PRGDB00074305 (Ppe.7261)

Ppe.7261
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	89002251 (DN553172)
Gene Class	Unknown
Domain Type
Gene Species	Prunus persica
	Comment?

PPL04-D01 Prunus persica L. leaf tissue, Plum Pox Virus infected Prunus persica cDNA, mRNA sequence

DNA Sequence

GAGGGCGCACACTATAAAAGCAATATGCATTGTTCACAATGAAACAGCCACTGGAGTTACTAATAACTTAGCTCAAGTGAGAAGAATACTTGATGAGTACAGACATCCAGCTCTCTTTCTTGTTGATGGAGTGTCTTCCATATGTGCTCTTGACTTCCGTATGGATGAATGGGGAGTAGATGTAGCTTTAACTGGTTCTCAGAAAGCTCTTTCTCTCCCCACTGGCATTGGGATTGTGTGTGCAAGCCCAAAAGCTCTAGAGGCATCTAAAACTGCAAAGTCAGTAAGAGTTTTCTTTGACTGGAATGATTACTTGAAGTTCTATAAGTTGGGAACATACTGGCCATATACCCCTTCCATCCAGTTGCTGTATGGACTGCGCACAGCACTTGATCTTATTTTTGAGGAAGGACTTGACAACGTGATTGCAAGACACAGCCGTTTGGGAAAAGCAACAAGGCTTGCTGTGGAGGCATGGGGCTTGAAGAACTGCACCCAAAGTGAGGAATGGTTCAGTGAC

Protein sequences

Name	Description	Sequence
Ppe.7261	translated coding region predicted by ESTScan from UniGene Ppe.7261	XRAHTIKAICIVHNETATGVTNNLAQVRRILDEYRHPALFLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGIGIVCASPKALEASKTAKSVRVFFDWNDYLKFYKLGTYWPYTPSIQLLYGLRTALDLIFEEGLDNVIARHSRLGKATRLAVEAWGLKNCTQSEEWFSD

Domains

Domain	Start-End	Description	Sequence
superfamily: SSF53383 IPR015424	2-173	PLP-dependent transferases Pyridoxal phosphate-dependent transferase, major d	RAHTIKAICIVHNETATGVTNNLAQVRRILDEYRHPALFLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGIGIVCASPKALEASKTAKSVRVFFDWNDYLKFYKLGTYWPYTPSIQLLYGLRTALDLIFEEGLDNVIARHSRLGKATRLAVEAWGLKNCTQSEEWFS
HMMPfam: PF00266 IPR000192	4-162	Aminotran_5 Aminotransferase, class V/Cysteine desulfurase	HTIKAICIVHNETATGVTNNLAQVRRILDEYRHPALFLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGIGIVCASPKALEASKTAKSVRVFFDWNDYLKFYKLGTYWPYTPSIQLLYGLRTALDLIFEEGLDNVIARHSRLGKATRLAVEAWGL
HMMPanther: PTHR21152:SF7	4-174	SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED	HTIKAICIVHNETATGVTNNLAQVRRILDEYRHPALFLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGIGIVCASPKALEASKTAKSVRVFFDWNDYLKFYKLGTYWPYTPSIQLLYGLRTALDLIFEEGLDNVIARHSRLGKATRLAVEAWGLKNCTQSEEWFSD
HMMPanther: PTHR21152	4-174	FAMILY NOT NAMED,AMINOTRANSFERASE CLASS V	HTIKAICIVHNETATGVTNNLAQVRRILDEYRHPALFLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGIGIVCASPKALEASKTAKSVRVFFDWNDYLKFYKLGTYWPYTPSIQLLYGLRTALDLIFEEGLDNVIARHSRLGKATRLAVEAWGLKNCTQSEEWFSD
Gene3D: G3DSA:3.40.640.10 IPR015421	4-125	no description Pyridoxal phosphate-dependent transferase, major r	HTIKAICIVHNETATGVTNNLAQVRRILDEYRHPALFLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGIGIVCASPKALEASKTAKSVRVFFDWNDYLKFYKLGTYWPYTPSIQLLY
PatternScan: PS00595 IPR020578	60-80	AA_TRANSFER_CLASS_5 Aminotransferase class-V pyridoxal-phosphate bindi	VDVALTGSQKALSLPTGIGIV
Gene3D: G3DSA:3.90.1150.10 IPR015422	126-172	no description Pyridoxal phosphate-dependent transferase, major r	GLRTALDLIFEEGLDNVIARHSRLGKATRLAVEAWGLKNCTQSEEWF

List of Contributions

There has not been any contribution yet.

Add a Contribution

Analyses

Blast

Blast matches against Reference R-Genes. Show