PRGDB00074271 (Ppa.18828)

From PRG Wiki
Jump to: navigation, search
Ppa.18828
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 208349823 (DC905947)
Gene Class Unknown
Domain Type
Gene Species Physcomitrella patens

Comment?

DC905947 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp. patens cDNA clone ppaa14d06 5', mRNA sequence

DNA Sequence

CTCttttttttttCTCTCNGGGNGGGGCTCGCAGNAGCAGGGTGCCCTtccctcgtctctctctcgctgngtctccgaangtcnctgnatctctctcncactctcCCAGGGACTTATTTAGNCTCCAANACGGTTCATTCCCATCGCTNACGTTCCNGCTGCTNATTTTGNATTTAAGCCCACGTCTCAAGCTNGTTGCCACATTCCATTCCTCNACAGGATTTGCCTCTCNACCAGTCGTCGCTNACCTTCACCATTGNAGCCNGCGTCCNAAANGGCTAAGGGCCAAGTCGTTTGCGTAACCGGGGCAAANGGGTTCATTGCGTCTTGGTTGGNGAAGTCGTTACNGGAAAGGGGCTACACTGTCCAAGGAACAGTCCGCAACCNAAAAAAATCTAANCATCNATTGAANTTGCCNGGCGCCAATGAGCGTCTCGAGCTCATCNAAGCCAATCTTCTCGNACCCNAAGCCTTCAATTCNGCTGNACATGGNTGTCANGGNGTCTTCNACACGGCCTCGCCTTTCCATTTCAACATCACCNACCCTGATAGTCAGTTGATTGAGCCACCANTGAAGGGAACACTGAACGTCTTANAATCTTGCGCCAAGGCAGGAACNAAAAAAATTGTGCTCACTTCCTCAGTTGCAGCTGTCGCTTANAGTCCNAAACGGGCTGGGGCTAGCGTTGTGNACAANACCTTCTTC


Protein sequences

Name Description Sequence
Ppa.18828 translated coding region predicted by ESTScan from UniGene Ppa.18828

XAKGQVVCVTGAXGFIASWLXKSLXERGYTVQGTVRNXKKSXHXLXLPGANERLELIXANLLXPXAFNSAXHGCXGVFXTASPFHFNITXPDSQLIEPPXKGTLNVLXSCAKAGTKKIVLTSSVAAVAXSPKRAGASVVXXTFF

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR10366:SF9
2-133 CINNAMOYL-COA REDUCTASE,CINNAMOYL-COA REDUCTASE

AKGQVVCVTGAXGFIASWLXKSLXERGYTVQGTVRNXKKSXHXLXLPGANERLELIXANLLXPXAFNSAXHGCXGVFXTASPFHFNITXPDSQLIEPPXKGTLNVLXSCAKAGTKKIVLTSSVAAVAXSPKR

HMMPanther: PTHR10366
2-133 FAMILY NOT NAMED,NAD DEPENDENT EPIMERASE/DEHYDRATASE

AKGQVVCVTGAXGFIASWLXKSLXERGYTVQGTVRNXKKSXHXLXLPGANERLELIXANLLXPXAFNSAXHGCXGVFXTASPFHFNITXPDSQLIEPPXKGTLNVLXSCAKAGTKKIVLTSSVAAVAXSPKR

superfamily: SSF51735
3-131 NAD(P)-binding Rossmann-fold domains

KGQVVCVTGAXGFIASWLXKSLXERGYTVQGTVRNXKKSXHXLXLPGANERLELIXANLLXPXAFNSAXHGCXGVFXTASPFHFNITXPDSQLIEPPXKGTLNVLXSCAKAGTKKIVLTSSVAAVAXSP

Gene3D: G3DSA:3.40.50.720
IPR016040
5-128 no description
NAD(P)-binding domain

QVVCVTGAXGFIASWLXKSLXERGYTVQGTVRNXKKSXHXLXLPGANERLELIXANLLXPXAFNSAXHGCXGVFXTASPFHFNITXPDSQLIEPPXKGTLNVLXSCAKAGTKKIVLTSSVAAVA

HMMPfam: PF01370
IPR001509
7-127 Epimerase
NAD-dependent epimerase/dehydratase

VCVTGAXGFIASWLXKSLXERGYTVQGTVRNXKKSXHXLXLPGANERLELIXANLLXPXAFNSAXHGCXGVFXTASPFHFNITXPDSQLIEPPXKGTLNVLXSCAKAGTKKIVLTSSVAAV

Seg: seg
122-130 seg

SSVAAVAXS






List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


Personal tools
Namespaces

Variants
Actions
PRGDB
META-SPECIES
Wiki
Toolbox