PRGDB00075178 (Pth.5092)
| Pth.5092 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 224126988 (XM_002319943) |
| Gene Class | RLP |
| Domain Type | LRR, Ser-Thr Kinase |
| Gene Species | Populus trichocarpa |
DNA Sequence
ATGAAGTTCTTCCGGGCTTCAGTTATTCATTTATTCATCATCCTAACCATCATTTTTCCCTTTGCTATTTCTGACCTGAAGTCAGATAAGCAAGCTCTTCTTGACTTTGCTGCTGTTGTACCCCATTCAAGGAAGCTCAACTGGAACCCTGCTTCATTGGTCTGCAAGTCTTGGGTAGGTGTCACTTGCAATTCGAATGACACTCGTGTGGTTGAACTTCGACTCCCTGGAGTAGGACTTTTGGGTCATGTCCCACCAAACACCCTTGGTAAACTAGATGCCCTCAATACTCTCAGCCTCCGATCCAATGTCCTTGAAGGTGACCTTCCTTCTGATGTTACCTCTCTTCCATCACTCCAGAACCTCTTTCTCCAACATAATAACTTTTCTGGTGGTGTTCCAACCTCCTTTTCCTTGAAGCTCAATGTACTGGATCTCTCATTCAATTCTTTCACAGGCAACATTCCCCAAACAATAGCAAATTTAACACAACTTACCGGATTAAGCCTCCAAAATAACGCACTTTCTGGACCCATACCTGATCTCAACCACACTAGGATCAAGCATTTGAATTTAAGCTACAACCATCTTAATGGATCAATTCCAGTGTCTCTTCAAAAGTTCCCTAATTCATCCTTCATTGGAAACTCTCTCTTATGTGGACCACCTCTTAATCCTTGCTCCATAGTCCTTCCTCCTCCTCCATCCCCTGCTTACACCCCCCCACCAGCAACTTCACATAAGCGAAGCTCAAAATTGAAACTGACAATGGGAGCAATCATTGCCATTGCCGTGGGAGGGTCTGCTGTGCTGTTTCTTGTCGTTTTAATCGTCTTTTGCTGCTGTTTGAAGAAAAAAGATAATGAAGGCCCTGGTGTGTTGAAAGGGAAAGCAGTTAGCAGTGGTAGGGGTGAGAAGCCCAAAGAGGATTTTGGAAGTGGGGTGCAAGAATCTGAGAAAAACAAGCTGGTATTCTTTGAAGGCTGCTCTTACAATTTCGATCTCGAGGATTTATTAAGAGCTTCAGCTGAAGTTTTAGGAAAGGGTAGTTATGGTACAGCATATAAGGCTGTCTTGGAGGAATCAACCACAGTGGTGGTGAAAAGGTTGAAAGAAGTGGTGGTGGGAAAGAGAGACTTTGAGCAGCAGATGGAGATTGCGGGGAGAGTTGGGCAGCACCCAAATGTTGTGCCACTTCGTGCTTATTATTACTCAAAGGATGAGAGGCTTCTAGTGTATGACTATATCCCAGGTGGCAGCTTATCCACGCTTTTGCATGCAAACAGGGGAGCTGGCAGAACTCCACTAGATTGGGACTCTAGGGTTAAGATTGCCCTTGGTACTGCACGGGGAATTTCCCACCTTCATTCTGCTGGCGGTCCAAAGTTTACTCATGGAAATATCAAGTCGTCAAATGTCCTCCTCAGCCAAGATCATGATGGTTGCATCTCTGATTTTGGCCTGACACCTCTTATGAACGTCCCTGCTTCTTCATCTCGGAGTGCTGGTTATCGTGCTCCTGAGGTGATTGAAACCAGTAAGCACTCTCATAAATCAGATGTCTACAGCTTTGGTGTCATCCTTCTCGAGATGCTGACTGGGAAAGCTCCAATCCAATCACCAAGGCGTGATGACATGGTTGATCTCCCAAGATGGGTCCAATCAGTTGTAAGGGAGGAGTGGACAGCTGAGGTTTTCGATGTTGAACTGATGAGATACCAAAACATTGAAGAAGAAATGGTGCAGATGTTGCAAATTGGGATGACCTGTGTAGCAAAGGTGCCAGACATGCGACCTAACATGGAAGAAGTTGTTCGAATGATTGAAGAAATCCGGCAATCTGACTCAGAGAACCGGCCATCTTCTGAAGGGAACAAGTCCAAGGACTCAAATGTGCATACTCCATGATTGACGAAATTGTTGCTGCTTGATTTTAAGATCAAGATTCAAAAAGTGCTATGAGCACCTGCCTTGTAAGGTTTCTCGAGCATTTATTCAAGCTTATGTGTATGTGCAGTGCAGCATCATAGAGTGTGAATTTGTCTCAAttttttttcttcttttttCAGATATGTAGCAGTGCTTTGATTTTTAATTTTTAAGTCTGATTAGCTGGAAACCTCTTGATTTGTTGTAAAACTTCATTCAAAATTTGTGAATGAATTGATGAGACTTGAATCAAGAACACTCCATTTTTTTCTGC
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Pth.5092 | translated coding region predicted by ESTScan from UniGene Pth.5092 | MKFFRASVIHLFIILTIIFPFAISDLKSDKQALLDFAAVVPHSRKLNWNPASLVCKSWVGVTCNSNDTRVVELRLPGVGLLGHVPPNTLGKLDALNTLSLRSNVLEGDLPSDVTSLPSLQNLFLQHNNFSGGVPTSFSLKLNVLDLSFNSFTGNIPQTIANLTQLTGLSLQNNALSGPIPDLNHTRIKHLNLSYNHLNGSIPVSLQKFPNSSFIGNSLLCGPPLNPCSIVLPPPPSPAYTPPPATSHKRSSKLKLTMGAIIAIAVGGSAVLFLVVLIVFCCCLKKKDNEGPGVLKGKAVSSGRGEKPKEDFGSGVQESEKNKLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTAYKAVLEESTTVVVKRLKEVVVGKRDFEQQMEIAGRVGQHPNVVPLRAYYYSKDERLLVYDYIPGGSLSTLLHANRGAGRTPLDWDSRVKIALGTARGISHLHSAGGPKFTHGNIKSSNVLLSQDHDGCISDFGLTPLMNVPASSSRSAGYRAPEVIETSKHSHKSDVYSFGVILLEMLTGKAPIQSPRRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIGMTCVAKVPDMRPNMEEVVRMIEEIRQSDSENRPSSEGNKSKDSNVHTP |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR24420:SF779 | 8-635 | PTHR24420:SF779 | VIHLFIILTIIFPFAISDLKSDKQALLDFAAVVPHSRKLNWNPASLVCKSWVGVTCNSNDTRVVELRLPGVGLLGHVPPNTLGKLDALNTLSLRSNVLEGDLPSDVTSLPSLQNLFLQHNNFSGGVPTSFSLKLNVLDLSFNSFTGNIPQTIANLTQLTGLSLQNNALSGPIPDLNHTRIKHLNLSYNHLNGSIPVSLQKFPNSSFIGNSLLCGPPLNPCSIVLPPPPSPAYTPPPATSHKRSSKLKLTMGAIIAIAVGGSAVLFLVVLIVFCCCLKKKDNEGPGVLKGKAVSSGRGEKPKEDFGSGVQESEKNKLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTAYKAVLEESTTVVVKRLKEVVVGKRDFEQQMEIAGRVGQHPNVVPLRAYYYSKDERLLVYDYIPGGSLSTLLHANRGAGRTPLDWDSRVKIALGTARGISHLHSAGGPKFTHGNIKSSNVLLSQDHDGCISDFGLTPLMNVPASSSRSAGYRAPEVIETSKHSHKSDVYSFGVILLEMLTGKAPIQSPRRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIGMTCVAKVPDMRPNMEEVVRMIEEIRQSDSENRPSSEGNKSKDSNVHTP |
| HMMPanther: PTHR24420 | 8-635 | PTHR24420,FAMILY NOT NAMED | VIHLFIILTIIFPFAISDLKSDKQALLDFAAVVPHSRKLNWNPASLVCKSWVGVTCNSNDTRVVELRLPGVGLLGHVPPNTLGKLDALNTLSLRSNVLEGDLPSDVTSLPSLQNLFLQHNNFSGGVPTSFSLKLNVLDLSFNSFTGNIPQTIANLTQLTGLSLQNNALSGPIPDLNHTRIKHLNLSYNHLNGSIPVSLQKFPNSSFIGNSLLCGPPLNPCSIVLPPPPSPAYTPPPATSHKRSSKLKLTMGAIIAIAVGGSAVLFLVVLIVFCCCLKKKDNEGPGVLKGKAVSSGRGEKPKEDFGSGVQESEKNKLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTAYKAVLEESTTVVVKRLKEVVVGKRDFEQQMEIAGRVGQHPNVVPLRAYYYSKDERLLVYDYIPGGSLSTLLHANRGAGRTPLDWDSRVKIALGTARGISHLHSAGGPKFTHGNIKSSNVLLSQDHDGCISDFGLTPLMNVPASSSRSAGYRAPEVIETSKHSHKSDVYSFGVILLEMLTGKAPIQSPRRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIGMTCVAKVPDMRPNMEEVVRMIEEIRQSDSENRPSSEGNKSKDSNVHTP |
| superfamily: SSF52058 | 20-228 | SSF52058,LRR | PFAISDLKSDKQALLDFAAVVPHSRKLNWNPASLVCKSWVGVTCNSNDTRVVELRLPGVGLLGHVPPNTLGKLDALNTLSLRSNVLEGDLPSDVTSLPSLQNLFLQHNNFSGGVPTSFSLKLNVLDLSFNSFTGNIPQTIANLTQLTGLSLQNNALSGPIPDLNHTRIKHLNLSYNHLNGSIPVSLQKFPNSSFIGNSLLCGPPLNPCS |
| HMMPfam: PF08263 IPR013210
|
27-64 | LRRNT_2 Leucine-rich repeat-containing N-terminal, type 2
|
KSDKQALLDFAAVVPHSRKLNWNPASLVCKSWVGVTCN |
| Gene3D: G3DSA:3.80.10.10 | 40-213 | G3DSA:3.80.10.10 | VPHSRKLNWNPASLVCKSWVGVTCNSNDTRVVELRLPGVGLLGHVPPNTLGKLDALNTLSLRSNVLEGDLPSDVTSLPSLQNLFLQHNNFSGGVPTSFSLKLNVLDLSFNSFTGNIPQTIANLTQLTGLSLQNNALSGPIPDLNHTRIKHLNLSYNHLNGSIPVSLQKFPNSSF |
| HMMPfam: PF13855 | 72-129 | LRR_8,Leucine rich repeat | ELRLPGVGLLGHVPPNTLGKLDALNTLSLRSNVLEGDLPSDVTSLPSLQNLFLQHNNF |
| HMMPfam: PF00560 IPR001611
|
140-162 | LRR_1 Leucine-rich repeat
|
KLNVLDLSFNSFTGNIPQTIANL |
| HMMPfam: PF00560 IPR001611
|
187-207 | LRR_1 Leucine-rich repeat
|
IKHLNLSYNHLNGSIPVSLQK |
| Gene3D: G3DSA:3.30.200.20 | 271-415 | G3DSA:3.30.200.20 | LFLVVLIVFCCCLKKKDNEGPGVLKGKAVSSGRGEKPKEDFGSGVQESEKNKLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTAYKAVLEESTTVVVKRLKEVVVGKRDFEQQMEIAGRVGQHPNVVPLRAYYYSKDERLLVYDY |
| superfamily: SSF56112 IPR011009
|
308-616 | Kinase_like Protein kinase-like domain
|
KEDFGSGVQESEKNKLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTAYKAVLEESTTVVVKRLKEVVVGKRDFEQQMEIAGRVGQHPNVVPLRAYYYSKDERLLVYDYIPGGSLSTLLHANRGAGRTPLDWDSRVKIALGTARGISHLHSAGGPKFTHGNIKSSNVLLSQDHDGCISDFGLTPLMNVPASSSRSAGYRAPEVIETSKHSHKSDVYSFGVILLEMLTGKAPIQSPRRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIGMTCVAKVPDMRPNMEEVVRMIEEIRQSDS |
| ProfileScan: PS50011 IPR000719
|
340-635 | PROTEIN_KINASE_DOM Protein kinase, catalytic domain
|
RASAEVLGKGSYGTAYKAVLEESTTVVVKRLKEVVVGKRDFEQQMEIAGRVGQHPNVVPLRAYYYSKDERLLVYDYIPGGSLSTLLHANRGAGRTPLDWDSRVKIALGTARGISHLHSAGGPKFTHGNIKSSNVLLSQDHDGCISDFGLTPLMNVPASSSRSAGYRAPEVIETSKHSHKSDVYSFGVILLEMLTGKAPIQSPRRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIGMTCVAKVPDMRPNMEEVVRMIEEIRQSDSENRPSSEGNKSKDSNVHTP |
| HMMPfam: PF00069 IPR017442
|
344-620 | Pkinase,Ser-thr Serine/threonine-protein kinase-like domain
|
EVLGKGSYGTAYKAVLEESTTVVVKRLKEVVVGKRDFEQQMEIAGRVGQHPNVVPLRAYYYSKDERLLVYDYIPGGSLSTLLHANRGAGRTPLDWDSRVKIALGTARGISHLHSAGGPKFTHGNIKSSNVLLSQDHDGCISDFGLTPLMNVPASSSRSAGYRAPEVIETSKHSHKSDVYSFGVILLEMLTGKAPIQSPRRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIGMTCVAKVPDMRPNMEEVVRMIEEIRQSDSENRP |
| PatternScan: PS00107 IPR017441
|
346-377 | PROTEIN_KINASE_ATP Protein kinase, ATP binding site
|
LGKGSYGTAYKAVLEESTTVVVKRLKEVVVGK |
| Gene3D: G3DSA:1.10.510.10 | 416-629 | G3DSA:1.10.510.10 | IPGGSLSTLLHANRGAGRTPLDWDSRVKIALGTARGISHLHSAGGPKFTHGNIKSSNVLLSQDHDGCISDFGLTPLMNVPASSSRSAGYRAPEVIETSKHSHKSDVYSFGVILLEMLTGKAPIQSPRRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIGMTCVAKVPDMRPNMEEVVRMIEEIRQSDSENRPSSEGNKSKD |
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