PRGDB00074276 (Ppe.620)

Ppe.620
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	22478550 (BU039796)
Gene Class	TNL
Domain Type	NBS, TIR, LRR
Gene Species	Prunus persica
	Comment?

PP_LEa0003O09f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0003O09f, mRNA sequence

DNA Sequence

GAAAACCTAAGGGAAGTTCTCATTCTCCCTATTTTTTCCACTTGTTTTCTCTATATTTTCCAGACTTTGACAGTTCTATGGTCATAGTTACTCTCTGGATTATAATTGTCTataaaaataaataaatgaacaaaaaaacaagaaaagaagaaagCTTCAGTTCTTACCCATCGTGTAAATGCCACCCAGAGAGATTGGAAACTTGAGTAAGTGCATCTCTCCATCTTTGCACATTCTGTTTATTGTCTTTAAAGGTTTCTTCATGCTTAGAGAAGGCTTCCCCAAAATCTGCTTTCTGTTTTCGTACCTCGGATGGATCCACATGATAGAAAACTGGGAGTATTGTTTGTCCCATCAGGTTCATGCATTCAACAGCCTTTACAAGCTCATCCAAGCACCATGTAGAATTGGCATAGTTTCGTGAAAGAATGACAATTACATATCTTGATGCTTCGATTGCTTTCAAGAGTTTTGGAGCTATGGGCTTTCCCCTCTCAAGTTCTTCATCATCTCTAAATGTGAATATTCCTTTCTGTATCAGAGAAGTATACAGAAAGTCTGTGAAATTTGTGCGGGTGTCTTCTCCTCTGAAACTGAGGAACACATCGTATGTCCATCGAGGGGTCGGAGGagaagaagaagaagatgaaga

Protein sequences

Name	Description	Sequence
Ppe.620	translated coding region predicted by ESTScan from UniGene Ppe.620	SSSSSSSPPTPRWTYDVFLSFRGEDTRTNFTDFLYTSLIQKGIFTFRDDEELERGKPIAPKLLKAIEASRYVIVILSRNYANSTWCLDELVKAVECMNLMGQTILPVFYHVDPSEVRKQKADFGEAFSKHEETFKDNKQNVQRWRDALTQVSNLSGWHLHDG

Domains

Domain	Start-End	Description	Sequence
Seg: seg	1-7	seg	SSSSSSS
superfamily: SSF52200 IPR000157	3-157	Toll/Interleukin receptor TIR domain Toll-Interleukin receptor	SSSSSPPTPRWTYDVFLSFRGEDTRTNFTDFLYTSLIQKGIFTFRDDEELERGKPIAPKLLKAIEASRYVIVILSRNYANSTWCLDELVKAVECMNLMGQTILPVFYHVDPSEVRKQKADFGEAFSKHEETFKDNKQNVQRWRDALTQVSNLSGW
Gene3D: G3DSA:3.40.50.10140	12-148	no description	RWTYDVFLSFRGEDTRTNFTDFLYTSLIQKGIFTFRDDEELERGKPIAPKLLKAIEASRYVIVILSRNYANSTWCLDELVKAVECMNLMGQTILPVFYHVDPSEVRKQKADFGEAFSKHEETFKDNKQNVQRWRDAL
ProfileScan: PS50104 IPR000157	13-154	TIR Toll-Interleukin receptor	WTYDVFLSFRGEDTRTNFTDFLYTSLIQKGIFTFRDDEELERGKPIAPKLLKAIEASRYVIVILSRNYANSTWCLDELVKAVECMNLMGQTILPVFYHVDPSEVRKQKADFGEAFSKHEETFKDNKQNVQRWRDALTQVSNL
HMMSmart: SM00255 IPR000157	14-154	Toll Toll/interleukin-1 receptor homology (TIR) domain	TYDVFLSFRGEDTRTNFTDFLYTSLIQKGIFTFRDDEELERGKPIAPKLLKAIEASRYVIVILSRNYANSTWCLDELVKAVECMNLMGQTILPVFYHVDPSEVRKQKADFGEAFSKHEETFKDNKQNVQRWRDALTQVSNL
HMMPfam: PF01582 IPR000157	17-149	TIR Toll-Interleukin receptor	VFLSFRGEDTRTNFTDFLYTSLIQKGIFTFRDDEELERGKPIAPKLLKAIEASRYVIVILSRNYANSTWCLDELVKAVECMNLMGQTILPVFYHVDPSEVRKQKADFGEAFSKHEETFKDNKQNVQRWRDALT
HMMPanther: PTHR23155:SF300	18-156	DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE	FLSFRGEDTRTNFTDFLYTSLIQKGIFTFRDDEELERGKPIAPKLLKAIEASRYVIVILSRNYANSTWCLDELVKAVECMNLMGQTILPVFYHVDPSEVRKQKADFGEAFSKHEETFKDNKQNVQRWRDALTQVSNLSG
HMMPanther: PTHR23155	18-156	FAMILY NOT NAMED,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	FLSFRGEDTRTNFTDFLYTSLIQKGIFTFRDDEELERGKPIAPKLLKAIEASRYVIVILSRNYANSTWCLDELVKAVECMNLMGQTILPVFYHVDPSEVRKQKADFGEAFSKHEETFKDNKQNVQRWRDALTQVSNLSG

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Analyses

Blast

Blast matches against Reference R-Genes. Show