PRGDB00075182 (Pth.5168)
| Pth.5168 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 224135632 (XM_002322086) |
| Gene Class | RLP |
| Domain Type | Ser-Thr Kinase, LRR |
| Gene Species | Populus trichocarpa |
DNA Sequence
ATGTTACCCGTATTTTTCACTTCGATCCTCATTCTTTCAATTCAACCCTCCCTTCCAAAAAATCTCTCACCCGACCATTCAGCCCTCCTCAGCCTCCGGTCTGCCGTGCACGGCCGGACACTCCTCTGGAACGTTTCGCTGCAGAGCCCTTGTTCATGGACTGGTGTCAAATGTGAACAAAATCGTGTCACGGTTCTCCGGCTTCCTGGTTTTGCACTCACTGGAGAAATCCCACTTGGAATCTTCTCAAACTTGACACAATTACGCACTTTGAGTCTTAGGCTTAATGCACTTACTGGAAACCTTCCTCAAGATCTTTCTAATTGTAAAAGTCTAAGGAATCTTTATTTACAAGGGAATCTTTTCTCTGGAGAGATTCCTGATTTCCTGTTTAGTTTGAAAGATCTTGTGAGGTTGAACCTTGCTGAGAATAATTTCACCGGTGAAATTTCACCCGGATTTGACAATTTCACGAGGCTGCGGACTTTGTTTTTGGAGGATAATTTGTTAACCGGGTCATTGCCAGATTTGAAGCTGGAGAAGCTAAAGCAGTTTAATGTAAGTAATAATTTGTTAAATGGGTCTATACCTGATACATTTAAAGGTTTTGGACCTAGTTCTTTTGGGGGTACTTCTTTATGTGGGAAGCCTCTTCCTGATTGTAAAGATAGCGGGGGGGCTATTGTGGTGCCTAGTACACCAAATGGTGGTGGACAAGGTAAGAGGAAGAAGTTGTCTGGAGGTGCAATTGCAGGTATTGTGATTGGGTCTATAGTGGGGTTACTGTTGATTGTTATGATTTTGATGTTTTTGTGTAGAAAGAACAGTAGTAATAAGTCAAGATCGATTGACATTGCATCGATTAAACAACAAGAGATGGAGATTCAAGGGGATAAGCCAATTGTCGAGGCGGAGAATGGTGGAGGGTATGGAAATGGGTATTCTGTGGCCGCCGCGGCGGCGGCTGCAATGGTGGGTAATGGTAAAGGTGGGGACTTGAATAGTGGTGGTGCCAAAAAGTTGGTGTTTTTCGGCAAGGCACCAAGGGTGTTTGATTTAGAAGATTTGTTGAGAGCCTCTGCAGAGGTTTTGGGGAAAGGTACGTTTGGGACGGCGTACAAGGCAGTTTTGGAGATGGGAACTGTGGTGGCTGTGAAGAGGTTGAGGGATGTGACAATTTCTGAGATAGAATTTAGGGAGAAGATCGAGACTGTGGGTGCTATGGATCATGAGAATTTGGTCCCATTGAGAGCTTACTATTATAGCAGAGATGAGAAGCTTCTTGTTTATGATTACATGTCAATGGGAAGCTTGTCTGCACTTTTGCATGGAAACAAGGGAGCTGGTAGGGCTCCATTGAACTGGGAAATCAGGTCTGGCATTGCCCTTGCAGCTGCCCGTGGCATTGAATACCTGCACTCTCAAGGTCCCAACGTATCCCACGGAAACATCAAGTCATCTAATATCCTTCTTACTCAATCATATGATGCCCGGGTATCTGATTTTGGGCTTGCCCACCTTGTTGGTCCTCCCTCTACTCCTAACCGAGTTGCTGGTTACCGAGCACCTGAGGTAACTGACCCTCGCAAGGTTTCCCAGAAGGCTGATGTATATAGCTTTGGTGTGTTGCTGTTGGAGCTGCTTACCGGGAAGGCCCCCGCCCATGCCCTTTTGAATGAGGAGGGCGTGGACCTTCCCAGATGGGTTCAGTCTATAGTTCGAGAGGAATGGACTTCAGAGGTGTTTGATCTTGAGCTCCTCAGATACCAGAATGTTGAGGAAGAGATGGTTCAGCTCTTGCAGCTTGGAATAGATTGTGCCGCCCAATACCCTGACAACCGCCCATCAATGTCCGCAGTAACAAGGAGGATCGAGGAGCTATGTCGGTCTAGCCTGCGGGAACATCACGGCCCACAGCCTGAACCAAGCAATGATGCAGATGATAACTCATCTCGATGAGCTGGCAACATCAAACCATGTATTGTAGAAGGATCTTCCTTGCTTTGTTTATGCCCATAATTATCATTTTTATTCTGGTGTTTGATTATATGTTTGATCGGGTCATCTTTCATTAGGAGCCAACTGTCATGTTCttttttttttATCTTGCCCCTCACCCCCATTGTACTAATTTTTCCTCCTTTTTTCCATAAATACTGAGGTGGATATCTGTTCTATTTCCTCTTGATGGGTGGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Pth.5168 | translated coding region predicted by ESTScan from UniGene Pth.5168 | XVTRIFHFDPHSFNSTLPSKKSLTRPFSPPQPPVCRARPDTPLERFAAEPLFMDGVKCEQNRVTVLRLPGFALTGEIPLGIFSNLTQLRTLSLRLNALTGNLPQDLSNCKSLRNLYLQGNLFSGEIPDFLFSLKDLVRLNLAENNFTGEISPGFDNFTRLRTLFLEDNLLTGSLPDLKLEKLKQFNVSNNLLNGSIPDTFKGFGPSSFGGTSLCGKPLPDCKDSGGAIVVPSTPNGGGQGKRKKLSGGAIAGIVIGSIVGLLLIVMILMFLCRKNSSNKSRSIDIASIKQQEMEIQGDKPIVEAENGGGYGNGYSVAAAAAAAMVGNGKGGDLNSGGAKKLVFFGKAPRVFDLEDLLRASAEVLGKGTFGTAYKAVLEMGTVVAVKRLRDVTISEIEFREKIETVGAMDHENLVPLRAYYYSRDEKLLVYDYMSMGSLSALLHGNKGAGRAPLNWEIRSGIALAAARGIEYLHSQGPNVSHGNIKSSNILLTQSYDARVSDFGLAHLVGPPSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPAHALLNEEGVDLPRWVQSIVREEWTSEVFDLELLRYQNVEEEMVQLLQLGIDCAAQYPDNRPSMSAVTRRIEELCRSSLREHHGPQPEPSNDADDNSSR |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| Gene3D: G3DSA:3.80.10.10 | 54-203 | no description | DGVKCEQNRVTVLRLPGFALTGEIPLGIFSNLTQLRTLSLRLNALTGNLPQDLSNCKSLRNLYLQGNLFSGEIPDFLFSLKDLVRLNLAENNFTGEISPGFDNFTRLRTLFLEDNLLTGSLPDLKLEKLKQFNVSNNLLNGSIPDTFKGF |
| HMMPanther: PTHR24420:SF537 | 55-627 | SUBFAMILY NOT NAMED | GVKCEQNRVTVLRLPGFALTGEIPLGIFSNLTQLRTLSLRLNALTGNLPQDLSNCKSLRNLYLQGNLFSGEIPDFLFSLKDLVRLNLAENNFTGEISPGFDNFTRLRTLFLEDNLLTGSLPDLKLEKLKQFNVSNNLLNGSIPDTFKGFGPSSFGGTSLCGKPLPDCKDSGGAIVVPSTPNGGGQGKRKKLSGGAIAGIVIGSIVGLLLIVMILMFLCRKNSSNKSRSIDIASIKQQEMEIQGDKPIVEAENGGGYGNGYSVAAAAAAAMVGNGKGGDLNSGGAKKLVFFGKAPRVFDLEDLLRASAEVLGKGTFGTAYKAVLEMGTVVAVKRLRDVTISEIEFREKIETVGAMDHENLVPLRAYYYSRDEKLLVYDYMSMGSLSALLHGNKGAGRAPLNWEIRSGIALAAARGIEYLHSQGPNVSHGNIKSSNILLTQSYDARVSDFGLAHLVGPPSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPAHALLNEEGVDLPRWVQSIVREEWTSEVFDLELLRYQNVEEEMVQLLQLGIDCAAQYPDNRPSMSAVTRRIEEL |
| HMMPanther: PTHR24420 | 55-627 | FAMILY NOT NAMED,FAMILY NOT NAMED | GVKCEQNRVTVLRLPGFALTGEIPLGIFSNLTQLRTLSLRLNALTGNLPQDLSNCKSLRNLYLQGNLFSGEIPDFLFSLKDLVRLNLAENNFTGEISPGFDNFTRLRTLFLEDNLLTGSLPDLKLEKLKQFNVSNNLLNGSIPDTFKGFGPSSFGGTSLCGKPLPDCKDSGGAIVVPSTPNGGGQGKRKKLSGGAIAGIVIGSIVGLLLIVMILMFLCRKNSSNKSRSIDIASIKQQEMEIQGDKPIVEAENGGGYGNGYSVAAAAAAAMVGNGKGGDLNSGGAKKLVFFGKAPRVFDLEDLLRASAEVLGKGTFGTAYKAVLEMGTVVAVKRLRDVTISEIEFREKIETVGAMDHENLVPLRAYYYSRDEKLLVYDYMSMGSLSALLHGNKGAGRAPLNWEIRSGIALAAARGIEYLHSQGPNVSHGNIKSSNILLTQSYDARVSDFGLAHLVGPPSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPAHALLNEEGVDLPRWVQSIVREEWTSEVFDLELLRYQNVEEEMVQLLQLGIDCAAQYPDNRPSMSAVTRRIEEL |
| superfamily: SSF52058 | 59-203 | L domain-like,LRR | EQNRVTVLRLPGFALTGEIPLGIFSNLTQLRTLSLRLNALTGNLPQDLSNCKSLRNLYLQGNLFSGEIPDFLFSLKDLVRLNLAENNFTGEISPGFDNFTRLRTLFLEDNLLTGSLPDLKLEKLKQFNVSNNLLNGSIPDTFKGF |
| HMMPfam: PF13855 | 64-121 | LRR_8,Leucine rich repeat | TVLRLPGFALTGEIPLGIFSNLTQLRTLSLRLNALTGNLPQDLSNCKSLRNLYLQGNL |
| Seg: seg | 245-269 | seg | LSGGAIAGIVIGSIVGLLLIVMILM |
| Seg: seg | 302-337 | seg | VEAENGGGYGNGYSVAAAAAAAMVGNGKGGDLNSGG |
| superfamily: SSF56112 IPR011009
|
335-647 | Protein kinase-like (PK-like) Protein kinase-like domain
|
SGGAKKLVFFGKAPRVFDLEDLLRASAEVLGKGTFGTAYKAVLEMGTVVAVKRLRDVTISEIEFREKIETVGAMDHENLVPLRAYYYSRDEKLLVYDYMSMGSLSALLHGNKGAGRAPLNWEIRSGIALAAARGIEYLHSQGPNVSHGNIKSSNILLTQSYDARVSDFGLAHLVGPPSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPAHALLNEEGVDLPRWVQSIVREEWTSEVFDLELLRYQNVEEEMVQLLQLGIDCAAQYPDNRPSMSAVTRRIEELCRSSLREHHGPQPEPSNDAD |
| ProfileScan: PS50011 IPR000719
|
358-627 | PROTEIN_KINASE_DOM Protein kinase, catalytic domain
|
RASAEVLGKGTFGTAYKAVLEMGTVVAVKRLRDVTISEIEFREKIETVGAMDHENLVPLRAYYYSRDEKLLVYDYMSMGSLSALLHGNKGAGRAPLNWEIRSGIALAAARGIEYLHSQGPNVSHGNIKSSNILLTQSYDARVSDFGLAHLVGPPSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPAHALLNEEGVDLPRWVQSIVREEWTSEVFDLELLRYQNVEEEMVQLLQLGIDCAAQYPDNRPSMSAVTRRIEEL |
| HMMSmart: SM00219 IPR020635
|
358-624 | Tyrosine kinase, catalytic domain Tyrosine-protein kinase, catalytic domain
|
RASAEVLGKGTFGTAYKAVLEMGTVVAVKRLRDVTISEIEFREKIETVGAMDHENLVPLRAYYYSRDEKLLVYDYMSMGSLSALLHGNKGAGRAPLNWEIRSGIALAAARGIEYLHSQGPNVSHGNIKSSNILLTQSYDARVSDFGLAHLVGPPSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPAHALLNEEGVDLPRWVQSIVREEWTSEVFDLELLRYQNVEEEMVQLLQLGIDCAAQYPDNRPSMSAVTRRI |
| HMMSmart: SM00220 IPR002290
|
358-628 | Serine/Threonine protein kinases, catalytic Serine/threonine- / dual-specificity protein kinas
|
RASAEVLGKGTFGTAYKAVLEMGTVVAVKRLRDVTISEIEFREKIETVGAMDHENLVPLRAYYYSRDEKLLVYDYMSMGSLSALLHGNKGAGRAPLNWEIRSGIALAAARGIEYLHSQGPNVSHGNIKSSNILLTQSYDARVSDFGLAHLVGPPSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPAHALLNEEGVDLPRWVQSIVREEWTSEVFDLELLRYQNVEEEMVQLLQLGIDCAAQYPDNRPSMSAVTRRIEELC |
| HMMPfam: PF00069 IPR017442
|
362-620 | Pkinase,Ser-thr Serine/threonine-protein kinase-like domain
|
EVLGKGTFGTAYKAVLEMGTVVAVKRLRDVTISEIEFREKIETVGAMDHENLVPLRAYYYSRDEKLLVYDYMSMGSLSALLHGNKGAGRAPLNWEIRSGIALAAARGIEYLHSQGPNVSHGNIKSSNILLTQSYDARVSDFGLAHLVGPPSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPAHALLNEEGVDLPRWVQSIVREEWTSEVFDLELLRYQNVEEEMVQLLQLGIDCAAQYPDNRPSMSAV |
| PatternScan: PS00107 IPR017441
|
364-386 | PROTEIN_KINASE_ATP Protein kinase, ATP binding site
|
LGKGTFGTAYKAVLEMGTVVAVK |
| Gene3D: G3DSA:3.30.200.20 | 364-420 | no description | LGKGTFGTAYKAVLEMGTVVAVKRLRDVTISEIEFREKIETVGAMDHENLVPLRAYY |
| Gene3D: G3DSA:1.10.510.10 | 421-620 | no description | YSRDEKLLVYDYMSMGSLSALLHGNKGAGRAPLNWEIRSGIALAAARGIEYLHSQGPNVSHGNIKSSNILLTQSYDARVSDFGLAHLVGPPSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPAHALLNEEGVDLPRWVQSIVREEWTSEVFDLELLRYQNVEEEMVQLLQLGIDCAAQYPDNRPSMSAV |
List of Contributions
There has not been any contribution yet.
