PRGDB00073982 (Ppa.875)

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Ppa.875
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 33591203 (AY339065)
Gene Class Unknown
Domain Type Ser-Thr Kinase
Gene Species Physcomitrella patens

Comment?

Physcomitrella patens shaggy-related protein kinase 1 (SK1) mRNA, complete cds

DNA Sequence

ATGTAGGACATGATGGTGGTGGGAAGGGTTGGAAGAGGTGGTGCCTCTTGGAAGCGTTGTTTTCTAAAGGTTGTGTTAACATAAGGAGCGCAGTTCCTTCCGTGTCATTTTGCTAAGATCTCCCTTGGGCAGCGCATCTGAGTCCATCCATTCTGATAGTGTTTCACTAGGGTGTGAGAAGGTATTCGCGGGGTCAGCTGATGGGCTCGTTTGAGGTATTACATTGGTAACGACCAGGTGTAGTGAAGAACGGCTTTGGAGGAGAGGGGAGAAACTCTGCGAAGTGGTTAAGTATGAATGAAGCGTGGAGGGGAAATGGAGGGAAGAGGAGATGGTGATGAGTGGAGCTTGTGGCAAGAGGTGATGCCGTCATCGTTGCCATGCATGTGATGTGCGGGGTGTAGTAGTTAGCTTCGACTGATAACTGAATATTGTTGTCACTCATACTTTTCGGCATTTAGAACTTCCGTAACGGGTACGGTCACCTGCAGCCAGGGGATGCTGCTCGAGTTATAGAGCTACCAAATTTAGGCACAGAAACGTGAAGTGTAGTTTTACTCTGGGAGTGGTGCGCCTTCTATGGCATCTGCAACTGCCGGTGTGACTAGCAGCACAAATATGATTGGAGGAGGAGCCCCAATCAAAGCAGGTTCTAGCGGCGTAGAATCATTACCGAAAGAAATGCACGACATGAAGCTCAGGGATGAGAAAGTTGACCATAGCGATGATAAGGAAATCGAGGCGTCAGTAGTAGCTGGGAATGGCACGGAGACTGGCCATATCATAGCTACCACAATTGGAGGGCGAAATGGGCAACCTAAGCAGACTATTAGCTACTGTGCAGAACGAGTTGTTGGCACTGGATCATTCGGGATCGTTTTCCAGGCGAAGTGTATCGAAACTGCGGAGACGGTGGCGATCAAGAAAGTGCTACAAGACAAACGATACAAGAATCGCGAGCTGCAGATCATGCGACTTTTTGACCACCCGAACATTGTAGCTCTAAAACACTGCTTCTTTTCGACGACGGATAAAGATGAACTGTATTTGAACCTGGTGCTGGAATATGTGCCTGAGACGGTGTATCGTATTGCAAAGCACTACAATCGCATGAACCAACGGATGCCTCTTCTATACGTAAAGTTGTACACTTATCAGATCTGCCGGTCTTTGGCGTATATTCATAACGGCATTGGTGTGTGTCACCGAGACATCAAGCCACAGAACCTGCTGGTGAATCCCCATACGCATCAACTGAAACTGTGTGACTTTGGCAGCGCCAAAGTTCTGGTGAAAGGGGAGCCCAATATTTCGTACATTTGTTCACGGTACTACCGTGCTCCTGAGCTGATTTTTGGAGCGACAGAGTACACGACTGCCATCGATATATGGTCGATGGGATGCGTGATGGCTGAACTCCTTCTGGGACAGCCTCTGTTCCCCGGAGAGAGTGGAGTAGATCAATTGGTGGAGATTATTAAGGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAAGTATTCCATAAACGCATGCCACCAGAAGCAGTCGACCTGGTTTCAAGACTTCTACAGTACTCTCCAAATCTGCGATGCAATGCTCTGGAAGCGTGTGTGCACCCTTTCTTTGATGAGTTAAGGGATCCTAACTGCCGCCTGCCGAACGGACGGCCACTTCCGCCTCTGTTCAATTTCAAACCTCAAGAGTTGAAAGGTGCAACTCCTGATATTCTGCATCGTTTGATACCCGAGCATGCTCGGAAGCAAAATCCGATGCTGGCTCTGTGAGGGGTATTTCGGAAGTCTACGGAAGACTGCTGCGTGAAAATATTTCCTCCGGTAGAGGTTGTCCGCTTTGTGGAAGCGTTTCGCAGGCACTTTTCTGTCTAATGTAAACACGTTGAGGGCCGAGTGTGTTTTGAACTCCTGCTTTTTCTCTTGTATTGGAGTAAAACGCTGTAGCATTTCACAGTTGTTACGAGTGATGGTCCTGTGGTAGTGAAGGTGTGCGGATATGATTCTGTTGTACCTCAGGACGATTAAGGATTTTAGGAATTTGCAAAGCTTCCTAATGTGGGTACTCGAGTGTACCAAGGAAAGGCTCTTAGTGCATGTAATTTATAGA


Protein sequences

Name Description Sequence
Ppa.875 translated coding region predicted by ESTScan from UniGene Ppa.875

MASATAGVTSSTNMIGGGAPIKAGSSGVESLPKEMHDMKLRDEKVDHSDDKEIEASVVAGNGTETGHIIATTIGGRNGQPKQTISYCAERVVGTGSFGIVFQAKCIETAETVAIKKVLQDKRYKNRELQIMRLFDHPNIVALKHCFFSTTDKDELYLNLVLEYVPETVYRIAKHYNRMNQRMPLLYVKLYTYQICRSLAYIHNGIGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSMGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKVFHKRMPPEAVDLVSRLLQYSPNLRCNALEACVHPFFDELRDPNCRLPNGRPLPPLFNFKPQELKGATPDILHRLIPEHARKQNPMLAL

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR24057
48-417 FAMILY NOT NAMED,GLYCOGEN SYNTHASE KINASE-3 ALPHA

SDDKEIEASVVAGNGTETGHIIATTIGGRNGQPKQTISYCAERVVGTGSFGIVFQAKCIETAETVAIKKVLQDKRYKNRELQIMRLFDHPNIVALKHCFFSTTDKDELYLNLVLEYVPETVYRIAKHYNRMNQRMPLLYVKLYTYQICRSLAYIHNGIGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSMGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKVFHKRMPPEAVDLVSRLLQYSPNLRCNALEACVHPFFDELRDPNCRLPNGRPLPPLFNFKPQELKGATPDILHRLIPEHARKQN

Gene3D: G3DSA:3.30.200.20
80-161 no description

PKQTISYCAERVVGTGSFGIVFQAKCIETAETVAIKKVLQDKRYKNRELQIMRLFDHPNIVALKHCFFSTTDKDELYLNLVL

superfamily: SSF56112
IPR011009
85-401 Protein kinase-like (PK-like)
Protein kinase-like domain

SYCAERVVGTGSFGIVFQAKCIETAETVAIKKVLQDKRYKNRELQIMRLFDHPNIVALKHCFFSTTDKDELYLNLVLEYVPETVYRIAKHYNRMNQRMPLLYVKLYTYQICRSLAYIHNGIGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSMGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKVFHKRMPPEAVDLVSRLLQYSPNLRCNALEACVHPFFDELRDPNCRLPNGRPLPPLFNFKPQELKGAT

ProfileScan: PS50011
IPR000719
86-370 PROTEIN_KINASE_DOM
Protein kinase, catalytic domain

YCAERVVGTGSFGIVFQAKCIETAETVAIKKVLQDKRYKNRELQIMRLFDHPNIVALKHCFFSTTDKDELYLNLVLEYVPETVYRIAKHYNRMNQRMPLLYVKLYTYQICRSLAYIHNGIGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSMGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKVFHKRMPPEAVDLVSRLLQYSPNLRCNALEACVHPFF

HMMSmart: SM00219
IPR020635
86-370 Tyrosine kinase, catalytic domain
Tyrosine-protein kinase, catalytic domain

YCAERVVGTGSFGIVFQAKCIETAETVAIKKVLQDKRYKNRELQIMRLFDHPNIVALKHCFFSTTDKDELYLNLVLEYVPETVYRIAKHYNRMNQRMPLLYVKLYTYQICRSLAYIHNGIGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSMGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKVFHKRMPPEAVDLVSRLLQYSPNLRCNALEACVHPFF

HMMSmart: SM00220
IPR002290
86-370 Serine/Threonine protein kinases, catalytic
Serine/threonine- / dual-specificity protein kinas

YCAERVVGTGSFGIVFQAKCIETAETVAIKKVLQDKRYKNRELQIMRLFDHPNIVALKHCFFSTTDKDELYLNLVLEYVPETVYRIAKHYNRMNQRMPLLYVKLYTYQICRSLAYIHNGIGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSMGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKVFHKRMPPEAVDLVSRLLQYSPNLRCNALEACVHPFF

HMMPfam: PF00069
IPR017442
87-370 Pkinase,Ser-thr
Serine/threonine-protein kinase-like domain

CAERVVGTGSFGIVFQAKCIETAETVAIKKVLQDKRYKNRELQIMRLFDHPNIVALKHCFFSTTDKDELYLNLVLEYVPETVYRIAKHYNRMNQRMPLLYVKLYTYQICRSLAYIHNGIGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSMGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKVFHKRMPPEAVDLVSRLLQYSPNLRCNALEACVHPFF

PatternScan: PS00107
IPR017441
92-116 PROTEIN_KINASE_ATP
Protein kinase, ATP binding site

VGTGSFGIVFQAKCIETAETVAIKK

Gene3D: G3DSA:1.10.510.10
162-376 no description

EYVPETVYRIAKHYNRMNQRMPLLYVKLYTYQICRSLAYIHNGIGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSMGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKVFHKRMPPEAVDLVSRLLQYSPNLRCNALEACVHPFFDELRDP

PatternScan: PS00108
IPR008271
207-219 PROTEIN_KINASE_ST
Serine/threonine-protein kinase, active site

VCHRDIKPQNLLV






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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