PRGDB00075171 (Pth.4619)
| Pth.4619 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 224081906 (XM_002306487) |
| Gene Class | Unknown |
| Domain Type | |
| Gene Species | Populus trichocarpa |
DNA Sequence
ATTCGTACCTTCCAAATCAATCGGTGAGTATAAAATCTCCCATCCTCAAAAACTAGGGTATAAAAGGGTTCAAATCCTCTCCGCCCAAAAAGCTCTTCCCTCGAATAAACGTTAAATTAAACCCACAACAAAGCATCAACTCCTCCAATCGATCTCTGGGAATGGCGACGTTTGAGCTGTATAGAAGATCGACGATCGGGATGTGCTTGACGGAGACTCTTGATGACATGGTTCAAAACGGTACTCTCAGTCCTGAGCTAGCCTTCCAGGTTCTTGTTCAGTTTGATAAGTCCATGACTGAAGCTTTGGAAACAAAAGTGAAGAGCAAAGTCTCAATTAAGGGACATCTGCATACCTACAGATTCTGCGACAATGTTTGGACCTTCATTTTACAGGATGCTATGTTTAAGAATGAGGACACGCAGGAGAATGTTGGGCGGGTTAAAATAGTGGCATGCGACTCAAAGCTGCTTACGCAATGAGGCTGTAGAGGTGGTTATTTGTAAAGGTGGGATGGCAGCAAGATGGGATGCGAGTGTTGTTTACTGTGGAAGACTGGACACAGCATGTGTAACCCATCAACAACCTTTTCCAAGTTCCAGCTTTTGTTATTTGATGATGTATTATTTTGACGACGGTGATTGTTCGTTTTATTTAATCTGCTAAGAAGATGGTATACTCATGGAATAGGGTAGCATCATCAAACTACAATTTCGTTGGTGGCTGTATTTGTTTACGTATTATTAATCGTTTCTCGTGCTCGGATGCAAGTGCTTGCATGAAGGCAACGGGTTAAAAGATTGGCACCTCTAAATTATAAAAAATTAGTTAATCAA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Pth.4619 | translated coding region predicted by ESTScan from UniGene Pth.4619 | MATFELYRRSTIGMCLTETLDDMVQNGTLSPELAFQVLVQFDKSMTEALETKVKSKVSIKGHLHTYRFCDNVWTFILQDAMFKNEDTQENVGRVKIVACDSKLLTQ |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| BlastProDom: PD009224 IPR015872
|
1-50 | TFIIA_gsu_N Transcription initiation factor IIA, gamma subunit
|
MATFELYRRSTIGMCLTETLDDMVQNGTLSPELAFQVLVQFDKSMTEALE |
| HMMPIR: PIRSF009415 IPR003194
|
1-106 | Hum_TFIIA_gamma Transcription initiation factor IIA, gamma subunit
|
MATFELYRRSTIGMCLTETLDDMVQNGTLSPELAFQVLVQFDKSMTEALETKVKSKVSIKGHLHTYRFCDNVWTFILQDAMFKNEDTQENVGRVKIVACDSKLLTQ |
| HMMPanther: PTHR10966 IPR003194
|
1-103 | TFIIA_gamma Transcription initiation factor IIA, gamma subunit
|
MATFELYRRSTIGMCLTETLDDMVQNGTLSPELAFQVLVQFDKSMTEALETKVKSKVSIKGHLHTYRFCDNVWTFILQDAMFKNEDTQENVGRVKIVACDSKL |
| Gene3D: G3DSA:1.10.287.190 IPR015872
|
2-54 | TFIIA_gsu_N Transcription initiation factor IIA, gamma subunit
|
ATFELYRRSTIGMCLTETLDDMVQNGTLSPELAFQVLVQFDKSMTEALETKVK |
| HMMPfam: PF02268 IPR015872
|
3-50 | TFIIA_gamma_N Transcription initiation factor IIA, gamma subunit
|
TFELYRRSTIGMCLTETLDDMVQNGTLSPELAFQVLVQFDKSMTEALE |
| superfamily: SSF47396 IPR009083
|
4-54 | TFIIA_helical Transcription factor IIA, helical
|
FELYRRSTIGMCLTETLDDMVQNGTLSPELAFQVLVQFDKSMTEALETKVK |
| superfamily: SSF50784 IPR009088
|
52-102 | TFIIA_betabarrel Transcription factor IIA, beta-barrel
|
KVKSKVSIKGHLHTYRFCDNVWTFILQDAMFKNEDTQENVGRVKIVACDSK |
| HMMPfam: PF02751 IPR015871
|
52-101 | TFIIA_gamma_C Transcription initiation factor IIA, gamma subunit
|
KVKSKVSIKGHLHTYRFCDNVWTFILQDAMFKNEDTQENVGRVKIVACDS |
| Gene3D: G3DSA:2.30.18.10 IPR009088
|
55-105 | TFIIA_betabarrel Transcription factor IIA, beta-barrel
|
SKVSIKGHLHTYRFCDNVWTFILQDAMFKNEDTQENVGRVKIVACDSKLLT |
List of Contributions
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