PRGDB00074269 (Ppa.18614)

Ppa.18614
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	208364886 (DC957909)
Gene Class	Unknown
Domain Type
Gene Species	Physcomitrella patens
	Comment?

DC957909 ppgs full-length cDNA library; green sporophytes Physcomitrella patens subsp. patens cDNA clone ppgs2k05 3', mRNA sequence

DNA Sequence

TAAAATTTATACAAAGTTAAAGCCAATTCAGGGTAGATCGTACTTGATTTAGTCTAAAGATCATATTAAACTATTTCATTTGTTTGGCTTTTAGAAACATGACTAGATTGTTTTTGTGCACCATTCTTTTCCAACTCTATTGAAGCAAAATTGTTGTTTGTAGCCTTAGTAGGATTGCCTTTCTCATCTCCATCTCTTGGTGTTGCATTTCTATAAAAAGCATATAAGGCTAATTGGGCAATACCGGATGCAGCACCCAATCCATTGGGAATAGCAATGTAGATGTCCACTCCACCAATAAATGCGTATCCAAACCACACAAGTCCATTGATAAAATTGAACAATGAAAGCAAAAATGGCATGTACTTTACACTTCGGGTTTGAATTACCATTCTCATGATAGAGAGAGGAGACGCATACATCCCTACCGCAAAAACAGCACAAAGAGTCCCAATGACAGTCTTGCGTTTCTTCTTGTCCTCTATCAATTCCAATACAAGAACCGTCACCGCAATAAAAGAAACCAGAACTAACATTAAGAGCTTCATGACCTTCATCCTTATTTTCTTTTCTGCATTCAGCAAATATAATGTGAGGAATAAAAACTCAATGAAACAGCCAGCTGCATTGATGGTCACAACTAGCACTTGAAACTCCACCACCGGAAGGCCATATACAACCCACAGTAGGCAATTGAGCAATGTACACACATACGGAAAGCCAGAGTAATCTGCCACAGTTTTCTTCTTGACAATTTTGATGAAAGTGGGGATTGGCGACGTAAATAGACAGATCGCAGTGATGTTCCCCAAGACTCCAAGAATTACTTTGAAATCAACGTGACCCATGTTTGCCGCCGCANGTTCCCTCTCGCTCGAGTCTGCTCTGATGAAAAAGTGGTACAATCCACACCTGGACTCACAGTGAANAGCAAGCAACTCCACGAAACCTTCGT

Protein sequences

Name	Description	Sequence
Ppa.18614	translated coding region predicted by ESTScan from UniGene Ppa.18614	XEGFVELLAXHCESRCGLYHFFIRADSSEREXAAANMGHVDFKVILGVLGNITAICLFTSPIPTFIKIVKKKTVADYSGFPYVCTLLNCLLWVVYGLPVVEFQVLVVTINAAGCFIEFLFLTLYLLNAEKKIRMKVMKLLMLVLVSFIAVTVLVLELIEDKKKRKTVIGTLCAVFAVGMYASPLSIMRMVIQTRSVKYMPFLLSLFNFINGLVWFGYAFIGGVDIYIAIPNGLGAASGIAQLALYAFYRNATPRDGDEKGNPTKATNNNFASIELEKNGAQKQSSHVSKSQTNEIV

Domains

Domain	Start-End	Description	Sequence
Seg: seg	24-35	seg	RADSSEREXAAA
HMMPanther: PTHR10791 IPR004316	45-276	RAG1-ACTIVATING PROTEIN 1 RAG1-activating protein-1-related	ILGVLGNITAICLFTSPIPTFIKIVKKKTVADYSGFPYVCTLLNCLLWVVYGLPVVEFQVLVVTINAAGCFIEFLFLTLYLLNAEKKIRMKVMKLLMLVLVSFIAVTVLVLELIEDKKKRKTVIGTLCAVFAVGMYASPLSIMRMVIQTRSVKYMPFLLSLFNFINGLVWFGYAFIGGVDIYIAIPNGLGAASGIAQLALYAFYRNATPRDGDEKGNPTKATNNNFASIELE
HMMPfam: PF03083 IPR004316	45-130	MtN3_slv RAG1-activating protein-1-related	ILGVLGNITAICLFTSPIPTFIKIVKKKTVADYSGFPYVCTLLNCLLWVVYGLPVVEFQVLVVTINAAGCFIEFLFLTLYLLNAEK
Seg: seg	134-145	seg	MKVMKLLMLVLV
HMMPfam: PF03083 IPR004316	167-251	MtN3_slv RAG1-activating protein-1-related	VIGTLCAVFAVGMYASPLSIMRMVIQTRSVKYMPFLLSLFNFINGLVWFGYAFIGGVDIYIAIPNGLGAASGIAQLALYAFYRNA

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Analyses

Blast

Blast matches against Reference R-Genes. Show