PRGDB00075189 (Pth.5486)
| Pth.5486 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 224128763 (XM_002320380) |
| Gene Class | Unknown |
| Domain Type | Ser-Thr Kinase |
| Gene Species | Populus trichocarpa |
DNA Sequence
ATGGAAACAGAGAATGGTGAGTATGGAAGGCAAGAACGCATTGCTCTGGTGGCCATTGTGGTGGTGGCTTCACTGACAGTGGCTTCCCTGCTGGTTGCATTTAGTTATTATTGCTATATACGTAACAAGCTCTCCAAACGCCTTAAAAACCACAGTAGGGAAGGGTATGAGGACAAAGGTTGCTTTACAGATCTCGAAGTTGTTGCCGGGAAAGGCCTTAACGTGTTCACATTTAAGCAATTGCATTCAGCTACTGGTGGTTTCAGCAAGTCGAATGTGGTTGGGCATGGTGGGTTTGGATTAGTGTATCGTGGAGTCCTTAGCGATGGAAGGAAAGTTGCAATTAAGTTAATGGACCAAGCAGGGAAGCAGGGGGAAGATGAATTTAAAGTGGAGGTGGAATTGCTGAGCCACCTGCATTCTCCTTATCTGCTGGCATTGCTTGGGTATTGTTCAGGTGACAATCATAAAGTGCTGGTGTATGAGTTCATGCCAAATGGTGGTCTGCAAGAACATTTGCATCGTATCACTAGTTCCAATACTGTTTCCATAAGTTTGGACTGGGAAACACGTTTGAGAATTGCCCTCGAAGCTGCTAAGGGTTTGGAATATCTCCATGAGCATGTTAATCCTCCAGTGATTCATAGAGATTTTAAAAGCAGCAACATCCTCCTGGACAGAAATTTACACGCCAAAGTTTCTGATTTTGGATTGGCCAAGCTTGGACCTGACAAAGCTGGTGGACATGTTTCTACTAGAGTGCTGGGCACCCAGGGATATATCGCCCCTGAGTACGCATTAACTGGCCATTTGACAACAAAATCAGATGTCTACAGTTATGGGGTTGTTCTCTTGGAATTGCTTACTGGCAGAGTTCCAGTCGATATTAAGAGACCTGCTGGGGAAGGAGTTCTGGTATCTTGGGCACTGCCACGGTTGACAGATAGAGAGAAGGTTGTGGAAATTATGGATCCGGCATTGGAGGGCCAGTATTCAATGAAAGAGGTTATTCAGGTGGCAGCAATTGCTGCAATGTGTGTGCAACCAGAGGCAGATTACAGACCGTTGATGGCAGATGTTGTGCAGTCACTTGTACCACTGGTAAAAACGCAGCGGTCAACTTCAAAGGTAGGAAGCTGCTCGAAT
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Pth.5486 | translated coding region predicted by ESTScan from UniGene Pth.5486 | METENGEYGRQERIALVAIVVVASLTVASLLVAFSYYCYIRNKLSKRLKNHSREGYEDKGCFTDLEVVAGKGLNVFTFKQLHSATGGFSKSNVVGHGGFGLVYRGVLSDGRKVAIKLMDQAGKQGEDEFKVEVELLSHLHSPYLLALLGYCSGDNHKVLVYEFMPNGGLQEHLHRITSSNTVSISLDWETRLRIALEAAKGLEYLHEHVNPPVIHRDFKSSNILLDRNLHAKVSDFGLAKLGPDKAGGHVSTRVLGTQGYIAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDIKRPAGEGVLVSWALPRLTDREKVVEIMDPALEGQYSMKEVIQVAAIAAMCVQPEADYRPLMADVVQSLVPLVKTQRSTSKVGSCSN |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR24420 | 10-376 | PTHR24420,FAMILY NOT NAMED | RQERIALVAIVVVASLTVASLLVAFSYYCYIRNKLSKRLKNHSREGYEDKGCFTDLEVVAGKGLNVFTFKQLHSATGGFSKSNVVGHGGFGLVYRGVLSDGRKVAIKLMDQAGKQGEDEFKVEVELLSHLHSPYLLALLGYCSGDNHKVLVYEFMPNGGLQEHLHRITSSNTVSISLDWETRLRIALEAAKGLEYLHEHVNPPVIHRDFKSSNILLDRNLHAKVSDFGLAKLGPDKAGGHVSTRVLGTQGYIAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDIKRPAGEGVLVSWALPRLTDREKVVEIMDPALEGQYSMKEVIQVAAIAAMCVQPEADYRPLMADVVQSLVPLVKTQRSTSK |
| HMMPanther: PTHR24420:SF882 | 10-376 | PTHR24420:SF882 | RQERIALVAIVVVASLTVASLLVAFSYYCYIRNKLSKRLKNHSREGYEDKGCFTDLEVVAGKGLNVFTFKQLHSATGGFSKSNVVGHGGFGLVYRGVLSDGRKVAIKLMDQAGKQGEDEFKVEVELLSHLHSPYLLALLGYCSGDNHKVLVYEFMPNGGLQEHLHRITSSNTVSISLDWETRLRIALEAAKGLEYLHEHVNPPVIHRDFKSSNILLDRNLHAKVSDFGLAKLGPDKAGGHVSTRVLGTQGYIAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDIKRPAGEGVLVSWALPRLTDREKVVEIMDPALEGQYSMKEVIQVAAIAAMCVQPEADYRPLMADVVQSLVPLVKTQRSTSK |
| superfamily: SSF56112 IPR011009
|
58-364 | Kinase_like Protein kinase-like domain
|
DKGCFTDLEVVAGKGLNVFTFKQLHSATGGFSKSNVVGHGGFGLVYRGVLSDGRKVAIKLMDQAGKQGEDEFKVEVELLSHLHSPYLLALLGYCSGDNHKVLVYEFMPNGGLQEHLHRITSSNTVSISLDWETRLRIALEAAKGLEYLHEHVNPPVIHRDFKSSNILLDRNLHAKVSDFGLAKLGPDKAGGHVSTRVLGTQGYIAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDIKRPAGEGVLVSWALPRLTDREKVVEIMDPALEGQYSMKEVIQVAAIAAMCVQPEADYRPLMADVVQSL |
| Gene3D: G3DSA:3.30.200.20 | 71-149 | G3DSA:3.30.200.20 | KGLNVFTFKQLHSATGGFSKSNVVGHGGFGLVYRGVLSDGRKVAIKLMDQAGKQGEDEFKVEVELLSHLHSPYLLALLG |
| ProfileScan: PS50011 IPR000719
|
88-368 | PROTEIN_KINASE_DOM Protein kinase, catalytic domain
|
FSKSNVVGHGGFGLVYRGVLSDGRKVAIKLMDQAGKQGEDEFKVEVELLSHLHSPYLLALLGYCSGDNHKVLVYEFMPNGGLQEHLHRITSSNTVSISLDWETRLRIALEAAKGLEYLHEHVNPPVIHRDFKSSNILLDRNLHAKVSDFGLAKLGPDKAGGHVSTRVLGTQGYIAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDIKRPAGEGVLVSWALPRLTDREKVVEIMDPALEGQYSMKEVIQVAAIAAMCVQPEADYRPLMADVVQSLVPLV |
| HMMPfam: PF00069 IPR017442
|
90-362 | Pkinase,Ser-thr Serine/threonine-protein kinase-like domain
|
KSNVVGHGGFGLVYRGVLSDGRKVAIKLMDQAGKQGEDEFKVEVELLSHLHSPYLLALLGYCSGDNHKVLVYEFMPNGGLQEHLHRITSSNTVSISLDWETRLRIALEAAKGLEYLHEHVNPPVIHRDFKSSNILLDRNLHAKVSDFGLAKLGPDKAGGHVSTRVLGTQGYIAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDIKRPAGEGVLVSWALPRLTDREKVVEIMDPALEGQYSMKEVIQVAAIAAMCVQPEADYRPLMADVVQ |
| PatternScan: PS00107 IPR017441
|
94-116 | PROTEIN_KINASE_ATP Protein kinase, ATP binding site
|
VGHGGFGLVYRGVLSDGRKVAIK |
| Gene3D: G3DSA:1.10.510.10 | 150-364 | G3DSA:1.10.510.10 | YCSGDNHKVLVYEFMPNGGLQEHLHRITSSNTVSISLDWETRLRIALEAAKGLEYLHEHVNPPVIHRDFKSSNILLDRNLHAKVSDFGLAKLGPDKAGGHVSTRVLGTQGYIAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDIKRPAGEGVLVSWALPRLTDREKVVEIMDPALEGQYSMKEVIQVAAIAAMCVQPEADYRPLMADVVQSL |
| PatternScan: PS00108 IPR008271
|
213-225 | PROTEIN_KINASE_ST Serine/threonine-protein kinase, active site
|
VIHRDFKSSNILL |
List of Contributions
There has not been any contribution yet.
