PRGDB00075171 (Pth.4619)

From PRG Wiki
Jump to: navigation, search
Pth.4619
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 224081906 (XM_002306487)
Gene Class Unknown
Domain Type
Gene Species Populus trichocarpa

Comment?

Populus trichocarpa predicted protein, mRNA

DNA Sequence

ATTCGTACCTTCCAAATCAATCGGTGAGTATAAAATCTCCCATCCTCAAAAACTAGGGTATAAAAGGGTTCAAATCCTCTCCGCCCAAAAAGCTCTTCCCTCGAATAAACGTTAAATTAAACCCACAACAAAGCATCAACTCCTCCAATCGATCTCTGGGAATGGCGACGTTTGAGCTGTATAGAAGATCGACGATCGGGATGTGCTTGACGGAGACTCTTGATGACATGGTTCAAAACGGTACTCTCAGTCCTGAGCTAGCCTTCCAGGTTCTTGTTCAGTTTGATAAGTCCATGACTGAAGCTTTGGAAACAAAAGTGAAGAGCAAAGTCTCAATTAAGGGACATCTGCATACCTACAGATTCTGCGACAATGTTTGGACCTTCATTTTACAGGATGCTATGTTTAAGAATGAGGACACGCAGGAGAATGTTGGGCGGGTTAAAATAGTGGCATGCGACTCAAAGCTGCTTACGCAATGAGGCTGTAGAGGTGGTTATTTGTAAAGGTGGGATGGCAGCAAGATGGGATGCGAGTGTTGTTTACTGTGGAAGACTGGACACAGCATGTGTAACCCATCAACAACCTTTTCCAAGTTCCAGCTTTTGTTATTTGATGATGTATTATTTTGACGACGGTGATTGTTCGTTTTATTTAATCTGCTAAGAAGATGGTATACTCATGGAATAGGGTAGCATCATCAAACTACAATTTCGTTGGTGGCTGTATTTGTTTACGTATTATTAATCGTTTCTCGTGCTCGGATGCAAGTGCTTGCATGAAGGCAACGGGTTAAAAGATTGGCACCTCTAAATTATAAAAAATTAGTTAATCAA


Protein sequences

Name Description Sequence
Pth.4619 translated coding region predicted by ESTScan from UniGene Pth.4619

MATFELYRRSTIGMCLTETLDDMVQNGTLSPELAFQVLVQFDKSMTEALETKVKSKVSIKGHLHTYRFCDNVWTFILQDAMFKNEDTQENVGRVKIVACDSKLLTQ

Domains

Domain Start-End Description Sequence

BlastProDom: PD009224
IPR015872
1-50 TFIIA_gsu_N
Transcription initiation factor IIA, gamma subunit

MATFELYRRSTIGMCLTETLDDMVQNGTLSPELAFQVLVQFDKSMTEALE

HMMPIR: PIRSF009415
IPR003194
1-106 Hum_TFIIA_gamma
Transcription initiation factor IIA, gamma subunit

MATFELYRRSTIGMCLTETLDDMVQNGTLSPELAFQVLVQFDKSMTEALETKVKSKVSIKGHLHTYRFCDNVWTFILQDAMFKNEDTQENVGRVKIVACDSKLLTQ

HMMPanther: PTHR10966
IPR003194
1-103 TFIIA_gamma
Transcription initiation factor IIA, gamma subunit

MATFELYRRSTIGMCLTETLDDMVQNGTLSPELAFQVLVQFDKSMTEALETKVKSKVSIKGHLHTYRFCDNVWTFILQDAMFKNEDTQENVGRVKIVACDSKL

Gene3D: G3DSA:1.10.287.190
IPR015872
2-54 TFIIA_gsu_N
Transcription initiation factor IIA, gamma subunit

ATFELYRRSTIGMCLTETLDDMVQNGTLSPELAFQVLVQFDKSMTEALETKVK

HMMPfam: PF02268
IPR015872
3-50 TFIIA_gamma_N
Transcription initiation factor IIA, gamma subunit

TFELYRRSTIGMCLTETLDDMVQNGTLSPELAFQVLVQFDKSMTEALE

superfamily: SSF47396
IPR009083
4-54 TFIIA_helical
Transcription factor IIA, helical

FELYRRSTIGMCLTETLDDMVQNGTLSPELAFQVLVQFDKSMTEALETKVK

superfamily: SSF50784
IPR009088
52-102 TFIIA_betabarrel
Transcription factor IIA, beta-barrel

KVKSKVSIKGHLHTYRFCDNVWTFILQDAMFKNEDTQENVGRVKIVACDSK

HMMPfam: PF02751
IPR015871
52-101 TFIIA_gamma_C
Transcription initiation factor IIA, gamma subunit

KVKSKVSIKGHLHTYRFCDNVWTFILQDAMFKNEDTQENVGRVKIVACDS

Gene3D: G3DSA:2.30.18.10
IPR009088
55-105 TFIIA_betabarrel
Transcription factor IIA, beta-barrel

SKVSIKGHLHTYRFCDNVWTFILQDAMFKNEDTQENVGRVKIVACDSKLLT






List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


Personal tools
Namespaces

Variants
Actions
PRGDB
META-SPECIES
Wiki
Toolbox