PRGDB00075185 (Pth.5292)
| Pth.5292 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 224082289 (XM_002335453) |
| Gene Class | Unknown |
| Domain Type | Ser-Thr Kinase |
| Gene Species | Populus trichocarpa |
DNA Sequence
CTGCAAGTGTTCAGTTTTGAAAGCATTAAAGCAGCTACAAATAACTTTTCAAGAGAAAACCAGCTTGGAGAGGGTGGGTTTGGCCCTGTTTATAAGGGTAAATTACCAAGAGGCCTGGAAATAGCAGTGAAGAGGCTGTCAGCATCATCAACTCAAGGACTTGAAGAGTTCAAGAACGAGGTTTCGCTTACGGCTAGACTTCAACATGTAAATCTAGTTAGGCTTCTGGGATTTTGCTCCGAGAGGGGAGAGAAGATGCTAATATACGAGTACATGCCAAATAAAAGCTTGGATCTCTACCTCTTTGATCCAATTAGAAGGTATAGCTTGGATTGGAGTAAGCGGGTTCGTATCATTGAAGGGGTTACTCAAGGGCTTCTATACCTCCAAGAGTACTCAAATTTTACAATAATTCATCGAGATTTGAAATCTAGCAACATTTTACTAGACGATGAAATGAATCCAAAGATATCAGATTTTGGCATGGCTAAACTTTTCAGGAAAGATGTGTATGAAGCAAACACAAGCAGAATTGTTGGAACTTACGGCTATATTCCTCCTGAATATGCGAGGAAAGGCATATATTCCATAAAGTATGATGTTTATAGCTTTGGAGTTGTCCTACTTCAAATGATAAGTGGAAAGACGAATACACGTTTTTACAGCGAAAACGAAGACTTGAACCTTTTAGAATATGCATATGACCTGTGGAAAAACGGGCGAGGAATGGAATTCATTGATCCATTTTTGGATGACTCATCCTCACCTTGTAAACTACTGACATGCATGCAAGTTGCTCTGCTGTGTGTCCAAGAAAATCCAGATGCTAGACCAACAATGCTAGAAGCTTTCTCAATGCTCAAAAATGATGATTCCCTGGCTATTGCTACTCCTGAAAGGCCAGGATTTTCAGAAAAAAAGAAAGGGGACATGGAAACTGCATCCTCATCCCAGCAAGTAATGTGTTCATTCAATGATTCGCAAGTTTCCCAATTGGAACCCCGT
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Pth.5292 | translated coding region predicted by ESTScan from UniGene Pth.5292 | LQVFSFESIKAATNNFSRENQLGEGGFGPVYKGKLPRGLEIAVKRLSASSTQGLEEFKNEVSLTARLQHVNLVRLLGFCSERGEKMLIYEYMPNKSLDLYLFDPIRRYSLDWSKRVRIIEGVTQGLLYLQEYSNFTIIHRDLKSSNILLDDEMNPKISDFGMAKLFRKDVYEANTSRIVGTYGYIPPEYARKGIYSIKYDVYSFGVVLLQMISGKTNTRFYSENEDLNLLEYAYDLWKNGRGMEFIDPFLDDSSSPCKLLTCMQVALLCVQENPDARPTMLEAFSMLKNDDSLAIATPERPGFSEKKKGDMETASSSQQVMCSFNDSQVSQLEPR |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR24420 | 1-321 | PTHR24420,FAMILY NOT NAMED | LQVFSFESIKAATNNFSRENQLGEGGFGPVYKGKLPRGLEIAVKRLSASSTQGLEEFKNEVSLTARLQHVNLVRLLGFCSERGEKMLIYEYMPNKSLDLYLFDPIRRYSLDWSKRVRIIEGVTQGLLYLQEYSNFTIIHRDLKSSNILLDDEMNPKISDFGMAKLFRKDVYEANTSRIVGTYGYIPPEYARKGIYSIKYDVYSFGVVLLQMISGKTNTRFYSENEDLNLLEYAYDLWKNGRGMEFIDPFLDDSSSPCKLLTCMQVALLCVQENPDARPTMLEAFSMLKNDDSLAIATPERPGFSEKKKGDMETASSSQQVM |
| HMMPanther: PTHR24420:SF430 | 1-321 | PTHR24420:SF430,SUBFAMILY NOT NAMED | LQVFSFESIKAATNNFSRENQLGEGGFGPVYKGKLPRGLEIAVKRLSASSTQGLEEFKNEVSLTARLQHVNLVRLLGFCSERGEKMLIYEYMPNKSLDLYLFDPIRRYSLDWSKRVRIIEGVTQGLLYLQEYSNFTIIHRDLKSSNILLDDEMNPKISDFGMAKLFRKDVYEANTSRIVGTYGYIPPEYARKGIYSIKYDVYSFGVVLLQMISGKTNTRFYSENEDLNLLEYAYDLWKNGRGMEFIDPFLDDSSSPCKLLTCMQVALLCVQENPDARPTMLEAFSMLKNDDSLAIATPERPGFSEKKKGDMETASSSQQVM |
| superfamily: SSF56112 IPR011009
|
1-287 | Kinase_like Protein kinase-like domain
|
LQVFSFESIKAATNNFSRENQLGEGGFGPVYKGKLPRGLEIAVKRLSASSTQGLEEFKNEVSLTARLQHVNLVRLLGFCSERGEKMLIYEYMPNKSLDLYLFDPIRRYSLDWSKRVRIIEGVTQGLLYLQEYSNFTIIHRDLKSSNILLDDEMNPKISDFGMAKLFRKDVYEANTSRIVGTYGYIPPEYARKGIYSIKYDVYSFGVVLLQMISGKTNTRFYSENEDLNLLEYAYDLWKNGRGMEFIDPFLDDSSSPCKLLTCMQVALLCVQENPDARPTMLEAFSML |
| Gene3D: G3DSA:3.30.200.20 | 2-78 | G3DSA:3.30.200.20 | QVFSFESIKAATNNFSRENQLGEGGFGPVYKGKLPRGLEIAVKRLSASSTQGLEEFKNEVSLTARLQHVNLVRLLGF |
| ProfileScan: PS50011 IPR000719
|
16-293 | PROTEIN_KINASE_DOM Protein kinase, catalytic domain
|
FSRENQLGEGGFGPVYKGKLPRGLEIAVKRLSASSTQGLEEFKNEVSLTARLQHVNLVRLLGFCSERGEKMLIYEYMPNKSLDLYLFDPIRRYSLDWSKRVRIIEGVTQGLLYLQEYSNFTIIHRDLKSSNILLDDEMNPKISDFGMAKLFRKDVYEANTSRIVGTYGYIPPEYARKGIYSIKYDVYSFGVVLLQMISGKTNTRFYSENEDLNLLEYAYDLWKNGRGMEFIDPFLDDSSSPCKLLTCMQVALLCVQENPDARPTMLEAFSMLKNDDSL |
| HMMPfam: PF00069 IPR017442
|
18-284 | Pkinase,Ser-thr Serine/threonine-protein kinase-like domain
|
RENQLGEGGFGPVYKGKLPRGLEIAVKRLSASSTQGLEEFKNEVSLTARLQHVNLVRLLGFCSERGEKMLIYEYMPNKSLDLYLFDPIRRYSLDWSKRVRIIEGVTQGLLYLQEYSNFTIIHRDLKSSNILLDDEMNPKISDFGMAKLFRKDVYEANTSRIVGTYGYIPPEYARKGIYSIKYDVYSFGVVLLQMISGKTNTRFYSENEDLNLLEYAYDLWKNGRGMEFIDPFLDDSSSPCKLLTCMQVALLCVQENPDARPTMLEAF |
| Gene3D: G3DSA:1.10.510.10 | 79-286 | G3DSA:1.10.510.10 | CSERGEKMLIYEYMPNKSLDLYLFDPIRRYSLDWSKRVRIIEGVTQGLLYLQEYSNFTIIHRDLKSSNILLDDEMNPKISDFGMAKLFRKDVYEANTSRIVGTYGYIPPEYARKGIYSIKYDVYSFGVVLLQMISGKTNTRFYSENEDLNLLEYAYDLWKNGRGMEFIDPFLDDSSSPCKLLTCMQVALLCVQENPDARPTMLEAFSM |
| PatternScan: PS00108 IPR008271
|
137-149 | PROTEIN_KINASE_ST Serine/threonine-protein kinase, active site
|
IIHRDLKSSNILL |
List of Contributions
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