLGQLP |
| superfamily: SSF52047 | 844-1058 | RNI-like,LRR | FQSLEELVLDDMQELNEWSWTGQEMMNLRNIVIKDCQKLKELPPLPPSLTELTIAKKGFWVPYHHDVKMTQLTTVTTVSSLCIFNCPKLLARFSSPVTNGVVASFQSLRSLIVDHMRILTCPLLRERLEHIENLDIQDCSEITTFTADNEDVFLHLRSLQSLCISGCNNLQSLPSSLSSLESLDKLILWNCPELELLPDEQLPLSLRKLEVALCN |
| Seg: seg | 881-896 | seg | KLKELPPLPPSLTELT |
| Seg: seg | 915-924 | seg | LTTVTTVSSL |
| Gene3D: G3DSA:3.80.10.10 | 919-1057 | no description | TTVSSLCIFNCPKLLARFSSPVTNGVVASFQSLRSLIVDHMRILTCPLLRERLEHIENLDIQDCSEITTFTADNEDVFLHLRSLQSLCISGCNNLQSLPSSLSSLESLDKLILWNCPELELLPDEQLPLSLRKLEVALC |
| HMMSmart: SM00369 IPR003591
|
999-1023 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LRSLQSLCISGCNNLQSLPSSLSSL |
| ProfileScan: PS51450 IPR001611
|
1001-1023 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
SLQSLCISGCNNLQSLPSSLSSL |
| HMMPfam: PF00560 IPR001611
|
1001-1023 | LRR_1 Leucine-rich repeat
|
SLQSLCISGCNNLQSLPSSLSSL |
| Seg: seg | 1013-1031 | seg | LQSLPSSLSSLESLDKLIL |
| Seg: seg | 1035-1049 | seg | PELELLPDEQLPLSL |
List of Contributions
There has not been any contribution yet.
