PRGDB00077593 (Ta.22337)

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Ta.22337
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 241987607 (AK334864)
Gene Class N
Domain Type NBS
Gene Species Triticum aestivum

Comment?

Triticum aestivum cDNA, clone: WT011_F05, cultivar: Chinese Spring

DNA Sequence

GGTCCCTCCCACTGCGCACCGCTGCCATTGCCAGCCTAGCCAGCAGCCTTCCACGACCTTCTTACCTAGATCCGCCGCCGCGCCGAGCCACGCAACGTGCCGGAGAAGATCGACCGAACCGCGCTCGCGCTTGACCTTTGCTGATCGGCGATGGAGATGCAGCTCGCGGCCGTGCTCGCCACGCTCACCCTCGGCGGCGCGCTCGTCGTGCTCTTCTTCGGCAAGTGGTGGCAGCCGCTGGCTGACGGCGACAAGCGCGTCAAGGAGCTCGACGACGCCGTCGAGGCCCTGCTGCAGCTGCGGGCCGACGTGCTCAAGCAGCTGGACGGCGCGCCGGAGCCGGAGCAGCCGCGCGCGTGAATGCGGCGCGTGCAGGACGCGCAGGACGAGGTGGCGTCCGTCAAGGCGCGGCACGACGCGGGGCAGCTCTACGTCGTCCGCCTCCTGCAGTACTTCCTCACCACGGGCCCCGTCGCCGGGCTGGCCGAGAAGCAGCTCAAGATCGTGCGCGCCATCCAGGAGCAGGGCGTGGCGCTGCTCGAGGCCGCGCTGGCCGCGCCGCAGGTGCCGCCGCCGCTCCTCCTCCAGCCCGAGGAGCTGGAGCTCCCGCCCGAGACGGGGTCCGCCAGGCCCTACCTCAACGAGGCGCTCGGCTTCCTCGGCGACTGCGACGCCGCGCTCGGCGTCTGGGGCGCCGGCGGCGTGGGCAAGACGACGGTGCTGAAGCGGGTGCGCGACGTGTGCGGCCGCGTGGCGCCATTCTTCGACCACGTCCTCCTCCTGGCGGCCTCCAGGGACTGCACGGTGGCGAAACTCCAGAAGGAGGTCGTGGCCGTGCTCGGCCTCCGCGACGCGCCGACCGAGCAGGCGCAGGCCGCCGGGATCCTGAGCTTCCTCAGGGACAAGAGCTTCCTGCTCCTGCTGGACGGCGTGTGGGAGCGCCTGGACCTGGAGAGGGTGGGCATCCCGCAGCCCTTGGGGGTGGTGGCCGGTCGGGTGAGGAAGGTGGTCGTGGCGTCCAGGAGCGAGGCGGTGTGCGCGGACATGGGCTGCCGCAAGAAGATCAAGATGGAGTGCATGAGCGAAGACGATGCGTGGAGCCTGTTTGAAGCGAACGCCGGCGAGGAGGCCATCCGCGGCGACGCCCAAATTTCCACACTTGCAAGACAGGTGGCTGCAGAATGCAATGGCCTGCCTCTCTTCCTCGCCACCGTCGGCCGTGCCATGTCCAACAAACGTACAGCAGAGGAGTGGGGCGATGCATTCGACAAGCTCAAGAAGCCGCAGCTCACGAGCACTGCGCCCGGCCAGGACAAGGGTGCGCACGCTCTCGTGAAGTTCTGCTTCGACAGCCTTGAGAGCGACACGGTGAGGGAGTGCCTCCTGACCTGCGCGCTCTGGCCGGAGGACCACAACATCTCCAAGGACGAGCTCGTGCAGTGCTGGATCGGCCTCGGCCTCCTCCCCAAGTACGACGACGTCGACGAGTCGCTCCGGTTCGGGCACACGGTGGTCGCCATCCTGGAGTCGGCGCGCCTCCTGGAGCAGGGCGACAACCACCGGCACAACATGTGCCCGTCCGACACGCACGTCCGGCTCCACGACGTCGTCCGCGACGCTGCGCTCCAGCTCGCGCCCGGCAAGTGGCTGGTCCGCGCGGGCGTCGGGCTCCGGGAGCCGCCCCGCGACGAGGCGCTGTGGCGCGACGTGGAGCTCGTGTCGCTGATGCACAACGCCATCGAGGAGGCCCCCGCCAAGGCCGGCGGCGCGCTCTCGGACGCGCAGCCGGCGTCGCTGATGCTGCAGTGCAACCGCGCCCTGCCGCGGAGGATGCTGCAGGCGATCCAGCACTTCACCAGGCTGACGTACCTGGACCTGGAGGACACCGGCATACTGGACGCGTTCCCGATGGAGGTCTGCTGCCTTGTCAACCTGGAGTTCCTCAACCTGTCCAGGAACAGGATCCTGTCGCTGCCCATGGAGCTGGGCAACCTGAGCCAGCTCAAGTACCTCCACCTGCGCGACAACTACTACATCCAGATCACGGTGCCTCCGGGCCTGATCTCGCGGCTCGCCAAGCTGCAGGTGCTGGACCTGTTCACCGCGAGCATCGTCTCCGTCGCGGACGACTACGTCGCGCCGGTCATCGACGACCTCGAGAGCAGCGGCGCGCGCATGCCGTGGCTCGGCATCTGGATGGACAACACCCGCGACGCGCGGAGGTTGGCGCGCCTGGCGCCGGGCGTGCGCGCCCGGTCGATCCACCTGCGCAAGCTGGACGGGGCGCGGACCCTGGAGCTGCTGTCGGCGCAGCACGCGGCGGAGCTCGGGGGCGTGCAGGAGGGCCTGCGGGAGCTGGCGGTGTACTCGTCCGACATCGAGGAGATCGTGGCGGACGCGCACGCGCCGAGGCTGGAGGTGGTCAAGTTCGGGTTCCTCGCGAGGCTCCGCGTCATGGAGTGGTCCCACGGCGCGGCGTCCAACCTCCGGGAGGTGGCCATCGGCGCGTGCCACGCGCTGACGCACATGACCTGGGTGCAGCACCTCCCTTGCCTCGAGTCGCTCAACCTCAGCGGCTGCAACGGCATGACGAGGCTGGTCGgcggcgtcgcggaggggggcagcgaggcggaggaggtggtgacgTTCCCGCGGCTGAGGCTGCTGGCGCTGCTGGGGCTGCCGAGGCTGGAGGACATCCGCGGCGGCGGCGGGGAGTGCGCGTTCCCGGAGCTGCGGAGGCTGCAGACCAGGGGGTGCTCGCGGCTGAGGCGCATACCCATGCGGCCGGTGGCCGGCGGGCAGGGCAGGGTGAGGGTGGAGGGCGACAAGCACTGGTGGAACGGGCTGCAGTGGGCGAGCGACGACGTCAAGGCCTGCTTCGTTCCGGTGCTGCTCTGAGGCTCTCGCGCTCACCGAATTGGAGTTTTGGCGCGTCCCTGGCCTGTTTGATGGTGGGTGATAAATAAGTCGGGCGGTAGGATGGCCAGGAACAACGAACAAAGCATACATGTAATATTTTTGCAGTCTATTTTGAGAAGACAAGGAGATTGGTTTGGGCTTTCTaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaaaaaaCGA


Protein sequences

Name Description Sequence
Ta.22337 translated coding region predicted by ESTScan from UniGene Ta.22337

XVPPTAHRCHCQPSQQPSTTFLPRSAAXAEPRNVPEKIDRTALALDLCXSAMEMQLAAVLATLTLGGALVVLFFGKWWQPLADGDKRVKELDDAVEAPAAAAGRRAQAAGRRAGAGAAARVNAARAGRAGRGGVRQGAARRGAALRRPPPAVLPHHGPRRRAGREAAQDRARHPGAGRGAARGRAGRAAGAAAAPPPARGAGAPARDGVRQALPQRGARLPRRLRRRARRLGRRRRGQDDGAEAGARRVRPRGAILRPRPPPGGLQGLHGGETPEGGRGRARPPRRADRAGAGRRDPELPQGQELPAPAGRRVGAPGPGEGGHPAALGGGGRSGEEGGRGVQERGGVPDMGCRKKIKMECMSEDDAWSLFEANAGEEAIRGDAQISTLARQVAAECNGLPLFLATVGRAMSNKRTAEEWGDAFDKLKKPQLTSTAPGQDKGAHALVKFCFDSLESDTVRECLLTCALWPEDHNISKDELVQCWIGLGLLPKYDDVDXVAPVRAHGGRHPGVGAPPGAGRQPPAQHVPVRHARPAPRRRPRRCAPARARQVAGPRGRRAPGAAPRRGAVARRGARVADAQRHRGGPRQGRRRALGRAAGVADAAVQPRPAAEDAAGDPALHQADVPGPGGHRHTGRVPDGGLLPCQPGVPQPVQEQDPVAAHGAGQPEPAQVPPPARQLLHPDHGASGPDLAARQAAGAGPVHREHRLRRGRLRRAGHRRPREQRRAHAVARHLDGQHPRRAEVGAPGAGRARPVDPPAQAGRGADPGAAVGAARGGARGRAGGPAGAGGVLVRHRGDRGGRARAEAGGGQVRVPREAPRHGVVPRRGVQPPGGGHRRVPRADAHDLGAAPPLPRVAQPQRLQRHDEAGRRRRGGGQRGGGGGDVPAAEAAGAAGAAEAGGHPRRRRGVRVPGAAEAADQGVLAAEAHTHAAGGRRAGQGEGGGRQALVERAAVGXATTSRPASFRCCSEALALTELEFWRVPGLFDGG

Domains

Domain Start-End Description Sequence

Seg: seg
56-72 seg

LAAVLATLTLGGALVVL

Seg: seg
94-152 seg

AVEAPAAAAGRRAQAAGRRAGAGAAARVNAARAGRAGRGGVRQGAARRGAALRRPPPAV

Seg: seg
170-206 seg

RARHPGAGRGAARGRAGRAAGAAAAPPPARGAGAPAR

Seg: seg
212-248 seg

ALPQRGARLPRRLRRRARRLGRRRRGQDDGAEAGARR

Seg: seg
250-298 seg

RPRGAILRPRPPPGGLQGLHGGETPEGGRGRARPPRRADRAGAGRRDPE

Seg: seg
306-347 seg

PAPAGRRVGAPGPGEGGHPAALGGGGRSGEEGGRGVQERGGV

HMMPfam: PF00931
IPR002182
351-490 NB-ARC,NBS
NB-ARC

GCRKKIKMECMSEDDAWSLFEANAGEEAIRGDAQISTLARQVAAECNGLPLFLATVGRAMSNKRTAEEWGDAFDKLKKPQLTSTAPGQDKGAHALVKFCFDSLESDTVRECLLTCALWPEDHNISKDELVQCWIGLGLLP

HMMPanther: PTHR10903:SF22
356-493 ATP BINDING / GTP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PRO,ATP BINDING / GTP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PRO

IKMECMSEDDAWSLFEANAGEEAIRGDAQISTLARQVAAECNGLPLFLATVGRAMSNKRTAEEWGDAFDKLKKPQLTSTAPGQDKGAHALVKFCFDSLESDTVRECLLTCALWPEDHNISKDELVQCWIGLGLLPKYD

HMMPanther: PTHR10903
356-493 GTPASE, IMAP FAMILY MEMBER-RELATED,GTPASE

IKMECMSEDDAWSLFEANAGEEAIRGDAQISTLARQVAAECNGLPLFLATVGRAMSNKRTAEEWGDAFDKLKKPQLTSTAPGQDKGAHALVKFCFDSLESDTVRECLLTCALWPEDHNISKDELVQCWIGLGLLPKYD

Seg: seg
501-525 seg

VRAHGGRHPGVGAPPGAGRQPPAQH

Seg: seg
527-607 seg

PVRHARPAPRRRPRRCAPARARQVAGPRGRRAPGAAPRRGAVARRGARVADAQRHRGGPRQGRRRALGRAAGVADAAVQPR

Seg: seg
703-722 seg

REHRLRRGRLRRAGHRRPRE

Seg: seg
760-790 seg

AGRGADPGAAVGAARGGARGRAGGPAGAGGV

Seg: seg
792-813 seg

VRHRGDRGGRARAEAGGGQVRV

Seg: seg
818-840 seg

PRHGVVPRRGVQPPGGGHRRVPR

Seg: seg
862-917 seg

QRHDEAGRRRRGGGQRGGGGGDVPAAEAAGAAGAAEAGGHPRRRRGVRVPGAAEAA

Seg: seg
923-946 seg

AAEAHTHAAGGRRAGQGEGGGRQA






List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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