PRGDB00075174 (Pth.5019)
| Pth.5019 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 224110473 (XM_002315494) |
| Gene Class | Unknown |
| Domain Type | Ser-Thr Kinase |
| Gene Species | Populus trichocarpa |
DNA Sequence
ATGAAGGAAGAACTAGAATTACCCTTCTTTAACATGGATGAGTTGGCTTCTGCAACAAATAACTTTTCCGATTCCAATAAACTAGGAGAAGGGGGTTTCGGACCTGTTTATAAGGGAACATTAACAGATGGACAAGAAATAGCTGTCAAGAGGCTCTCTAAGAATTCAAGACAAGGACTTGAGGAGTTCAAAAATGAAGTCCAACATATTGTGAAACTTCAGCACCGGAATCTAGTGAGGCTTCTTGGATGCTGTATTCAAAGTGATGAGACGATGCTGGTCTACGAGTTCTTGCCTAACAAAAGCTTGGACTTCTATATTTTTGATGAGACTCATAGCTTGCTACTAGATTGGCCTAAACGCTACAACATCATTAACGGGATTGCTCGAGGACTCCTTTATCTTCACCAAGATTCCAGACTAAGAATAATCCACAGAGATCTGAAAACCAGCAATATTTTGTTGGATTACGAAATGAATCCAAAAATCTCAGACTTTGGCCTGGCTAGAAGTTTTGGAGAAAATGAAACGGAAGCCAATACTAATAAAGTGGCTGGAACGTATGGTTACATATCTCCAGAGTACGCAAATTATGGACTCTACTCACTAAAATCAGACGTCTTCAGCTTTGGAGTATTGGTGCTAGAGATAGTGACTGGCTATAGGAACAGGGGATTCAGTCACCCAGATCACCACCTCAACCTTATCGGGCATGCTTGGATACTGTTCAAGCAAGGCAGGTCTCTGGAACTGGCTGCGGGATCAGGAGTTGAAACACCCTATTTGTCTGAAGTCCTACGTTCAATTCATGTGGGGCTGTTGTGTGTGCAAGAAAATACAGAAGATCGACCAAACATATCACATGTGGTTTTGATGTTGGGTAATGAAGATGAATTGCCTCAGCCTAAACAACCAGGATTTTTCACTGAAAGGGATCTTGATGAAGCAAGCTATTCATCGAGCCAGAACAAACCACCTTCGGCAAACGGATGCTCGATTTCAATGTTAGAGGCAAGATAGATTGCTTTTATTTCATTTCAAGTGATTAAAGGCGAATTAATATTCGATAGATGTTCTAGTTGCAGAACAGGAATTACGAACAAAAGCAAGTCAAATAAATGCTTCTAAAGCTTAGTGTCTCTATGAAACGTGAAGAAATTGATGACAAGTATCTTCATGTAATCCAAGAGTTGCAGCTACATTTATGAATCATGGGGAGGGGACTCCAGATATTTCTCTTACTTGATGTTCATGTATCATCAAGACTTGCCAGCTAGTATTTCATCTTATAGATTTGAACATTTCATTAGAACATTTGTATTTAAGTTTGTTTTTGAAACATAAATTACCATCAAGTTTGTGATAATATTTTAAGATTAATAAGTTCTCTTTTATAA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Pth.5019 | translated coding region predicted by ESTScan from UniGene Pth.5019 | MKEELELPFFNMDELASATNNFSDSNKLGEGGFGPVYKGTLTDGQEIAVKRLSKNSRQGLEEFKNEVQHIVKLQHRNLVRLLGCCIQSDETMLVYEFLPNKSLDFYIFDETHSLLLDWPKRYNIINGIARGLLYLHQDSRLRIIHRDLKTSNILLDYEMNPKISDFGLARSFGENETEANTNKVAGTYGYISPEYANYGLYSLKSDVFSFGVLVLEIVTGYRNRGFSHPDHHLNLIGHAWILFKQGRSLELAAGSGVETPYLSEVLRSIHVGLLCVQENTEDRPNISHVVLMLGNEDELPQPKQPGFFTERDLDEASYSSSQNKPPSANGCSISMLEAR |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| Gene3D: G3DSA:3.30.200.20 | 6-84 | G3DSA:3.30.200.20 | ELPFFNMDELASATNNFSDSNKLGEGGFGPVYKGTLTDGQEIAVKRLSKNSRQGLEEFKNEVQHIVKLQHRNLVRLLGC |
| HMMPanther: PTHR24420 | 6-334 | PTHR24420,FAMILY NOT NAMED | ELPFFNMDELASATNNFSDSNKLGEGGFGPVYKGTLTDGQEIAVKRLSKNSRQGLEEFKNEVQHIVKLQHRNLVRLLGCCIQSDETMLVYEFLPNKSLDFYIFDETHSLLLDWPKRYNIINGIARGLLYLHQDSRLRIIHRDLKTSNILLDYEMNPKISDFGLARSFGENETEANTNKVAGTYGYISPEYANYGLYSLKSDVFSFGVLVLEIVTGYRNRGFSHPDHHLNLIGHAWILFKQGRSLELAAGSGVETPYLSEVLRSIHVGLLCVQENTEDRPNISHVVLMLGNEDELPQPKQPGFFTERDLDEASYSSSQNKPPSANGCSIS |
| HMMPanther: PTHR24420:SF430 | 6-334 | PTHR24420:SF430,SUBFAMILY NOT NAMED | ELPFFNMDELASATNNFSDSNKLGEGGFGPVYKGTLTDGQEIAVKRLSKNSRQGLEEFKNEVQHIVKLQHRNLVRLLGCCIQSDETMLVYEFLPNKSLDFYIFDETHSLLLDWPKRYNIINGIARGLLYLHQDSRLRIIHRDLKTSNILLDYEMNPKISDFGLARSFGENETEANTNKVAGTYGYISPEYANYGLYSLKSDVFSFGVLVLEIVTGYRNRGFSHPDHHLNLIGHAWILFKQGRSLELAAGSGVETPYLSEVLRSIHVGLLCVQENTEDRPNISHVVLMLGNEDELPQPKQPGFFTERDLDEASYSSSQNKPPSANGCSIS |
| superfamily: SSF56112 IPR011009
|
8-293 | Kinase_like Protein kinase-like domain
|
PFFNMDELASATNNFSDSNKLGEGGFGPVYKGTLTDGQEIAVKRLSKNSRQGLEEFKNEVQHIVKLQHRNLVRLLGCCIQSDETMLVYEFLPNKSLDFYIFDETHSLLLDWPKRYNIINGIARGLLYLHQDSRLRIIHRDLKTSNILLDYEMNPKISDFGLARSFGENETEANTNKVAGTYGYISPEYANYGLYSLKSDVFSFGVLVLEIVTGYRNRGFSHPDHHLNLIGHAWILFKQGRSLELAAGSGVETPYLSEVLRSIHVGLLCVQENTEDRPNISHVVLML |
| ProfileScan: PS50011 IPR000719
|
22-307 | PROTEIN_KINASE_DOM Protein kinase, catalytic domain
|
FSDSNKLGEGGFGPVYKGTLTDGQEIAVKRLSKNSRQGLEEFKNEVQHIVKLQHRNLVRLLGCCIQSDETMLVYEFLPNKSLDFYIFDETHSLLLDWPKRYNIINGIARGLLYLHQDSRLRIIHRDLKTSNILLDYEMNPKISDFGLARSFGENETEANTNKVAGTYGYISPEYANYGLYSLKSDVFSFGVLVLEIVTGYRNRGFSHPDHHLNLIGHAWILFKQGRSLELAAGSGVETPYLSEVLRSIHVGLLCVQENTEDRPNISHVVLMLGNEDELPQPKQPGF |
| HMMPfam: PF07714 IPR001245
|
25-290 | Pkinase_Tyr Serine-threonine/tyrosine-protein kinase
|
SNKLGEGGFGPVYKGTLTDGQEIAVKRLSKNSRQGLEEFKNEVQHIVKLQHRNLVRLLGCCIQSDETMLVYEFLPNKSLDFYIFDETHSLLLDWPKRYNIINGIARGLLYLHQDSRLRIIHRDLKTSNILLDYEMNPKISDFGLARSFGENETEANTNKVAGTYGYISPEYANYGLYSLKSDVFSFGVLVLEIVTGYRNRGFSHPDHHLNLIGHAWILFKQGRSLELAAGSGVETPYLSEVLRSIHVGLLCVQENTEDRPNISHVV |
| Gene3D: G3DSA:1.10.510.10 | 85-290 | G3DSA:1.10.510.10 | CIQSDETMLVYEFLPNKSLDFYIFDETHSLLLDWPKRYNIINGIARGLLYLHQDSRLRIIHRDLKTSNILLDYEMNPKISDFGLARSFGENETEANTNKVAGTYGYISPEYANYGLYSLKSDVFSFGVLVLEIVTGYRNRGFSHPDHHLNLIGHAWILFKQGRSLELAAGSGVETPYLSEVLRSIHVGLLCVQENTEDRPNISHVV |
| PatternScan: PS00108 IPR008271
|
143-155 | PROTEIN_KINASE_ST Serine/threonine-protein kinase, active site
|
IIHRDLKTSNILL |
| HMMPfam: PF11883 IPR021820
|
297-339 | DUF3403 S-locus receptor kinase, C-terminal
|
DELPQPKQPGFFTERDLDEASYSSSQNKPPSANGCSISMLEAR |
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