PRGDB00075611 (Pul.2237)

Pul.2237
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	148605447 (EL782468)
Gene Class	Unknown
Domain Type
Gene Species	Pythium ultimum
	Comment?

PUND257TV Pythium ultimum ESTs Pythium ultimum DAOM BR144 cDNA clone PUND257, mRNA sequence

DNA Sequence

CACGTCGACACGTCCACTGGTGTGCTCGCGCACGTGAAGGACTTTGCGGCTGCGATCCGCAAGCAACAACCAGATGCCATTGTTGTTGTCGATGGTGTGTGCGCGTTGGGTGGCGAGGAGTGCCGCATGAAGCAGTGGGACTTGGATGTTGTTCTTACTGGTTCGCAGAAGTGCGTCGGTGTTCCAGCCGGTCTGAGTCTTATGGTGATTCGTCCTCGTGCTCTTCAAGCGTTTGAGAAGTGCACCTCGACCACCAAGTACTACGTCGACTGGCGCAACTGGTTGCCAATCATGAAGAACTATGAAGCGCGTCAACCAAGCTACTTTGCGACTCCTGCGGTCAACCACTTGTTTGCTCTCAACAAGGGTTTGGACATCTTGTTGGAGAATGGTGGCATCGAGCAACGTTTCGTGGAACACAAACTTGTCGGTGATGCGATTAAGGAAGCGATGAAGGCTTTGGGTTGCTCGTTTGTCACTGTGGAAGGCAGTGGTGCGCATACGTTGACTTGTGTTCGATACCCTGCTGGCGTTGGCGCTACCGATTTCTTGCCAAAGGTGGTGAAGCGTGGTGTGTCGCTTGCTGGTGGACTGCACAAGAAGATCAAGACTGAATACTTCCGCATTGGTCACATGGGACCTAGCACCCGTCGCTTGGATCACGTTTTGAAGACTGTGCAAGCGATTGAAGAGGCTTTCATCGAATGTGGCCACAACGTTCCTGAAAAGGGCAAGGCTGCCAAGATCATCAAGAAGCTGCAATCCCAGATCCCAATCAAGCCAGCTTGCTCGTACACGATGGCGTACCATGGATGCCCAGTCCCACCAAAGTGCCAAGTGTGGACATCGGAACGCTCGTGGCTGCGTTCGCCGCTGGTTTCTTGATCTCTACCTTG

Protein sequences

Name	Description	Sequence
Pul.2237	translated coding region predicted by ESTScan from UniGene Pul.2237	HVDTSTGVLAHVKDFAAAIRKQQPDAIVVVDGVCALGGEECRMKQWDLDVVLTGSQKCVGVPAGLSLMVIRPRALQAFEKCTSTTKYYVDWRNWLPIMKNYEARQPSYFATPAVNHLFALNKGLDILLENGGIEQRFVEHKLVGDAIKEAMKALGCSFVTVEGSGAHTLTCVRYPAGVGATDFLPKVVKRGVSLAGGLHKKIKTEYFRIGHMGPSTRRLDHVLKTVQAIEEAFIECGHNVPEKGKAAKIIKKLQSQIPIKPACSYTMAYHGCPSPTKVPSVDIGTLVAAFAAGFLISTL

Domains

Domain	Start-End	Description	Sequence
superfamily: SSF53383 IPR015424	1-237	PLP-dependent transferases Pyridoxal phosphate-dependent transferase, major d	HVDTSTGVLAHVKDFAAAIRKQQPDAIVVVDGVCALGGEECRMKQWDLDVVLTGSQKCVGVPAGLSLMVIRPRALQAFEKCTSTTKYYVDWRNWLPIMKNYEARQPSYFATPAVNHLFALNKGLDILLENGGIEQRFVEHKLVGDAIKEAMKALGCSFVTVEGSGAHTLTCVRYPAGVGATDFLPKVVKRGVSLAGGLHKKIKTEYFRIGHMGPSTRRLDHVLKTVQAIEEAFIECG
Gene3D: G3DSA:3.40.640.10 IPR015421	1-118	no description Pyridoxal phosphate-dependent transferase, major r	HVDTSTGVLAHVKDFAAAIRKQQPDAIVVVDGVCALGGEECRMKQWDLDVVLTGSQKCVGVPAGLSLMVIRPRALQAFEKCTSTTKYYVDWRNWLPIMKNYEARQPSYFATPAVNHLF
HMMPanther: PTHR21152:SF7	1-267	SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED	HVDTSTGVLAHVKDFAAAIRKQQPDAIVVVDGVCALGGEECRMKQWDLDVVLTGSQKCVGVPAGLSLMVIRPRALQAFEKCTSTTKYYVDWRNWLPIMKNYEARQPSYFATPAVNHLFALNKGLDILLENGGIEQRFVEHKLVGDAIKEAMKALGCSFVTVEGSGAHTLTCVRYPAGVGATDFLPKVVKRGVSLAGGLHKKIKTEYFRIGHMGPSTRRLDHVLKTVQAIEEAFIECGHNVPEKGKAAKIIKKLQSQIPIKPACSYTM
HMMPanther: PTHR21152	1-267	FAMILY NOT NAMED,AMINOTRANSFERASE CLASS V	HVDTSTGVLAHVKDFAAAIRKQQPDAIVVVDGVCALGGEECRMKQWDLDVVLTGSQKCVGVPAGLSLMVIRPRALQAFEKCTSTTKYYVDWRNWLPIMKNYEARQPSYFATPAVNHLFALNKGLDILLENGGIEQRFVEHKLVGDAIKEAMKALGCSFVTVEGSGAHTLTCVRYPAGVGATDFLPKVVKRGVSLAGGLHKKIKTEYFRIGHMGPSTRRLDHVLKTVQAIEEAFIECGHNVPEKGKAAKIIKKLQSQIPIKPACSYTM
HMMPfam: PF00266 IPR000192	1-199	Aminotran_5 Aminotransferase, class V/Cysteine desulfurase	HVDTSTGVLAHVKDFAAAIRKQQPDAIVVVDGVCALGGEECRMKQWDLDVVLTGSQKCVGVPAGLSLMVIRPRALQAFEKCTSTTKYYVDWRNWLPIMKNYEARQPSYFATPAVNHLFALNKGLDILLENGGIEQRFVEHKLVGDAIKEAMKALGCSFVTVEGSGAHTLTCVRYPAGVGATDFLPKVVKRGVSLAGGLH
PatternScan: PS00595 IPR020578	48-68	AA_TRANSFER_CLASS_5 Aminotransferase class-V pyridoxal-phosphate bindi	LDVVLTGSQKCVGVPAGLSLM
Gene3D: G3DSA:3.90.1150.10 IPR015422	119-242	no description Pyridoxal phosphate-dependent transferase, major r	ALNKGLDILLENGGIEQRFVEHKLVGDAIKEAMKALGCSFVTVEGSGAHTLTCVRYPAGVGATDFLPKVVKRGVSLAGGLHKKIKTEYFRIGHMGPSTRRLDHVLKTVQAIEEAFIECGHNVPE

List of Contributions

There has not been any contribution yet.

Add a Contribution

Analyses

Blast

Blast matches against Reference R-Genes. Show