PRGDB00075170 (Pth.4618)
| Pth.4618 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 224141610 (XM_002324124) |
| Gene Class | Unknown |
| Domain Type | Ser-Thr Kinase |
| Gene Species | Populus trichocarpa |
DNA Sequence
CTGAAAAACACTTCTCTCTCTAAAAATCTATTTCCAATGGCGATTGCTGCGGAGGCCCAGCCCCAAGAGAAGGCGAGAACAGATGTATCAGGGGCAGAGAAGAAGAGATGGACGCTTAACGATTTTGATATGGGAAAGCCACTTGGGCGTGGAAAGTTTGGTCATGTTTACTTAGCCAGAGAAAAAAGGAGCAATCATATTGTGGCTTTGAAGGTTCTGTTTAAGAGTCAGTTGCAACAGTCACAGGTTGAACATCAGCTCCGTCGCGAAGTTGAAATTCAGAGTCATCTTAGACATCCCAATATATTGCGCCTTTACGGTTACTTTTATGATCAGAAACGAGTTTATTTGATATTAGAATATGCAGCCAAAGGTGAACTCTACAAAGAATTGCAGAGGTGTAAATACTTTAGCGAAAGACGTGCTGCTACTTATGTTGCGTCATTAGCCAGGGCACTGATTTATTGTCACAGCAAGCATGTGATACACAGAGACATCAAGCCAGAGAACCTGTTAATTGGTGCACAGGGTGAGCTCAAGATTGCAGACTTTGGTTGGTCAGTGCACACTTTTAACCGCAGGCGTACGATGTGTGGTACATTGGACTACCTCCCACCAGAGATGGTGCAAAGTGTAGAGCATGATGCTAGTGTTGATATATGGAGCCTGGGTGTTTTATGCTATGAGTTTTTATATGGCATCCCCCCGTTTGAGGCCAAGGAACACTCAGACACATACAAAAGGATTGTGCAAGTGGATCTGAAGTTCCCTCCTAAACCAATTGTCTCTTCTGCTGCAAAGGACCTTATTAGTCAGATGCTTGTCAAGGATTCTGTTGAGCGACTACCATTACATAAGCTGCTTGAGCATCCCTGGATCGTTCAAAATGTTGATCCCTCTGGCATCTTTAGGGGTTGAATTGTCTTTATAAGATGCTTTACTACTTCAGGGGAATCAATGGTGTGAGATTTTGGAGAAGAACATGAAGAACCTTTGGCAAGGTCTATGAATTTGTGAAGAACCGGATCACAGTATGACTTGTATGAGTTAATTGCCCATGTTGTCTCCAAGCTCTGGTGAACAAAAAAACATTGGTTTATTATGTTAATATAGAGCCCATATTCTTTTCTTTTAA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Pth.4618 | translated coding region predicted by ESTScan from UniGene Pth.4618 | LKNTSLSKNLFPMAIAAEAQPQEKARTDVSGAEKKRWTLNDFDMGKPLGRGKFGHVYLAREKRSNHIVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHPNILRLYGYFYDQKRVYLILEYAAKGELYKELQRCKYFSERRAATYVASLARALIYCHSKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVQSVEHDASVDIWSLGVLCYEFLYGIPPFEAKEHSDTYKRIVQVDLKFPPKPIVSSAAKDLISQMLVKDSVERLPLHKLLEHPWIVQNVDPSGIFRG |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR24350 | 17-296 | FAMILY NOT NAMED,SERINE/THREONINE-PROTEIN KINASE IAL-RELATED | AEAQPQEKARTDVSGAEKKRWTLNDFDMGKPLGRGKFGHVYLAREKRSNHIVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHPNILRLYGYFYDQKRVYLILEYAAKGELYKELQRCKYFSERRAATYVASLARALIYCHSKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVQSVEHDASVDIWSLGVLCYEFLYGIPPFEAKEHSDTYKRIVQVDLKFPPKPIVSSAAKDLISQMLVKDSVERLPLHKLLEHPWIVQN |
| Gene3D: G3DSA:3.30.200.20 | 18-139 | no description | EAQPQEKARTDVSGAEKKRWTLNDFDMGKPLGRGKFGHVYLAREKRSNHIVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHPNILRLYGYFYDQKRVYLILEYAAKGELYKELQRCKYFSE |
| superfamily: SSF56112 IPR011009
|
28-300 | Protein kinase-like (PK-like) Protein kinase-like domain
|
DVSGAEKKRWTLNDFDMGKPLGRGKFGHVYLAREKRSNHIVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHPNILRLYGYFYDQKRVYLILEYAAKGELYKELQRCKYFSERRAATYVASLARALIYCHSKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVQSVEHDASVDIWSLGVLCYEFLYGIPPFEAKEHSDTYKRIVQVDLKFPPKPIVSSAAKDLISQMLVKDSVERLPLHKLLEHPWIVQNVDPS |
| ProfileScan: PS50011 IPR000719
|
42-293 | PROTEIN_KINASE_DOM Protein kinase, catalytic domain
|
FDMGKPLGRGKFGHVYLAREKRSNHIVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHPNILRLYGYFYDQKRVYLILEYAAKGELYKELQRCKYFSERRAATYVASLARALIYCHSKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVQSVEHDASVDIWSLGVLCYEFLYGIPPFEAKEHSDTYKRIVQVDLKFPPKPIVSSAAKDLISQMLVKDSVERLPLHKLLEHPWI |
| HMMSmart: SM00219 IPR020635
|
42-288 | Tyrosine kinase, catalytic domain Tyrosine-protein kinase, catalytic domain
|
FDMGKPLGRGKFGHVYLAREKRSNHIVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHPNILRLYGYFYDQKRVYLILEYAAKGELYKELQRCKYFSERRAATYVASLARALIYCHSKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVQSVEHDASVDIWSLGVLCYEFLYGIPPFEAKEHSDTYKRIVQVDLKFPPKPIVSSAAKDLISQMLVKDSVERLPLHKLL |
| HMMSmart: SM00220 IPR002290
|
42-293 | Serine/Threonine protein kinases, catalytic Serine/threonine- / dual-specificity protein kinas
|
FDMGKPLGRGKFGHVYLAREKRSNHIVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHPNILRLYGYFYDQKRVYLILEYAAKGELYKELQRCKYFSERRAATYVASLARALIYCHSKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVQSVEHDASVDIWSLGVLCYEFLYGIPPFEAKEHSDTYKRIVQVDLKFPPKPIVSSAAKDLISQMLVKDSVERLPLHKLLEHPWI |
| HMMPfam: PF00069 IPR017442
|
44-293 | Pkinase,Ser-thr Serine/threonine-protein kinase-like domain
|
MGKPLGRGKFGHVYLAREKRSNHIVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHPNILRLYGYFYDQKRVYLILEYAAKGELYKELQRCKYFSERRAATYVASLARALIYCHSKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVQSVEHDASVDIWSLGVLCYEFLYGIPPFEAKEHSDTYKRIVQVDLKFPPKPIVSSAAKDLISQMLVKDSVERLPLHKLLEHPWI |
| PatternScan: PS00107 IPR017441
|
48-71 | PROTEIN_KINASE_ATP Protein kinase, ATP binding site
|
LGRGKFGHVYLAREKRSNHIVALK |
| Gene3D: G3DSA:1.10.510.10 | 140-297 | no description | RRAATYVASLARALIYCHSKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVQSVEHDASVDIWSLGVLCYEFLYGIPPFEAKEHSDTYKRIVQVDLKFPPKPIVSSAAKDLISQMLVKDSVERLPLHKLLEHPWIVQNV |
| PatternScan: PS00108 IPR008271
|
161-173 | PROTEIN_KINASE_ST Serine/threonine-protein kinase, active site
|
VIHRDIKPENLLI |
List of Contributions
There has not been any contribution yet.
