PRGDB00073556 (Pgl.3041)

Pgl.3041
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	157565891 (EX367119)
Gene Class	Unknown
Domain Type
Gene Species	Picea glauca
	Comment?

GQ03212.B7_G20 GQ032 - Shoot tip (Normalized library) Picea glauca cDNA clone GQ03212_G20 5', mRNA sequence

DNA Sequence

ACCAGGGAGAAATCAACTATTTGTTCCGGGGCCCGTCAATATTCCGGAACCTGTTCTGCAGGCTATGAATAGAAACAATGAGGACTACCGCGCTCCACCAGTGCCAGCTCTCACAAAGAAACTTCTTGCTGACGTACCGAAAATATTCAAATCCACCACAGGCACCCCTTTCTTATTTCCTACTACGGGTACTGGTGCTTGGGAAAGTGCTCTTACAAACACACTGTCACCACGAGATCGAATCATCTCTTTTGAGATGGGCCAGTTCAGTCTTCTGTGGATTGATCAAATGAAACGCCTCAACTTTGATGTTGATGTTGTACACTGTGAATGGGGGACAGGGGTGGATCTTGGGATACTAAGGACAAAGCTTGAAGCAGATAAGGAACATAAAGTAAGGGCTATTTGCTGTGTTCACAATGAGACTGCAACGGGCGTCACAAACAATTTGGCAGCTATAAGGACGGTGATCGATGATTGCATGCATCCTGCTTTGTTTCTGGTGGATGGCGTGTCTTCTGTATGTGCCATTGATTTCCGTATGGATGAATGGGGAGTGGATGTAGCGCTAACAGGTTCTCAAAAAGCTCTGTCCTTGCCAACAGGTCTTGGTATTGTCTGTGCAAGCCCAAAGGCCTTAGAAGCAACAAAGACTGCAAAGTCGTTGAGGGTATTTTTTGACTGGAACGACTATTTGAAGTTCTATAAGTTGGGGACGTATTGGCCCTACACACCATCAATTCAACTCCTATATGGACTAAGGACAGCATTAGACCTTATATTTTTGGAAGGCTTAGATAACGTCATTGCAAGGCACAGTCGCTTAGGAAGGGCAACAAGGCTTGCTGTGGAAGCATGGGGGTTGAAGAACTGCACTCAAAGGGAGGAATGGTACAGTGACACTGGTACAGCAGTAGTTATTCCCCCTTATATTGACAGT

Protein sequences

Name	Description	Sequence
Pgl.3041	translated coding region predicted by ESTScan from UniGene Pgl.3041	XPGRNQLFVPGPVNIPEPVLQAMNRNNEDYRAPPVPALTKKLLADVPKIFKSTTGTPFLFPTTGTGAWESALTNTLSPRDRIISFEMGQFSLLWIDQMKRLNFDVDVVHCEWGTGVDLGILRTKLEADKEHKVRAICCVHNETATGVTNNLAAIRTVIDDCMHPALFLVDGVSSVCAIDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEATKTAKSLRVFFDWNDYLKFYKLGTYWPYTPSIQLLYGLRTALDLIFLEGLDNVIARHSRLGRATRLAVEAWGLKNCTQREEWYSDTGTAVVIPPYIDS

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR21152:SF7	1-314	SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED	XPGRNQLFVPGPVNIPEPVLQAMNRNNEDYRAPPVPALTKKLLADVPKIFKSTTGTPFLFPTTGTGAWESALTNTLSPRDRIISFEMGQFSLLWIDQMKRLNFDVDVVHCEWGTGVDLGILRTKLEADKEHKVRAICCVHNETATGVTNNLAAIRTVIDDCMHPALFLVDGVSSVCAIDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEATKTAKSLRVFFDWNDYLKFYKLGTYWPYTPSIQLLYGLRTALDLIFLEGLDNVIARHSRLGRATRLAVEAWGLKNCTQREEWYSDTGTAVVIPPYIDS
HMMPanther: PTHR21152	1-314	FAMILY NOT NAMED,AMINOTRANSFERASE CLASS V	XPGRNQLFVPGPVNIPEPVLQAMNRNNEDYRAPPVPALTKKLLADVPKIFKSTTGTPFLFPTTGTGAWESALTNTLSPRDRIISFEMGQFSLLWIDQMKRLNFDVDVVHCEWGTGVDLGILRTKLEADKEHKVRAICCVHNETATGVTNNLAAIRTVIDDCMHPALFLVDGVSSVCAIDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEATKTAKSLRVFFDWNDYLKFYKLGTYWPYTPSIQLLYGLRTALDLIFLEGLDNVIARHSRLGRATRLAVEAWGLKNCTQREEWYSDTGTAVVIPPYIDS
superfamily: SSF53383 IPR015424	2-313	PLP-dependent transferases Pyridoxal phosphate-dependent transferase, major d	PGRNQLFVPGPVNIPEPVLQAMNRNNEDYRAPPVPALTKKLLADVPKIFKSTTGTPFLFPTTGTGAWESALTNTLSPRDRIISFEMGQFSLLWIDQMKRLNFDVDVVHCEWGTGVDLGILRTKLEADKEHKVRAICCVHNETATGVTNNLAAIRTVIDDCMHPALFLVDGVSSVCAIDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEATKTAKSLRVFFDWNDYLKFYKLGTYWPYTPSIQLLYGLRTALDLIFLEGLDNVIARHSRLGRATRLAVEAWGLKNCTQREEWYSDTGTAVVIPPYID
HMMPfam: PF00266 IPR000192	7-290	Aminotran_5 Aminotransferase, class V/Cysteine desulfurase	LFVPGPVNIPEPVLQAMNRNNEDYRAPPVPALTKKLLADVPKIFKSTTGTPFLFPTTGTGAWESALTNTLSPRDRIISFEMGQFSLLWIDQMKRLNFDVDVVHCEWGTGVDLGILRTKLEADKEHKVRAICCVHNETATGVTNNLAAIRTVIDDCMHPALFLVDGVSSVCAIDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEATKTAKSLRVFFDWNDYLKFYKLGTYWPYTPSIQLLYGLRTALDLIFLEGLDNVIARHSRLGRATRLAVEAWGLK
Gene3D: G3DSA:3.40.640.10 IPR015421	16-251	no description Pyridoxal phosphate-dependent transferase, major r	PEPVLQAMNRNNEDYRAPPVPALTKKLLADVPKIFKSTTGTPFLFPTTGTGAWESALTNTLSPRDRIISFEMGQFSLLWIDQMKRLNFDVDVVHCEWGTGVDLGILRTKLEADKEHKVRAICCVHNETATGVTNNLAAIRTVIDDCMHPALFLVDGVSSVCAIDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEATKTAKSLRVFFDWNDYLKFYKLGTYWPYTPSIQLL
Seg: seg	53-66	seg	TTGTPFLFPTTGTG
PatternScan: PS00595 IPR020578	187-207	AA_TRANSFER_CLASS_5 Aminotransferase class-V pyridoxal-phosphate bindi	VDVALTGSQKALSLPTGLGIV
Gene3D: G3DSA:3.90.1150.10 IPR015422	252-313	no description Pyridoxal phosphate-dependent transferase, major r	YGLRTALDLIFLEGLDNVIARHSRLGRATRLAVEAWGLKNCTQREEWYSDTGTAVVIPPYID

List of Contributions

There has not been any contribution yet.

Add a Contribution

Analyses

Blast

Blast matches against Reference R-Genes. Show