PRGDB00074225 (Ppa.16405)
| Ppa.16405 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 208386194 (DC949105) |
| Gene Class | Unknown |
| Domain Type | |
| Gene Species | Physcomitrella patens |
DNA Sequence
TGGACTCAACATTGCTTGAGCTCGCACAGTGACCAATCATATCATACTGAGTCATTAGACCTTACAGCAGTGACGATATGCCACCACACAACTCAAACCTACAAGTGGATTGCACCCTAAGTTGATAACCATACAAGTCTGATGAAACACCACAAAATGCTGAACCGCATATCGTGTTTACCAAACAATCTACTGTAAGTGAAGAAATCATATGCTTTTGCAAGATATGTTGTGCTATGTCATCTATTGGCTCAGGAACATTCCAAAAACCTCCACAGCAAGTGCTCCTACCCATCTTCAGAGTCTGAGCGAACGTCCTCTCCAACTTTTCCGGAATTTCGTAATTGCTGGTGCTCCAGATAATCCAGAAAGGAAAGTAGATCAGCCGCAAAAGCACCCACGATAGTACAAATAGGCCAAAGGAGACGCTGGCCCCCACCTCGCTACCACTGTATTTGCAGAGCTTCGCAGCTTCCATGAAAACATCACTTACATCATGAAGGGCAAGCACAATGGAACCTGCACGAAAGGACCCGGTGATATAAGAATAAGCGATGAGTCCAATTGTCACAATATGATGAGTCATCATAACATCAAAATCCTTCCTTCGAGTTTCCCAGAATAACAATGCCGCCACACTATATATGTAGAAGCCACATTGAAAGGTGTAGAACAACGTCAGCTGAAACTTCACAGTTTGATACGGCCATCCGTGCCAAAACGCANAGGTGTTGCCGAACCATGCCTCTTTGTAGGTATGAAGATANCAACACTTCCGTAG
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Ppa.16405 | translated coding region predicted by ESTScan from UniGene Ppa.16405 | LRKCXYLHTYKEAWFGNTXAFWHGWPYQTVKFQLTLFYTFQCGFYIYSVAALLFWETRRKDFDVMMTHHIVTIGLIAYSYITGSFRAGSIVLALHDVSDVFMEAAKLCKYSGSEVGASVSFGLFVLSWVLLRLIYFPFWIIWSTSNYEIPEKLERTFAQTLKMGRSTCCGGFWNVPEPIDDIAQHILQKHMISSLTVDCLVNTICGSAFCGVSSDLYGYQLRVQSTCRFELCGGISSLLXGLMTQYDMIGHCASSSNVESX |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| ProfileScan: PS50922 IPR006634
|
1-169 | TLC TRAM/LAG1/CLN8 homology domain
|
LRKCXYLHTYKEAWFGNTXAFWHGWPYQTVKFQLTLFYTFQCGFYIYSVAALLFWETRRKDFDVMMTHHIVTIGLIAYSYITGSFRAGSIVLALHDVSDVFMEAAKLCKYSGSEVGASVSFGLFVLSWVLLRLIYFPFWIIWSTSNYEIPEKLERTFAQTLKMGRSTCC |
| HMMSmart: SM00724 IPR006634
|
1-177 | TRAM, LAG1 and CLN8 homology domains. TRAM/LAG1/CLN8 homology domain
|
LRKCXYLHTYKEAWFGNTXAFWHGWPYQTVKFQLTLFYTFQCGFYIYSVAALLFWETRRKDFDVMMTHHIVTIGLIAYSYITGSFRAGSIVLALHDVSDVFMEAAKLCKYSGSEVGASVSFGLFVLSWVLLRLIYFPFWIIWSTSNYEIPEKLERTFAQTLKMGRSTCCGGFWNVPE |
| HMMPanther: PTHR12560 | 9-154 | FAMILY NOT NAMED,LONGEVITY ASSURANCE FACTOR 1 (LAG1) | TYKEAWFGNTXAFWHGWPYQTVKFQLTLFYTFQCGFYIYSVAALLFWETRRKDFDVMMTHHIVTIGLIAYSYITGSFRAGSIVLALHDVSDVFMEAAKLCKYSGSEVGASVSFGLFVLSWVLLRLIYFPFWIIWSTSNYEIPEKLE |
| HMMPfam: PF03798 IPR006634
|
20-148 | TRAM_LAG1_CLN8 TRAM/LAG1/CLN8 homology domain
|
AFWHGWPYQTVKFQLTLFYTFQCGFYIYSVAALLFWETRRKDFDVMMTHHIVTIGLIAYSYITGSFRAGSIVLALHDVSDVFMEAAKLCKYSGSEVGASVSFGLFVLSWVLLRLIYFPFWIIWSTSNYE |
| Seg: seg | 233-242 | seg | GGISSLLXGL |
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