PRGDB00075173 (Pth.4966)
| Pth.4966 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 224065630 (XM_002301857) |
| Gene Class | Unknown |
| Domain Type | Ser-Thr Kinase |
| Gene Species | Populus trichocarpa |
DNA Sequence
GACTTTTGATAACTCTGAAAATTATCTCCTCGATAATATTAGGTTTCCTTGAATAGTTAATTTGGTTTCAGCTAGGTTGCTGGATTAATGGCGAAGAGAAGGCAGAGCAAGATATTATTGGATCGTGGAAGTGAGTTATTGGAGGAAAGGATCAGATTTTGTGATGGTAGATGTAGATCAAATCCTATCAGGAACTTCTCTGTTGATCAAATCTGCAGAGCCATACAAGACTTCCAAAAAATTCACCCCTTACAAAGCTGTATAGAATTTGAATGGAAAAAGGGAGTTCTAGATGGGCGTCTTGTTTTCATCAAGAGGTATGCAAGAGGCGGTCAAGAGGTCTACCGTGACATTGTGGTCTCGTCGCAGATGAGCAGTCACAACAATGTTCTCAAGCTATTAGGTTGTTGTTTGGAGATCCCAGAAGGCCCAGCTCTAGTTTATGAATATCCAGAGAATCGAAGTCTGGATAGACATATTCATTATGGATCATTACCTTGGGGAACCAGATTGAAAATTGCCAAGGAAATTGCAAATGCCGTGGCATATCTCCACACTGCATTTCCCAGGCCCATCATCCACAGAGACATAAAACCTGCAAATATCTTCCTCAACCAGAATTATGCTGCCAAGTTGTCCGATTTCTCTTTTTCCATATCAATTCCTGAAGGTGAATCGAAGGTTGGAGATGATCTTCTTGTTGGGACATTTGGTTTCTTGGACCCTGATTATACGATGACAAATTTTGTGACAGAGAAGACTGATGTCTTCAGCTTTGGGGTGCTGCTGCTCGTCCTTCTTACTGGACGAGCAACACGTCAAGGGGAAATCCATCTGATAGAGCATGTGAAACTCTTGGTTGAACAGGATCGGGTACATGAAGCTGTGGATCCTATGATTAGGGGAAACGGGGGAGAAGCAATTGATCAGCAACAACTGGAAGCATCCATTGAACTAGCCTTGAGATGCACCGATGATTCAGGAGAAGATAGGCCACTAATGATAGAAGTAGCAAAAGAAATCCAGCGAATTGAAAGATCCATCACTGCAGCTCCATAGCTACAAATGTTATCTGTATCACTAAAGTGCAAGAAACACTTCCACTTAATGCTTGCCAACAATGCAATGTAGCACTCAACAACTGATGCATTCGGTAGGATTTTAGTCATCTAGATTTCTTTTATATCATGTAGATGAATTCTAAGTTCCTAACTGTTATTTTACTATCTGTATGAACATGATCAGTCTCATGTGCTACCTA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Pth.4966 | translated coding region predicted by ESTScan from UniGene Pth.4966 | MAKRRQSKILLDRGSELLEERIRFCDGRCRSNPIRNFSVDQICRAIQDFQKIHPLQSCIEFEWKKGVLDGRLVFIKRYARGGQEVYRDIVVSSQMSSHNNVLKLLGCCLEIPEGPALVYEYPENRSLDRHIHYGSLPWGTRLKIAKEIANAVAYLHTAFPRPIIHRDIKPANIFLNQNYAAKLSDFSFSISIPEGESKVGDDLLVGTFGFLDPDYTMTNFVTEKTDVFSFGVLLLVLLTGRATRQGEIHLIEHVKLLVEQDRVHEAVDPMIRGNGGEAIDQQQLEASIELALRCTDDSGEDRPLMIEVAKEIQRIERSITAAPXATNVICITKVQETLPLNACQQCNVALNN |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| ProfileScan: PS50011 IPR000719
|
1-315 | PROTEIN_KINASE_DOM Protein kinase, catalytic domain
|
MAKRRQSKILLDRGSELLEERIRFCDGRCRSNPIRNFSVDQICRAIQDFQKIHPLQSCIEFEWKKGVLDGRLVFIKRYARGGQEVYRDIVVSSQMSSHNNVLKLLGCCLEIPEGPALVYEYPENRSLDRHIHYGSLPWGTRLKIAKEIANAVAYLHTAFPRPIIHRDIKPANIFLNQNYAAKLSDFSFSISIPEGESKVGDDLLVGTFGFLDPDYTMTNFVTEKTDVFSFGVLLLVLLTGRATRQGEIHLIEHVKLLVEQDRVHEAVDPMIRGNGGEAIDQQQLEASIELALRCTDDSGEDRPLMIEVAKEIQRI |
| HMMPanther: PTHR24420:SF729 | 11-319 | PROTEIN KINASE, PUTATIVE | LDRGSELLEERIRFCDGRCRSNPIRNFSVDQICRAIQDFQKIHPLQSCIEFEWKKGVLDGRLVFIKRYARGGQEVYRDIVVSSQMSSHNNVLKLLGCCLEIPEGPALVYEYPENRSLDRHIHYGSLPWGTRLKIAKEIANAVAYLHTAFPRPIIHRDIKPANIFLNQNYAAKLSDFSFSISIPEGESKVGDDLLVGTFGFLDPDYTMTNFVTEKTDVFSFGVLLLVLLTGRATRQGEIHLIEHVKLLVEQDRVHEAVDPMIRGNGGEAIDQQQLEASIELALRCTDDSGEDRPLMIEVAKEIQRIERSI |
| HMMPanther: PTHR24420 | 11-319 | FAMILY NOT NAMED,FAMILY NOT NAMED | LDRGSELLEERIRFCDGRCRSNPIRNFSVDQICRAIQDFQKIHPLQSCIEFEWKKGVLDGRLVFIKRYARGGQEVYRDIVVSSQMSSHNNVLKLLGCCLEIPEGPALVYEYPENRSLDRHIHYGSLPWGTRLKIAKEIANAVAYLHTAFPRPIIHRDIKPANIFLNQNYAAKLSDFSFSISIPEGESKVGDDLLVGTFGFLDPDYTMTNFVTEKTDVFSFGVLLLVLLTGRATRQGEIHLIEHVKLLVEQDRVHEAVDPMIRGNGGEAIDQQQLEASIELALRCTDDSGEDRPLMIEVAKEIQRIERSI |
| superfamily: SSF56112 IPR011009
|
19-320 | Protein kinase-like (PK-like) Protein kinase-like domain
|
EERIRFCDGRCRSNPIRNFSVDQICRAIQDFQKIHPLQSCIEFEWKKGVLDGRLVFIKRYARGGQEVYRDIVVSSQMSSHNNVLKLLGCCLEIPEGPALVYEYPENRSLDRHIHYGSLPWGTRLKIAKEIANAVAYLHTAFPRPIIHRDIKPANIFLNQNYAAKLSDFSFSISIPEGESKVGDDLLVGTFGFLDPDYTMTNFVTEKTDVFSFGVLLLVLLTGRATRQGEIHLIEHVKLLVEQDRVHEAVDPMIRGNGGEAIDQQQLEASIELALRCTDDSGEDRPLMIEVAKEIQRIERSIT |
| HMMSmart: SM00220 IPR002290
|
49-315 | Serine/Threonine protein kinases, catalytic Serine/threonine- / dual-specificity protein kinas
|
FQKIHPLQSCIEFEWKKGVLDGRLVFIKRYARGGQEVYRDIVVSSQMSSHNNVLKLLGCCLEIPEGPALVYEYPENRSLDRHIHYGSLPWGTRLKIAKEIANAVAYLHTAFPRPIIHRDIKPANIFLNQNYAAKLSDFSFSISIPEGESKVGDDLLVGTFGFLDPDYTMTNFVTEKTDVFSFGVLLLVLLTGRATRQGEIHLIEHVKLLVEQDRVHEAVDPMIRGNGGEAIDQQQLEASIELALRCTDDSGEDRPLMIEVAKEIQRI |
| HMMSmart: SM00219 IPR020635
|
49-312 | Tyrosine kinase, catalytic domain Tyrosine-protein kinase, catalytic domain
|
FQKIHPLQSCIEFEWKKGVLDGRLVFIKRYARGGQEVYRDIVVSSQMSSHNNVLKLLGCCLEIPEGPALVYEYPENRSLDRHIHYGSLPWGTRLKIAKEIANAVAYLHTAFPRPIIHRDIKPANIFLNQNYAAKLSDFSFSISIPEGESKVGDDLLVGTFGFLDPDYTMTNFVTEKTDVFSFGVLLLVLLTGRATRQGEIHLIEHVKLLVEQDRVHEAVDPMIRGNGGEAIDQQQLEASIELALRCTDDSGEDRPLMIEVAKEI |
| Gene3D: G3DSA:3.30.200.20 | 66-108 | no description | GVLDGRLVFIKRYARGGQEVYRDIVVSSQMSSHNNVLKLLGCC |
| HMMPfam: PF00069 IPR017442
|
86-255 | Pkinase,Ser-thr Serine/threonine-protein kinase-like domain
|
YRDIVVSSQMSSHNNVLKLLGCCLEIPEGPALVYEYPENRSLDRHIHYGSLPWGTRLKIAKEIANAVAYLHTAFPRPIIHRDIKPANIFLNQNYAAKLSDFSFSISIPEGESKVGDDLLVGTFGFLDPDYTMTNFVTEKTDVFSFGVLLLVLLTGRATRQGEIHLIEHVK |
| Gene3D: G3DSA:1.10.510.10 | 109-304 | no description | LEIPEGPALVYEYPENRSLDRHIHYGSLPWGTRLKIAKEIANAVAYLHTAFPRPIIHRDIKPANIFLNQNYAAKLSDFSFSISIPEGESKVGDDLLVGTFGFLDPDYTMTNFVTEKTDVFSFGVLLLVLLTGRATRQGEIHLIEHVKLLVEQDRVHEAVDPMIRGNGGEAIDQQQLEASIELALRCTDDSGEDRPL |
| PatternScan: PS00108 IPR008271
|
163-175 | PROTEIN_KINASE_ST Serine/threonine-protein kinase, active site
|
IIHRDIKPANIFL |
| Seg: seg | 232-238 | seg | VLLLVLL |
List of Contributions
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