PRGDB00073637 (Pgl.7202)

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Pgl.7202
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 157528351 (EX329582)
Gene Class Unknown
Domain Type
Gene Species Picea glauca

Comment?

GQ02830.B7_G16 GQ028 - Cambium

DNA Sequence

AGAGTATTTGGACTATAAAGTGTTCGCTTGAACGGTCAGGCCAACAAACTCTCGTCGCGGTGCCTCTTCCGTTTGCCTTCGCAGCATCAGATCACTTCATAAATAACAGCAGAGCAGGATCATCACATACAGACTCAATTGTTAGTCTGTCTCTCGAGGCAGCAGTGGTTTATGATATTGTAAAGGAACAATGGCGACATTCGAACTCTATCGCAAATCAACGATTGGCACGTGTCTCACAGAAACGTTGGATGAACTCGTATCAAACGGCACCCTCAGTCCGGAACATGCTATTCAAGTTTTGGTGCAGTTTGACAAGTCTATGGCAGAAGCTCTGGAGACACAAGTAAAGAGTAAGGTCACCATCAAGGGGCATTTGCACACTTACAGATTCTGTGACAATGTATGGACCTTCCTTTTGCAGAATGCAACCTTTAAAGGTGAGGATATACAAGAAAATGCTGTCAGGGTAAAAATTGTTGCTTGTGATTCAAAAATTCTCACCCAGTGATCCAAGAACCCACTAAAAGGGAGAAAAGGTGAACTTCAGAGTAGTTGGAATCATGTTATTCATAGGCAGGAGCTGCAGGTTCTTGAACATACATAATTGGTACCATTGGATACAAAGGTTTGTCTAATGATAGAATGCAATTCCTGTTCGCTTGATCTTAGAGAAGAGTTTTGGGGCCCTTCAAAGGCAAATTATGGGAATGCAATGTAACTATTATGTAACTGGTTTTGTGTTTTCTTTGACATATGAATCCAGAACTGAAAATGTAGTTGTTCATTTTACTAAATTCTGTGTTTGGGAAATTTTGAATTTCATCTCAACAGAGTTCTTTGTTCTTGTTTCGAGCAAAAAA


Protein sequences

Name Description Sequence
Pgl.7202 translated coding region predicted by ESTScan from UniGene Pgl.7202

MATFELYRKSTIGTCLTETLDELVSNGTLSPEHAIQVLVQFDKSMAEALETQVKSKVTIKGHLHTYRFCDNVWTFLLQNATFKGEDIQENAVRVKIVACDSKILTQXSKNPLKGRKGELQSSWNHVIHRQELQVLEHT

Domains

Domain Start-End Description Sequence

BlastProDom: PD009224
IPR015872
1-50 Q7FPX2_ORYSA_Q7FPX2;
Transcription initiation factor IIA, gamma subunit

MATFELYRKSTIGTCLTETLDELVSNGTLSPEHAIQVLVQFDKSMAEALE

HMMPanther: PTHR10966
IPR003194
1-107 TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2
Transcription initiation factor IIA, gamma subunit

MATFELYRKSTIGTCLTETLDELVSNGTLSPEHAIQVLVQFDKSMAEALETQVKSKVTIKGHLHTYRFCDNVWTFLLQNATFKGEDIQENAVRVKIVACDSKILTQX

Gene3D: G3DSA:1.10.287.190
IPR015872
2-54 no description
Transcription initiation factor IIA, gamma subunit

ATFELYRKSTIGTCLTETLDELVSNGTLSPEHAIQVLVQFDKSMAEALETQVK

HMMPfam: PF02268
IPR015872
3-50 TFIIA_gamma_N
Transcription initiation factor IIA, gamma subunit

TFELYRKSTIGTCLTETLDELVSNGTLSPEHAIQVLVQFDKSMAEALE

superfamily: SSF47396
IPR009083
4-54 Transcription factor IIA (TFIIA), alpha-helical domain
Transcription factor IIA, helical

FELYRKSTIGTCLTETLDELVSNGTLSPEHAIQVLVQFDKSMAEALETQVK

superfamily: SSF50784
IPR009088
52-102 Transcription factor IIA (TFIIA), beta-barrel domain
Transcription factor IIA, beta-barrel

QVKSKVTIKGHLHTYRFCDNVWTFLLQNATFKGEDIQENAVRVKIVACDSK

HMMPfam: PF02751
IPR015871
52-101 TFIIA_gamma_C
Transcription initiation factor IIA, gamma subunit

QVKSKVTIKGHLHTYRFCDNVWTFLLQNATFKGEDIQENAVRVKIVACDS

Gene3D: G3DSA:2.30.18.10
IPR009088
55-107 no description
Transcription factor IIA, beta-barrel

SKVTIKGHLHTYRFCDNVWTFLLQNATFKGEDIQENAVRVKIVACDSKILTQX






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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