PRGDB00073979 (Ppa.513)

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Ppa.513
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 168063178 (XM_001783499)
Gene Class Unknown
Domain Type
Gene Species Physcomitrella patens

Comment?

Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_199392) mRNA, complete cds

DNA Sequence

AATTTAACCTCTACCACTTCCTTCAATTGCAGCTCATCCATCACCTTCACAGCTCCATTCCTCTTGGCGTTGTTCGCAGTCGGACTCGCAGCTGATAGATCTTGCACGAGCTGGTGGTGGTGGTGCCTGAGCAGTCATGGAGTACTACCCTGCGCCGGGGAGGAACCATTTGTTTGTTCCAGGCCCTACCAATGTTCCCGAGCCCATTCTGCGGGCTATGAACCGCAGCAACGAGGATCACCGCTCCCCCGCTTTCCCCAAGCTCTCCAAATCCGTCATTGACGATGTGAAAGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACAAGATCATCTCCTTCCGGCTGGGACAATTCAGCCTTCTCTGGATTGACCAAATGCAACGATACAACTTCGATGTGGACGTAGTTGACTGTGAGTGGGGTGCGGGAATCGATCTGGATGTCTTGAAACAGAAGCTGGTATCTGATCGTTCGCACTCTGTGAAGGCTGTCTGCGTGGTGCACAATGAGACCTCCACCGGAGTCACGAACGACATCGGTGCTGTACGCAGAGTGCTCGATGAGGCAAACCACCCAGCGTTGTTGTTGGTGGACGGAGTATCTTCAATTGGTGCAATTGATTTCCGTATGGACGACTGGAGAGTGGATGTCGCTCTTACTGGGTCCCAGAAAGCTTTGTCACTTCCCACTGGCCTTGGTATTGTTTGCGCAAGCCCCAAGGCTCTTGAAGCTGCGAAAAGATCCAAGTCAACCCGCGTGTTTTTCGATTGGGGTGATTACTTGAAGTTTTACGAAGCGGGAACTTATTGGCCTTACACTCCGTCGAGCCAGATGCTCTACGGACTCAGAGCCTCTTTGGACATGATTCTCAATGAGGAGGGACTCGACAACGTCATTGCCAGGCACTGTCGTCTTGCTGAAGCAACCAGGCAAGCTGTTAGGGCCTGGGGCCTCACTCTGTGCACCAAGGATCCCAAGTGGAAAAGTGATACCGTTACCGCAGTTGTTGTGCCTTCATGGATCAACAGCAACGACATTGTCAAGATTGCATACAAGAAGTACAATTTGAGCCTCGGAGTTGGCTTGAACAAAGTTGCAGGGAAGGTTTTCCGTATAGGACACCTTGGAAATGTTAACGAGTTGCAATTGCTCGGAGCCTTGGCAGGAGTTGAGTTGTGCCTGATGGAGGTTGGATACCCAGTCACCCTAGGAAGCGGTGTAGCTGCAGCTCAGGCTCATCTCGCAAAGAAGACGCCCTTGATTGTGTCTCGTATATGAGCAGCTACCCCGGCATTTGATGATGTTAGAAATGTCTGGATACACCAGAGTCTGTGGCCGTCAATGTAATATTTTAGAAAGTCCAGAAGGGTGTCTGTTGAGTTGTTGAAGTGTTGTGTACAATCGCCTTAACTAATACTTTGGCACTAGATTACATTGCTTACCAAATGTATTGGTATCCCATTTGTATAAACGATCAATTCTACTCCCTGAACACAGCCCGCTGGATAATTTCCAAAACTTGTTGTAAACTGCATTTACAGTTTC


Protein sequences

Name Description Sequence
Ppa.513 translated coding region predicted by ESTScan from UniGene Ppa.513

NLTSTTSFNCSSSITFTAPFLLALFAVGLAAEDLARAGGGGAXAVMEYYPAPGRNHLFVPGPTNVPEPILRAMNRSNEDHRSPAFPKLSKSVIDDVKEIFRTKTATSFIFPTTGTGAWESALTNTLSPGDKIISFRLGQFSLLWIDQMQRYNFDVDVVDCEWGAGIDLDVLKQKLVSDRSHSVKAVCVVHNETSTGVTNDIGAVRRVLDEANHPALLLVDGVSSIGAIDFRMDDWRVDVALTGSQKALSLPTGLGIVCASPKALEAAKRSKSTRVFFDWGDYLKFYEAGTYWPYTPSSQMLYGLRASLDMILNEEGLDNVIARHCRLAEATRQAVRAWGLTLCTKDPKWKSDTVTAVVVPSWINSNDIVKIAYKKYNLSLGVGLNKVAGKVFRIGHLGNVNELQLLGALAGVELCLMEVGYPVTLGSGVAAAQAHLAKKTPLIVSRI

Domains

Domain Start-End Description Sequence

Seg: seg
18-44 seg

APFLLALFAVGLAAEDLARAGGGGAXA

HMMPanther: PTHR21152:SF7
44-447 SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED

AVMEYYPAPGRNHLFVPGPTNVPEPILRAMNRSNEDHRSPAFPKLSKSVIDDVKEIFRTKTATSFIFPTTGTGAWESALTNTLSPGDKIISFRLGQFSLLWIDQMQRYNFDVDVVDCEWGAGIDLDVLKQKLVSDRSHSVKAVCVVHNETSTGVTNDIGAVRRVLDEANHPALLLVDGVSSIGAIDFRMDDWRVDVALTGSQKALSLPTGLGIVCASPKALEAAKRSKSTRVFFDWGDYLKFYEAGTYWPYTPSSQMLYGLRASLDMILNEEGLDNVIARHCRLAEATRQAVRAWGLTLCTKDPKWKSDTVTAVVVPSWINSNDIVKIAYKKYNLSLGVGLNKVAGKVFRIGHLGNVNELQLLGALAGVELCLMEVGYPVTLGSGVAAAQAHLAKKTPLIVSRI

HMMPanther: PTHR21152
44-447 FAMILY NOT NAMED,AMINOTRANSFERASE CLASS V

AVMEYYPAPGRNHLFVPGPTNVPEPILRAMNRSNEDHRSPAFPKLSKSVIDDVKEIFRTKTATSFIFPTTGTGAWESALTNTLSPGDKIISFRLGQFSLLWIDQMQRYNFDVDVVDCEWGAGIDLDVLKQKLVSDRSHSVKAVCVVHNETSTGVTNDIGAVRRVLDEANHPALLLVDGVSSIGAIDFRMDDWRVDVALTGSQKALSLPTGLGIVCASPKALEAAKRSKSTRVFFDWGDYLKFYEAGTYWPYTPSSQMLYGLRASLDMILNEEGLDNVIARHCRLAEATRQAVRAWGLTLCTKDPKWKSDTVTAVVVPSWINSNDIVKIAYKKYNLSLGVGLNKVAGKVFRIGHLGNVNELQLLGALAGVELCLMEVGYPVTLGSGVAAAQAHLAKKTPLIVSRI

superfamily: SSF53383
IPR015424
52-423 PLP-dependent transferases
Pyridoxal phosphate-dependent transferase, major d

PGRNHLFVPGPTNVPEPILRAMNRSNEDHRSPAFPKLSKSVIDDVKEIFRTKTATSFIFPTTGTGAWESALTNTLSPGDKIISFRLGQFSLLWIDQMQRYNFDVDVVDCEWGAGIDLDVLKQKLVSDRSHSVKAVCVVHNETSTGVTNDIGAVRRVLDEANHPALLLVDGVSSIGAIDFRMDDWRVDVALTGSQKALSLPTGLGIVCASPKALEAAKRSKSTRVFFDWGDYLKFYEAGTYWPYTPSSQMLYGLRASLDMILNEEGLDNVIARHCRLAEATRQAVRAWGLTLCTKDPKWKSDTVTAVVVPSWINSNDIVKIAYKKYNLSLGVGLNKVAGKVFRIGHLGNVNELQLLGALAGVELCLMEVGYPV

HMMPfam: PF00266
IPR000192
57-383 Aminotran_5
Aminotransferase, class V/Cysteine desulfurase

LFVPGPTNVPEPILRAMNRSNEDHRSPAFPKLSKSVIDDVKEIFRTKTATSFIFPTTGTGAWESALTNTLSPGDKIISFRLGQFSLLWIDQMQRYNFDVDVVDCEWGAGIDLDVLKQKLVSDRSHSVKAVCVVHNETSTGVTNDIGAVRRVLDEANHPALLLVDGVSSIGAIDFRMDDWRVDVALTGSQKALSLPTGLGIVCASPKALEAAKRSKSTRVFFDWGDYLKFYEAGTYWPYTPSSQMLYGLRASLDMILNEEGLDNVIARHCRLAEATRQAVRAWGLTLCTKDPKWKSDTVTAVVVPSWINSNDIVKIAYKKYNLSLGVG

Gene3D: G3DSA:3.40.640.10
IPR015421
67-302 no description
Pyridoxal phosphate-dependent transferase, major r

EPILRAMNRSNEDHRSPAFPKLSKSVIDDVKEIFRTKTATSFIFPTTGTGAWESALTNTLSPGDKIISFRLGQFSLLWIDQMQRYNFDVDVVDCEWGAGIDLDVLKQKLVSDRSHSVKAVCVVHNETSTGVTNDIGAVRRVLDEANHPALLLVDGVSSIGAIDFRMDDWRVDVALTGSQKALSLPTGLGIVCASPKALEAAKRSKSTRVFFDWGDYLKFYEAGTYWPYTPSSQMLY

PatternScan: PS00595
IPR020578
237-257 AA_TRANSFER_CLASS_5
Aminotransferase class-V pyridoxal-phosphate bindi

VDVALTGSQKALSLPTGLGIV

Gene3D: G3DSA:3.90.1150.10
IPR015422
303-429 no description
Pyridoxal phosphate-dependent transferase, major r

GLRASLDMILNEEGLDNVIARHCRLAEATRQAVRAWGLTLCTKDPKWKSDTVTAVVVPSWINSNDIVKIAYKKYNLSLGVGLNKVAGKVFRIGHLGNVNELQLLGALAGVELCLMEVGYPVTLGSGV






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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