PRGDB00073979 (Ppa.513)
| Ppa.513 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 168063178 (XM_001783499) |
| Gene Class | Unknown |
| Domain Type | |
| Gene Species | Physcomitrella patens |
DNA Sequence
AATTTAACCTCTACCACTTCCTTCAATTGCAGCTCATCCATCACCTTCACAGCTCCATTCCTCTTGGCGTTGTTCGCAGTCGGACTCGCAGCTGATAGATCTTGCACGAGCTGGTGGTGGTGGTGCCTGAGCAGTCATGGAGTACTACCCTGCGCCGGGGAGGAACCATTTGTTTGTTCCAGGCCCTACCAATGTTCCCGAGCCCATTCTGCGGGCTATGAACCGCAGCAACGAGGATCACCGCTCCCCCGCTTTCCCCAAGCTCTCCAAATCCGTCATTGACGATGTGAAAGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACAAGATCATCTCCTTCCGGCTGGGACAATTCAGCCTTCTCTGGATTGACCAAATGCAACGATACAACTTCGATGTGGACGTAGTTGACTGTGAGTGGGGTGCGGGAATCGATCTGGATGTCTTGAAACAGAAGCTGGTATCTGATCGTTCGCACTCTGTGAAGGCTGTCTGCGTGGTGCACAATGAGACCTCCACCGGAGTCACGAACGACATCGGTGCTGTACGCAGAGTGCTCGATGAGGCAAACCACCCAGCGTTGTTGTTGGTGGACGGAGTATCTTCAATTGGTGCAATTGATTTCCGTATGGACGACTGGAGAGTGGATGTCGCTCTTACTGGGTCCCAGAAAGCTTTGTCACTTCCCACTGGCCTTGGTATTGTTTGCGCAAGCCCCAAGGCTCTTGAAGCTGCGAAAAGATCCAAGTCAACCCGCGTGTTTTTCGATTGGGGTGATTACTTGAAGTTTTACGAAGCGGGAACTTATTGGCCTTACACTCCGTCGAGCCAGATGCTCTACGGACTCAGAGCCTCTTTGGACATGATTCTCAATGAGGAGGGACTCGACAACGTCATTGCCAGGCACTGTCGTCTTGCTGAAGCAACCAGGCAAGCTGTTAGGGCCTGGGGCCTCACTCTGTGCACCAAGGATCCCAAGTGGAAAAGTGATACCGTTACCGCAGTTGTTGTGCCTTCATGGATCAACAGCAACGACATTGTCAAGATTGCATACAAGAAGTACAATTTGAGCCTCGGAGTTGGCTTGAACAAAGTTGCAGGGAAGGTTTTCCGTATAGGACACCTTGGAAATGTTAACGAGTTGCAATTGCTCGGAGCCTTGGCAGGAGTTGAGTTGTGCCTGATGGAGGTTGGATACCCAGTCACCCTAGGAAGCGGTGTAGCTGCAGCTCAGGCTCATCTCGCAAAGAAGACGCCCTTGATTGTGTCTCGTATATGAGCAGCTACCCCGGCATTTGATGATGTTAGAAATGTCTGGATACACCAGAGTCTGTGGCCGTCAATGTAATATTTTAGAAAGTCCAGAAGGGTGTCTGTTGAGTTGTTGAAGTGTTGTGTACAATCGCCTTAACTAATACTTTGGCACTAGATTACATTGCTTACCAAATGTATTGGTATCCCATTTGTATAAACGATCAATTCTACTCCCTGAACACAGCCCGCTGGATAATTTCCAAAACTTGTTGTAAACTGCATTTACAGTTTC
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Ppa.513 | translated coding region predicted by ESTScan from UniGene Ppa.513 | NLTSTTSFNCSSSITFTAPFLLALFAVGLAAEDLARAGGGGAXAVMEYYPAPGRNHLFVPGPTNVPEPILRAMNRSNEDHRSPAFPKLSKSVIDDVKEIFRTKTATSFIFPTTGTGAWESALTNTLSPGDKIISFRLGQFSLLWIDQMQRYNFDVDVVDCEWGAGIDLDVLKQKLVSDRSHSVKAVCVVHNETSTGVTNDIGAVRRVLDEANHPALLLVDGVSSIGAIDFRMDDWRVDVALTGSQKALSLPTGLGIVCASPKALEAAKRSKSTRVFFDWGDYLKFYEAGTYWPYTPSSQMLYGLRASLDMILNEEGLDNVIARHCRLAEATRQAVRAWGLTLCTKDPKWKSDTVTAVVVPSWINSNDIVKIAYKKYNLSLGVGLNKVAGKVFRIGHLGNVNELQLLGALAGVELCLMEVGYPVTLGSGVAAAQAHLAKKTPLIVSRI |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| Seg: seg | 18-44 | seg | APFLLALFAVGLAAEDLARAGGGGAXA |
| HMMPanther: PTHR21152:SF7 | 44-447 | SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED | AVMEYYPAPGRNHLFVPGPTNVPEPILRAMNRSNEDHRSPAFPKLSKSVIDDVKEIFRTKTATSFIFPTTGTGAWESALTNTLSPGDKIISFRLGQFSLLWIDQMQRYNFDVDVVDCEWGAGIDLDVLKQKLVSDRSHSVKAVCVVHNETSTGVTNDIGAVRRVLDEANHPALLLVDGVSSIGAIDFRMDDWRVDVALTGSQKALSLPTGLGIVCASPKALEAAKRSKSTRVFFDWGDYLKFYEAGTYWPYTPSSQMLYGLRASLDMILNEEGLDNVIARHCRLAEATRQAVRAWGLTLCTKDPKWKSDTVTAVVVPSWINSNDIVKIAYKKYNLSLGVGLNKVAGKVFRIGHLGNVNELQLLGALAGVELCLMEVGYPVTLGSGVAAAQAHLAKKTPLIVSRI |
| HMMPanther: PTHR21152 | 44-447 | FAMILY NOT NAMED,AMINOTRANSFERASE CLASS V | AVMEYYPAPGRNHLFVPGPTNVPEPILRAMNRSNEDHRSPAFPKLSKSVIDDVKEIFRTKTATSFIFPTTGTGAWESALTNTLSPGDKIISFRLGQFSLLWIDQMQRYNFDVDVVDCEWGAGIDLDVLKQKLVSDRSHSVKAVCVVHNETSTGVTNDIGAVRRVLDEANHPALLLVDGVSSIGAIDFRMDDWRVDVALTGSQKALSLPTGLGIVCASPKALEAAKRSKSTRVFFDWGDYLKFYEAGTYWPYTPSSQMLYGLRASLDMILNEEGLDNVIARHCRLAEATRQAVRAWGLTLCTKDPKWKSDTVTAVVVPSWINSNDIVKIAYKKYNLSLGVGLNKVAGKVFRIGHLGNVNELQLLGALAGVELCLMEVGYPVTLGSGVAAAQAHLAKKTPLIVSRI |
| superfamily: SSF53383 IPR015424
|
52-423 | PLP-dependent transferases Pyridoxal phosphate-dependent transferase, major d
|
PGRNHLFVPGPTNVPEPILRAMNRSNEDHRSPAFPKLSKSVIDDVKEIFRTKTATSFIFPTTGTGAWESALTNTLSPGDKIISFRLGQFSLLWIDQMQRYNFDVDVVDCEWGAGIDLDVLKQKLVSDRSHSVKAVCVVHNETSTGVTNDIGAVRRVLDEANHPALLLVDGVSSIGAIDFRMDDWRVDVALTGSQKALSLPTGLGIVCASPKALEAAKRSKSTRVFFDWGDYLKFYEAGTYWPYTPSSQMLYGLRASLDMILNEEGLDNVIARHCRLAEATRQAVRAWGLTLCTKDPKWKSDTVTAVVVPSWINSNDIVKIAYKKYNLSLGVGLNKVAGKVFRIGHLGNVNELQLLGALAGVELCLMEVGYPV |
| HMMPfam: PF00266 IPR000192
|
57-383 | Aminotran_5 Aminotransferase, class V/Cysteine desulfurase
|
LFVPGPTNVPEPILRAMNRSNEDHRSPAFPKLSKSVIDDVKEIFRTKTATSFIFPTTGTGAWESALTNTLSPGDKIISFRLGQFSLLWIDQMQRYNFDVDVVDCEWGAGIDLDVLKQKLVSDRSHSVKAVCVVHNETSTGVTNDIGAVRRVLDEANHPALLLVDGVSSIGAIDFRMDDWRVDVALTGSQKALSLPTGLGIVCASPKALEAAKRSKSTRVFFDWGDYLKFYEAGTYWPYTPSSQMLYGLRASLDMILNEEGLDNVIARHCRLAEATRQAVRAWGLTLCTKDPKWKSDTVTAVVVPSWINSNDIVKIAYKKYNLSLGVG |
| Gene3D: G3DSA:3.40.640.10 IPR015421
|
67-302 | no description Pyridoxal phosphate-dependent transferase, major r
|
EPILRAMNRSNEDHRSPAFPKLSKSVIDDVKEIFRTKTATSFIFPTTGTGAWESALTNTLSPGDKIISFRLGQFSLLWIDQMQRYNFDVDVVDCEWGAGIDLDVLKQKLVSDRSHSVKAVCVVHNETSTGVTNDIGAVRRVLDEANHPALLLVDGVSSIGAIDFRMDDWRVDVALTGSQKALSLPTGLGIVCASPKALEAAKRSKSTRVFFDWGDYLKFYEAGTYWPYTPSSQMLY |
| PatternScan: PS00595 IPR020578
|
237-257 | AA_TRANSFER_CLASS_5 Aminotransferase class-V pyridoxal-phosphate bindi
|
VDVALTGSQKALSLPTGLGIV |
| Gene3D: G3DSA:3.90.1150.10 IPR015422
|
303-429 | no description Pyridoxal phosphate-dependent transferase, major r
|
GLRASLDMILNEEGLDNVIARHCRLAEATRQAVRAWGLTLCTKDPKWKSDTVTAVVVPSWINSNDIVKIAYKKYNLSLGVGLNKVAGKVFRIGHLGNVNELQLLGALAGVELCLMEVGYPVTLGSGV |
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