PRGDB00073534 (Pgl.1445)

Pgl.1445
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	157620768 (EX421850)
Gene Class	T
Domain Type	TIR, LRR
Gene Species	Picea glauca
	Comment?

GQ03719.B7_N22 GQ037 - Shoot tip - Dormant Picea glauca cDNA clone GQ03719_N22 5', mRNA sequence

DNA Sequence

GGGGGATCACACTGAGCCAGGCCCAAGCCTCCTTGCTCTCCTTCTCAGCCCAGGCGATCATGATCACCTTCCGCTCTCCCCATCTTCGCCCCACTCTACCCGCTCTCCCAATCTTCATCGTTGAGTATGTGGGGAGGACGCCTGTGCGCCTCCCTTCACGGGGCGTTTCCAATAGACTCCTGGAAGAGTCGGCTGCTTCAATTCCAATCGCGATTGCAATGGAATTAGGAAGGAGCAGACACAGGAAATTCAAAATATACGACGTGTCTCTGAGCTTCAAAGGACGCGATGTGAGGAGAGGCTTTGCCGATCATCTCTACAACGCCCTCACCAGGGGGGGTTTGCACGAATTCCTTGACACCCACCAAATCAATGGGGGAGAGGACATCTCTGCAAGCTTACAAAACGCAGTTGAGGTGAGTCGCATCCTGATTGCACAATCTGCCTGGTGCCTCAGGGAAGCCTTCCTGATCGCGCAGCAAGTACTACTTCAAGGGAAGGAGGAGTCGACCATCGCCATTCCTCTATTTCACAGCGTGACTCCTGAGCTAAAGAAATTGGTGATTGGAAGGATTGTGTCTTCCAACATTGCCGTCTATCTGAGTGGTCACTCCAAGAAGACACGAATAGGAGGTTAACTAATTCTTCGCTGCTCTGTTGCTTTTTATTTATTTATTCGTATACATGTTTTGTTTATCTAAATCACACTGTTTGTGCGTTTGTATGGGTGTACTGTTTGTGCGTTTGTATGGGTGTAGATCGATTAATAAGTGTTGTGTATATGAAAGGAAATGTTTGTATTGGTTTAGATTGATTAATAAATGTCGTATATATGAAAGGAAATTTGTAAATGGAAGTTTACAATTTAATTCTCGGACTGAGGGCTGCGTGGATGCACCTA

Protein sequences

Name	Description	Sequence
Pgl.1445	translated coding region predicted by ESTScan from UniGene Pgl.1445	XGITLSQAQASLLSFSAQAIMITFRSPHLRPTLPALPIFIVEYVGRTPVRLPSRGVSNRLLEESAASIPIAIAMELGRSRHRKFKIYDVSLSFKGRDVRRGFADHLYNALTRGGLHEFLDTHQINGGEDISASLQNAVEVSRILIAQSAWCLREAFLIAQQVLLQGKEESTIAIPLFHSVTPELKKLVIGRIVSSNIAVYLSGHSKKTRIGG

Domains

Domain	Start-End	Description	Sequence
Seg: seg	5-19	seg	LSQAQASLLSFSAQA
Seg: seg	64-73	seg	SAASIPIAIA
superfamily: SSF52200 IPR000157	75-182	Toll/Interleukin receptor TIR domain Toll-Interleukin receptor	ELGRSRHRKFKIYDVSLSFKGRDVRRGFADHLYNALTRGGLHEFLDTHQINGGEDISASLQNAVEVSRILIAQSAWCLREAFLIAQQVLLQGKEESTIAIPLFHSVTP
ProfileScan: PS50104 IPR000157	85-145	TIR Toll-Interleukin receptor	KIYDVSLSFKGRDVRRGFADHLYNALTRGGLHEFLDTHQINGGEDISASLQNAVEVSRILI
Gene3D: G3DSA:3.40.50.10140	85-183	no description	KIYDVSLSFKGRDVRRGFADHLYNALTRGGLHEFLDTHQINGGEDISASLQNAVEVSRILIAQSAWCLREAFLIAQQVLLQGKEESTIAIPLFHSVTPE
HMMSmart: SM00255 IPR000157	86-207	Toll Toll/interleukin-1 receptor homology (TIR) domain	IYDVSLSFKGRDVRRGFADHLYNALTRGGLHEFLDTHQINGGEDISASLQNAVEVSRILIAQSAWCLREAFLIAQQVLLQGKEESTIAIPLFHSVTPELKKLVIGRIVSSNIAVYLSGHSKK
HMMPfam: PF01582 IPR000157	91-186	TIR Toll-Interleukin receptor	LSFKGRDVRRGFADHLYNALTRGGLHEFLDTHQINGGEDISASLQNAVEVSRILIAQSAWCLREAFLIAQQVLLQGKEESTIAIPLFHSVTPELKK

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Analyses

Blast

Blast matches against Reference R-Genes. Show