PRGDB00074276 (Ppe.620)
Ppe.620 | |
---|---|
Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
GenBank | 22478550 (BU039796) |
Gene Class | TNL |
Domain Type | NBS, TIR, LRR |
Gene Species | Prunus persica |
DNA Sequence
GAAAACCTAAGGGAAGTTCTCATTCTCCCTATTTTTTCCACTTGTTTTCTCTATATTTTCCAGACTTTGACAGTTCTATGGTCATAGTTACTCTCTGGATTATAATTGTCTataaaaataaataaatgaacaaaaaaacaagaaaagaagaaagCTTCAGTTCTTACCCATCGTGTAAATGCCACCCAGAGAGATTGGAAACTTGAGTAAGTGCATCTCTCCATCTTTGCACATTCTGTTTATTGTCTTTAAAGGTTTCTTCATGCTTAGAGAAGGCTTCCCCAAAATCTGCTTTCTGTTTTCGTACCTCGGATGGATCCACATGATAGAAAACTGGGAGTATTGTTTGTCCCATCAGGTTCATGCATTCAACAGCCTTTACAAGCTCATCCAAGCACCATGTAGAATTGGCATAGTTTCGTGAAAGAATGACAATTACATATCTTGATGCTTCGATTGCTTTCAAGAGTTTTGGAGCTATGGGCTTTCCCCTCTCAAGTTCTTCATCATCTCTAAATGTGAATATTCCTTTCTGTATCAGAGAAGTATACAGAAAGTCTGTGAAATTTGTGCGGGTGTCTTCTCCTCTGAAACTGAGGAACACATCGTATGTCCATCGAGGGGTCGGAGGagaagaagaagaagatgaaga
Protein sequences
Name | Description | Sequence |
---|---|---|
Ppe.620 | translated coding region predicted by ESTScan from UniGene Ppe.620 | SSSSSSSPPTPRWTYDVFLSFRGEDTRTNFTDFLYTSLIQKGIFTFRDDEELERGKPIAPKLLKAIEASRYVIVILSRNYANSTWCLDELVKAVECMNLMGQTILPVFYHVDPSEVRKQKADFGEAFSKHEETFKDNKQNVQRWRDALTQVSNLSGWHLHDG |
Domains
Domain | Start-End | Description | Sequence
|
---|---|---|---|
Seg: seg | 1-7 | seg | SSSSSSS |
superfamily: SSF52200 IPR000157
|
3-157 | Toll/Interleukin receptor TIR domain Toll-Interleukin receptor
|
SSSSSPPTPRWTYDVFLSFRGEDTRTNFTDFLYTSLIQKGIFTFRDDEELERGKPIAPKLLKAIEASRYVIVILSRNYANSTWCLDELVKAVECMNLMGQTILPVFYHVDPSEVRKQKADFGEAFSKHEETFKDNKQNVQRWRDALTQVSNLSGW |
Gene3D: G3DSA:3.40.50.10140 | 12-148 | no description | RWTYDVFLSFRGEDTRTNFTDFLYTSLIQKGIFTFRDDEELERGKPIAPKLLKAIEASRYVIVILSRNYANSTWCLDELVKAVECMNLMGQTILPVFYHVDPSEVRKQKADFGEAFSKHEETFKDNKQNVQRWRDAL |
ProfileScan: PS50104 IPR000157
|
13-154 | TIR Toll-Interleukin receptor
|
WTYDVFLSFRGEDTRTNFTDFLYTSLIQKGIFTFRDDEELERGKPIAPKLLKAIEASRYVIVILSRNYANSTWCLDELVKAVECMNLMGQTILPVFYHVDPSEVRKQKADFGEAFSKHEETFKDNKQNVQRWRDALTQVSNL |
HMMSmart: SM00255 IPR000157
|
14-154 | Toll Toll/interleukin-1 receptor homology (TIR) domain
|
TYDVFLSFRGEDTRTNFTDFLYTSLIQKGIFTFRDDEELERGKPIAPKLLKAIEASRYVIVILSRNYANSTWCLDELVKAVECMNLMGQTILPVFYHVDPSEVRKQKADFGEAFSKHEETFKDNKQNVQRWRDALTQVSNL |
HMMPfam: PF01582 IPR000157
|
17-149 | TIR Toll-Interleukin receptor
|
VFLSFRGEDTRTNFTDFLYTSLIQKGIFTFRDDEELERGKPIAPKLLKAIEASRYVIVILSRNYANSTWCLDELVKAVECMNLMGQTILPVFYHVDPSEVRKQKADFGEAFSKHEETFKDNKQNVQRWRDALT |
HMMPanther: PTHR23155:SF300 | 18-156 | DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE | FLSFRGEDTRTNFTDFLYTSLIQKGIFTFRDDEELERGKPIAPKLLKAIEASRYVIVILSRNYANSTWCLDELVKAVECMNLMGQTILPVFYHVDPSEVRKQKADFGEAFSKHEETFKDNKQNVQRWRDALTQVSNLSG |
HMMPanther: PTHR23155 | 18-156 | FAMILY NOT NAMED,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | FLSFRGEDTRTNFTDFLYTSLIQKGIFTFRDDEELERGKPIAPKLLKAIEASRYVIVILSRNYANSTWCLDELVKAVECMNLMGQTILPVFYHVDPSEVRKQKADFGEAFSKHEETFKDNKQNVQRWRDALTQVSNLSG |
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