PRGDB00075176 (Pth.5047)
| Pth.5047 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 224087372 (XM_002308105) |
| Gene Class | Unknown |
| Domain Type | LRR |
| Gene Species | Populus trichocarpa |
DNA Sequence
ACACTGTCCAGCGTATCTCATATGACTCCAACTCTCTCCTTCATGTGACTTGCTTCTCTTCATACAGGCAAGCATCAATGTCATCTCCTCCTCGCTTATTCTTGATTCTTTTCTTGCTTGTTTCCACTTCCTCTTTCCTCTTCCAGATCTCCTCTGCAGCCCATGAAGATGAAGATCATGATATAGACGTAGATCCAAACCTCAAGTTTGAGAACCCTAGGATCCGCAGAGCCTACATTGCCTTGCAGTCATGGAAACAAGCCATCTATTCAGACCCACTCAACTTCACGGCCAACTGGAAGGGCTCAGACGTGTGCTCTTACATGGGGATCTTTTGTGCTCCATCTCCCCAGAACAAGAAAGTAAGGGTGGTGGCTGGCATTGACCTCAACCATGCTGACATTGCTGGCTACCTCCCTACCGAGCTCGGCCTTCTTACCGATCTGGCACTCTTCCACATCAACTCCAACAGATTCTGTGGAGTGGTGCCCAATAGTTTCAGCAAAATGAAGCTTCTACATGAGCTGGACCTTAGCAATAATCGGTTTGTGGGCAAATTTCCGAAGGTTGTGCTCTCACTGCCTTCCCTCAAGTACTTGGATCTGCGCTTCAACGAGTTTGAAGGTTCTGTGCCCTCCCAGCTCTTTGACAAGCCTCTTGATGCTATCTTCTTGAACGACAACAGGTTCCAGTTTGGCATCCCAGAGAATCTTGGGAACTCTCCTGTTTCTGTTCTTGTCTTTGCGAACAACAACCTTGGTGGGTGCATTCCAGGCAGCATCGGAAAGATGGGCAAAACCCTGAACGAGATCATTCTCATGAACGACAATCTCACTGGATGCTTGCCTCCCCAGATCGGGATGCTCAAGGAAGTAACTGTTTTTGACGTGAGCTTCAATCATCTTCAAGGCTCTCTCCCTTCCAGCATTGGAAACATGAAGAGTGTTGAGCAACTTGACATTGCACACAACAGTTTCACAGGTGCTATACCTGCCAGTGTTTGCCAGTTGCCTAATTTGCAAAACTTCACCTTTTCTTTCAACTATTTCACTGGCGAAGCTCCTAGCTGTGCTGCTATCGGAGGCGTCTCCAATGGTACCCAGAATTGCATTCCTGGAAAGACAAATCAGAGATCAGCCAAGCAATGTTCTTCTGAAGCTGCACGCCCTGTTGACTGCAGCAAGTTCAAATGCGTATCGCCCAGAACACATCTTCCACCACCACCGCCTCCACCCCCATCTCCACCTCCACCTGTAGAACAACAGCCACCAACTTATCACCATATACCGCCACCACCATCTCCTCCTCCTCCACCCAGCCATTACCATTCAAATCATCCAGCACCGCCACCTATCGAAAAAGTCTCACCCGGTACTCATTACCATGTACCACCACCCCCGCCTTCCCATCAATACCAAGCACCACCGCCACCAAAGCAGTCAGCTGAAGTTCCAGCACCAAGTTACCACCCTAACTCTCCACCACCACCCCCGCCTTCCTGTCAGTACCAAGCACCACCGCCACCAAAGCAGTCAGCCGGGGTTCCAGCACCAAGTTACCACACTAACTCTCCGCCACCACCCCCTCCACCAACTAATGGATATACACATTCTCCTCCTCCAACCCAGCCTACAGCTCCAGTTCCATCACCA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Pth.5047 | translated coding region predicted by ESTScan from UniGene Pth.5047 | XTVQRISYDSNSLLHVTCFSSYRQASMSSPPRLFLILFLLVSTSSFLFQISSAAHEDEDHDIDVDPNLKFENPRIRRAYIALQSWKQAIYSDPLNFTANWKGSDVCSYMGIFCAPSPQNKKVRVVAGIDLNHADIAGYLPTELGLLTDLALFHINSNRFCGVVPNSFSKMKLLHELDLSNNRFVGKFPKVVLSLPSLKYLDLRFNEFEGSVPSQLFDKPLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNNLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKEVTVFDVSFNHLQGSLPSSIGNMKSVEQLDIAHNSFTGAIPASVCQLPNLQNFTFSFNYFTGEAPSCAAIGGVSNGTQNCIPGKTNQRSAKQCSSEAARPVDCSKFKCVSPRTHLPPPPPPPPSPPPPVEQQPPTYHHIPPPPSPPPPPSHYHSNHPAPPPIEKVSPGTHYHVPPPPPSHQYQAPPPPKQSAEVPAPSYHPNSPPPPPPSCQYQAPPPPKQSAGVPAPSYHTNSPPPPPPPTNGYTHSPPPTQPTAPVPSP |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR24420:SF665 | 11-498 | SUBFAMILY NOT NAMED | NSLLHVTCFSSYRQASMSSPPRLFLILFLLVSTSSFLFQISSAAHEDEDHDIDVDPNLKFENPRIRRAYIALQSWKQAIYSDPLNFTANWKGSDVCSYMGIFCAPSPQNKKVRVVAGIDLNHADIAGYLPTELGLLTDLALFHINSNRFCGVVPNSFSKMKLLHELDLSNNRFVGKFPKVVLSLPSLKYLDLRFNEFEGSVPSQLFDKPLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNNLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKEVTVFDVSFNHLQGSLPSSIGNMKSVEQLDIAHNSFTGAIPASVCQLPNLQNFTFSFNYFTGEAPSCAAIGGVSNGTQNCIPGKTNQRSAKQCSSEAARPVDCSKFKCVSPRTHLPPPPPPPPSPPPPVEQQPPTYHHIPPPPSPPPPPSHYHSNHPAPPPIEKVSPGTHYHVPPPPPSHQYQAPPPPKQSAEVPAPSYHPNSPPPPP |
| HMMPanther: PTHR24420 | 11-498 | FAMILY NOT NAMED,FAMILY NOT NAMED | NSLLHVTCFSSYRQASMSSPPRLFLILFLLVSTSSFLFQISSAAHEDEDHDIDVDPNLKFENPRIRRAYIALQSWKQAIYSDPLNFTANWKGSDVCSYMGIFCAPSPQNKKVRVVAGIDLNHADIAGYLPTELGLLTDLALFHINSNRFCGVVPNSFSKMKLLHELDLSNNRFVGKFPKVVLSLPSLKYLDLRFNEFEGSVPSQLFDKPLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNNLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKEVTVFDVSFNHLQGSLPSSIGNMKSVEQLDIAHNSFTGAIPASVCQLPNLQNFTFSFNYFTGEAPSCAAIGGVSNGTQNCIPGKTNQRSAKQCSSEAARPVDCSKFKCVSPRTHLPPPPPPPPSPPPPVEQQPPTYHHIPPPPSPPPPPSHYHSNHPAPPPIEKVSPGTHYHVPPPPPSHQYQAPPPPKQSAEVPAPSYHPNSPPPPP |
| Seg: seg | 28-48 | seg | SSPPRLFLILFLLVSTSSFLF |
| superfamily: SSF52058 | 72-356 | L domain-like,LRR | NPRIRRAYIALQSWKQAIYSDPLNFTANWKGSDVCSYMGIFCAPSPQNKKVRVVAGIDLNHADIAGYLPTELGLLTDLALFHINSNRFCGVVPNSFSKMKLLHELDLSNNRFVGKFPKVVLSLPSLKYLDLRFNEFEGSVPSQLFDKPLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNNLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKEVTVFDVSFNHLQGSLPSSIGNMKSVEQLDIAHNSFTGAIPASVCQLPNLQNFTFSFNYFTGEAPS |
| Gene3D: G3DSA:3.80.10.10 | 75-358 | no description | IRRAYIALQSWKQAIYSDPLNFTANWKGSDVCSYMGIFCAPSPQNKKVRVVAGIDLNHADIAGYLPTELGLLTDLALFHINSNRFCGVVPNSFSKMKLLHELDLSNNRFVGKFPKVVLSLPSLKYLDLRFNEFEGSVPSQLFDKPLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNNLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKEVTVFDVSFNHLQGSLPSSIGNMKSVEQLDIAHNSFTGAIPASVCQLPNLQNFTFSFNYFTGEAPSCA |
| HMMPfam: PF08263 IPR013210
|
81-113 | LRRNT_2 Leucine-rich repeat-containing N-terminal, type 2
|
ALQSWKQAIYSDPLNFTANWKGSDVCSYMGIFC |
| HMMPfam: PF13855 | 152-206 | LRR_8,Leucine rich repeat | FHINSNRFCGVVPNSFSKMKLLHELDLSNNRFVGKFPKVVLSLPSLKYLDLRFNE |
| FPrintScan: PR01217 | 399-411 | PRICHEXTENSN,Proline rich extensin signature | VSPRTHLPPPPPP |
| Seg: seg | 406-451 | seg | PPPPPPPPSPPPPVEQQPPTYHHIPPPPSPPPPPSHYHSNHPAPPP |
| FPrintScan: PR01217 | 412-433 | PRICHEXTENSN,Proline rich extensin signature | PPSPPPPVEQQPPTYHHIPPPP |
| FPrintScan: PR01217 | 433-449 | PRICHEXTENSN,Proline rich extensin signature | PSPPPPPSHYHSNHPAP |
| FPrintScan: PR01217 | 454-471 | PRICHEXTENSN,Proline rich extensin signature | KVSPGTHYHVPPPPPSHQ |
| Seg: seg | 464-478 | seg | PPPPPSHQYQAPPPP |
| Seg: seg | 485-509 | seg | PAPSYHPNSPPPPPPSCQYQAPPPP |
| Seg: seg | 516-551 | seg | PAPSYHTNSPPPPPPPTNGYTHSPPPTQPTAPVPSP |
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