PRGDB00076590 (Sbi.13495)
| Sbi.13495 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 242071044 (XM_002450754) |
| Gene Class | Unknown |
| Domain Type | LRR |
| Gene Species | Sorghum bicolor |
DNA Sequence
ATCTGTGTGGCAAACAGTTCTGAAGTTTGCAGCAATGGCGCCCCAGTTTGCAGCAGCAGGATTCCTCACCGGCCTTCTTGCTCTTGCAACATTTGCAAGCTGCAACACTGAAGGTGACATACTGTACAAGCAAAGGTTGGCATGGGAGGACCCAAACAACGTGCTGCAGAGCTGGAATTCGACGCTTGCCAATCCCTGCACCTGGTTCCATGTCACCTGCAACAACAATAACTCTGTCATCCGCGTGGATTTGGGCAATGCAGGCATCTCCGGTCCTCTGCTTCCAGATCTTGCAGAAATTCAGAACCTCCAGTACATCGAGCTGTATGGCAACGGCCTGAACGGTTCGATTCCAGAAACACTAGGCAACCTGACTAATCTCATCAGCTTGGATCTCTGGGACAACCTTCTTACCGGCGAAATCCCAACTACGCTTGGTTATGTCAGCACGCTGCGATATCTGAGGTTGTACCAAAACAACCTGACAGGGCCTATACCATCATCGTTTGGCAACCTGACTAGCCTTCTGGAATTGAAGCTTCAAGAGAATTCGTTGAGCGGCGCTATTCCGGCCTCCCTTGGCAACATCAAAGCATTACAATTCTTGAGATTAAACGATAATATGCTGACTGGCACGGTTCCATCGGAAGTCCTCTCCCTTGTCATTTCTGGCAACCTGACTGAGCTAAATATTGCTAGAAACAACCTGGATGGCACTGAGACATCGTCTGGACTGAGAGTGACTGCGATTATCCAGGATGCGCTGAAGACTGCATGATGGCTTGATGAGTCCTAGGATCAAGGCTTTGTTTTAATTTGCTTTATGCAATCGCTGGAAATAAATGAATAATTCCAATGGGGTGCATTGGTCTAGACATCTTGCAGTAGAATATGTTTGTCGAGTTTAGCTCAATTTGTATGGAAATAATGGATAATGTGAGTTAGACATCTATTTCTCTATaaaaaaactaaaaTGGTTTTTGTCCTG
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Sbi.13495 | translated coding region predicted by ESTScan from UniGene Sbi.13495 | MAPQFAAAGFLTGLLALATFASCNTEGDILYKQRLAWEDPNNVLQSWNSTLANPCTWFHVTCNNNNSVIRVDLGNAGISGPLLPDLAEIQNLQYIELYGNGLNGSIPETLGNLTNLISLDLWDNLLTGEIPTTLGYVSTLRYLRLYQNNLTGPIPSSFGNLTSLLELKLQENSLSGAIPASLGNIKALQFLRLNDNMLTGTVPSEVLSLVISGNLTELNIARNNLDGTETSSGLRVTAIIQDALKTA |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52058 | 20-228 | SSF52058,LRR | FASCNTEGDILYKQRLAWEDPNNVLQSWNSTLANPCTWFHVTCNNNNSVIRVDLGNAGISGPLLPDLAEIQNLQYIELYGNGLNGSIPETLGNLTNLISLDLWDNLLTGEIPTTLGYVSTLRYLRLYQNNLTGPIPSSFGNLTSLLELKLQENSLSGAIPASLGNIKALQFLRLNDNMLTGTVPSEVLSLVISGNLTELNIARNNLDGT |
| HMMPanther: PTHR24420:SF610 | 24-240 | PTHR24420:SF610 | NTEGDILYKQRLAWEDPNNVLQSWNSTLANPCTWFHVTCNNNNSVIRVDLGNAGISGPLLPDLAEIQNLQYIELYGNGLNGSIPETLGNLTNLISLDLWDNLLTGEIPTTLGYVSTLRYLRLYQNNLTGPIPSSFGNLTSLLELKLQENSLSGAIPASLGNIKALQFLRLNDNMLTGTVPSEVLSLVISGNLTELNIARNNLDGTETSSGLRVTAII |
| HMMPanther: PTHR24420 | 24-240 | PTHR24420,FAMILY NOT NAMED | NTEGDILYKQRLAWEDPNNVLQSWNSTLANPCTWFHVTCNNNNSVIRVDLGNAGISGPLLPDLAEIQNLQYIELYGNGLNGSIPETLGNLTNLISLDLWDNLLTGEIPTTLGYVSTLRYLRLYQNNLTGPIPSSFGNLTSLLELKLQENSLSGAIPASLGNIKALQFLRLNDNMLTGTVPSEVLSLVISGNLTELNIARNNLDGTETSSGLRVTAII |
| HMMPfam: PF08263 IPR013210
|
24-63 | LRRNT_2 Leucine-rich repeat-containing N-terminal, type 2
|
NTEGDILYKQRLAWEDPNNVLQSWNSTLANPCTWFHVTCN |
| Gene3D: G3DSA:3.80.10.10 | 26-229 | G3DSA:3.80.10.10 | EGDILYKQRLAWEDPNNVLQSWNSTLANPCTWFHVTCNNNNSVIRVDLGNAGISGPLLPDLAEIQNLQYIELYGNGLNGSIPETLGNLTNLISLDLWDNLLTGEIPTTLGYVSTLRYLRLYQNNLTGPIPSSFGNLTSLLELKLQENSLSGAIPASLGNIKALQFLRLNDNMLTGTVPSEVLSLVISGNLTELNIARNNLDGTE |
| HMMPfam: PF00560 IPR001611
|
91-113 | LRR_1 Leucine-rich repeat
|
NLQYIELYGNGLNGSIPETLGNL |
| HMMPfam: PF13855 | 139-198 | LRR_8,Leucine rich repeat | TLRYLRLYQNNLTGPIPSSFGNLTSLLELKLQENSLSGAIPASLGNIKALQFLRLNDNML |
| HMMPfam: PF13516 | 214-227 | LRR_6,Leucine Rich repeat | NLTELNIARNNLDG |
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