PRGDB00077826 (Ta.43882)

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Ta.43882
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 241984818 (AK332078)
Gene Class CN
Domain Type Ser-Thr Kinase, NBS
Gene Species Triticum aestivum

Comment?

Triticum aestivum cDNA, clone: WT003_B12, cultivar: Chinese Spring

DNA Sequence

GGACTGCATACGCCGGCGCTGCTGCCTCGCACAACTTCGAGGGGGAGCTGTCCGCGGCGAGCGAAGTTCGGCATCTCCTTCTCGCCGCTCCGTGGCGGCGATGCCACCTCGGGCTATCAGCATAAAGGTGGCGAGGGAAGAAGATTTGTCCTCACACATTGGAAACGATGGCTTCTATTTTGATCTCGTCGACTTCGACAGGGTGAGGGCTTTCCAGATCCCGGATAACACGACTATGTCCCGATTGAAGGAGGAAATTGCAGTAGAGTTCAGCATCCCATCTCAATTTCAGCGCCTCTGGTTGTTTTGTAAAAGGCAAAACGGGACATGGCGTCCTGTTAGGCCATTCTCTACCGAAGAAAACAATCTATCTATGACTAGCCTTCATAAACTATTGTCAAGGACCTTCTTGTTCCTGAATCCTGATTGTGTGAAGCTGTTTTTGGAGGTGCTCAATGATTCTTCCCCACAAAATCTGAGCAACGATGATGGATTAGTGTTTTTAAAGCTTTATGACCCAGAACAAACGCAGATACGATATATTGGAATGCTGTTTGTAAAAGCTTCATCAAGGCCTTCAGATATTCTTCCGAAACTAAGAAGTCTAGCTGGTTTTTGTGCAGATGAGGAAATGGAATTATATGAGGAAATCAAATTCGAACCTTCTGCCATGTGTGAAGCCATAGATGCCAATATTACATTTTCAGAAAGCCAGATTGGGCATGGGGATATCATTTGCTACCAGAAAAGCTCGAAGTCTTTGAGCCACCATGCATACCCTTCTGTTGAAATATTCTTCAAGCGTATTCATGATTTGAAGGCAGTTGTTCCGGGGGAGCAAAGGAAGATATTAGCTCTGGAAGAGGAGGTTGCTAGGTTAAAACATCAGTCTGACCTTCAAACAGAGAAGGCAAACATGGGTAGTTCTACTAACCAAGAACTTGTCTAACTTCTCATTCTCCATTGTTTAAAAGTACACTATAAATTTGTAGCAGCAACATATAAGATACACCAATGCAATGCAGAATGCCAGCGATTTAAACGTGAGCGAGACAATGCGGTACGACAGCTGAATGAGCTGCAGGATCAGAATCCTCAGATTTTCCTCGAGTTTCCCATCACAAATTTGCTGCAAGCAACGGAGAACTTCAGTGACTTGTGTAAGGTTGGAGACACCGAATATGGACGTGTATATAAAGGCATTATACACGATACTACAGTAGCTATCAAGCTATGCAGATCTGATATTTTATTTCAACAAGAGGTTTCTATTCTTCGTCAAGGCAGACATCCAAGCATTGTCAACTGCATTGGAAAATGTTCTGAAGTTTCAGCTCTTGTGTACGAGTGGTTGCCAAACGGAAACCTCCAAGATCACATTGTTTGTGCTAATGGCTCTACACCTCTCTCGTGGCAGATCCGCACACAGATCATCGGTGAGATTTGTTCTGCGCTGCTGTTCCTGCATTCGTGTGAGCCTCATGCTTTGGTCCATGGCGATCTACGTCCTTGTAACATATTTGCCAATGCCAACTTCAGAAGCAAGATCTGCAACTTTGGTATGTTAACCCTGTTTCTCCAGCCCGGCAACCACCAACCAGCTCTGACAGCCAGGTTGCCATACCTGGACCCAGAGTTCCTCACCACCGGAGAGCTCACACCCCTTTCTGATGTCTACTCTCTGGGTGTTATCATCCTGTGTCTCTTGACTGGATTGCCTCCCTTGACTATTGCAAAGAAAGTTTCAGAAGCATTGGAGAATAATAGCTTGCACACGCTGATTGATAAATCAGCAGGGAACTGGCCTTATGTACAAGCCAAGCAGTTAGCCGTCATTGGTCTTAGCTGTGTGGAAATGACGAGGGAAAAGCGACCTGATCTCTTAACAAAGGTATGGCCAGTTGTTGAGCCCCTTATCAGGAAGCCTCCTGCAGCCCCATGGCCATATGTCCAATCGGCAGTTACAGGAAGTTCCGCGCCTGGCCACTTGATTTGTCCAATTCGCATGGATATTATGAAGGATCCTCAAGTGGCATCTGATGGATTCACTTACGAAGCAGAAGCCATAAGGCGCTGGTTTGATGGCGGGAACAACAGGTCTCCGATGACGAACTTGCCGCTAGCAAATCGTGATCTCGTCCCAAATCGCGCCGTCCTCTCTTCCATCCAGGAGTACCATGAACAGCAGAGGCAGCCAGGTTCCTGAACCTCAATCTTCTGACGACATTAGGGCAATAGGGCTATATGTATATGTATAACTTGCTGCGTAGGTATCCTGTACATTCGCGACCAGTTTACCTCTAGTCGATCTTGTTATGTTCACAATCTGTAGCATGACGAACCAAGGATTGATCTTGTTATGTTGAAAATCTACTAATTaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacgaaaaaaaaaaaaaaaaCGA


Protein sequences

Name Description Sequence
Ta.43882 translated coding region predicted by ESTScan from UniGene Ta.43882

XDCIRRRCCLAQLRGGAVRGERSSASPSRRSVAAMPPRAISIKVAREEDLSSHIGNDGFYFDLVDFDRVRAFQIPDNTTMSRLKEEIAVEFSIPSQFQRLWLFCKRQNGTWRPVRPFSTEENNLSMTSLHKLLSRTFLFLNPDCVKLFLEVLNDSSPQNLSNDDGLVFLKLYDPEQTQIRYIGMLFVKASSRPSDILPKLRSLAGFCADEEMELYEEIKFEPSAMCEAIDANITFSESQIGHGDIICYQKSSKSLSHHAYPSVEIFFKRIHDLKAVVPGEQRKILALEEEVARLKHQSDLQTEKANMGSSTNQELVXLLILHCLKVHYKFVAATYKIHQCNAECQRFKRERDNAVRQLNELQDQNPQIFLEFPITNLLQATENFSDLCKVGDTEYGRVYKGIIHDTTVAIKLCRSDILFQQEVSILRQGRHPSIVNCIGKCSEVSALVYEWLPNGNLQDHIVCANGSTPLSWQIRTQIIGEICSALLFLHSCEPHALVHGDLRPCNIFANANFRSKICNFGMLTLFLQPGNHQPALTARLPYLDPEFLTTGELTPLSDVYSLGVIILCLLTGLPPLTIAKKVSEALENNSLHTLIDKSAGNWPYVQAKQLAVIGLSCVEMTREKRPDLLTKVWPVVEPLIRKPPAAPWPYVQSAVTGSSAPGHLICPIRMDIMKDPQVASDGFTYEAEAIRRWFDGGNNRSPMTNLPLANRDLVPNRAVLSSIQEYHEQQRQPGS

Domains

Domain Start-End Description Sequence

Seg: seg
22-39 seg

RSSASPSRRSVAAMPPRA

Coil: coil
277-305 coiled-coil

VPGEQRKILALEEEVARLKHQSDLQTEKA

Coil: coil
337-365 coiled-coil

IHQCNAECQRFKRERDNAVRQLNELQDQN

HMMPanther: PTHR24420:SF448
345-706 SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED

QRFKRERDNAVRQLNELQDQNPQIFLEFPITNLLQATENFSDLCKVGDTEYGRVYKGIIHDTTVAIKLCRSDILFQQEVSILRQGRHPSIVNCIGKCSEVSALVYEWLPNGNLQDHIVCANGSTPLSWQIRTQIIGEICSALLFLHSCEPHALVHGDLRPCNIFANANFRSKICNFGMLTLFLQPGNHQPALTARLPYLDPEFLTTGELTPLSDVYSLGVIILCLLTGLPPLTIAKKVSEALENNSLHTLIDKSAGNWPYVQAKQLAVIGLSCVEMTREKRPDLLTKVWPVVEPLIRKPPAAPWPYVQSAVTGSSAPGHLICPIRMDIMKDPQVASDGFTYEAEAIRRWFDGGNNRSPMTNL

HMMPanther: PTHR24420
345-706 FAMILY NOT NAMED,FAMILY NOT NAMED

QRFKRERDNAVRQLNELQDQNPQIFLEFPITNLLQATENFSDLCKVGDTEYGRVYKGIIHDTTVAIKLCRSDILFQQEVSILRQGRHPSIVNCIGKCSEVSALVYEWLPNGNLQDHIVCANGSTPLSWQIRTQIIGEICSALLFLHSCEPHALVHGDLRPCNIFANANFRSKICNFGMLTLFLQPGNHQPALTARLPYLDPEFLTTGELTPLSDVYSLGVIILCLLTGLPPLTIAKKVSEALENNSLHTLIDKSAGNWPYVQAKQLAVIGLSCVEMTREKRPDLLTKVWPVVEPLIRKPPAAPWPYVQSAVTGSSAPGHLICPIRMDIMKDPQVASDGFTYEAEAIRRWFDGGNNRSPMTNL

superfamily: SSF56112
IPR011009
356-649 Protein kinase-like (PK-like)
Protein kinase-like domain

RQLNELQDQNPQIFLEFPITNLLQATENFSDLCKVGDTEYGRVYKGIIHDTTVAIKLCRSDILFQQEVSILRQGRHPSIVNCIGKCSEVSALVYEWLPNGNLQDHIVCANGSTPLSWQIRTQIIGEICSALLFLHSCEPHALVHGDLRPCNIFANANFRSKICNFGMLTLFLQPGNHQPALTARLPYLDPEFLTTGELTPLSDVYSLGVIILCLLTGLPPLTIAKKVSEALENNSLHTLIDKSAGNWPYVQAKQLAVIGLSCVEMTREKRPDLLTKVWPVVEPLIRKPPAAPWP

Gene3D: G3DSA:3.30.200.20
369-438 no description

FLEFPITNLLQATENFSDLCKVGDTEYGRVYKGIIHDTTVAIKLCRSDILFQQEVSILRQGRHPSIVNCI

ProfileScan: PS50011
IPR000719
384-640 PROTEIN_KINASE_DOM
Protein kinase, catalytic domain

FSDLCKVGDTEYGRVYKGIIHDTTVAIKLCRSDILFQQEVSILRQGRHPSIVNCIGKCSEVSALVYEWLPNGNLQDHIVCANGSTPLSWQIRTQIIGEICSALLFLHSCEPHALVHGDLRPCNIFANANFRSKICNFGMLTLFLQPGNHQPALTARLPYLDPEFLTTGELTPLSDVYSLGVIILCLLTGLPPLTIAKKVSEALENNSLHTLIDKSAGNWPYVQAKQLAVIGLSCVEMTREKRPDLLTKVWPVVEPLI

HMMSmart: SM00220
IPR002290
384-636 Serine/Threonine protein kinases, catalytic
Serine/threonine- / dual-specificity protein kinas

FSDLCKVGDTEYGRVYKGIIHDTTVAIKLCRSDILFQQEVSILRQGRHPSIVNCIGKCSEVSALVYEWLPNGNLQDHIVCANGSTPLSWQIRTQIIGEICSALLFLHSCEPHALVHGDLRPCNIFANANFRSKICNFGMLTLFLQPGNHQPALTARLPYLDPEFLTTGELTPLSDVYSLGVIILCLLTGLPPLTIAKKVSEALENNSLHTLIDKSAGNWPYVQAKQLAVIGLSCVEMTREKRPDLLTKVWPVV

HMMSmart: SM00219
IPR020635
384-632 Tyrosine kinase, catalytic domain
Tyrosine-protein kinase, catalytic domain

FSDLCKVGDTEYGRVYKGIIHDTTVAIKLCRSDILFQQEVSILRQGRHPSIVNCIGKCSEVSALVYEWLPNGNLQDHIVCANGSTPLSWQIRTQIIGEICSALLFLHSCEPHALVHGDLRPCNIFANANFRSKICNFGMLTLFLQPGNHQPALTARLPYLDPEFLTTGELTPLSDVYSLGVIILCLLTGLPPLTIAKKVSEALENNSLHTLIDKSAGNWPYVQAKQLAVIGLSCVEMTREKRPDLLTKV

HMMPfam: PF00069
IPR017442
388-627 Pkinase,Ser-thr
Serine/threonine-protein kinase-like domain

CKVGDTEYGRVYKGIIHDTTVAIKLCRSDILFQQEVSILRQGRHPSIVNCIGKCSEVSALVYEWLPNGNLQDHIVCANGSTPLSWQIRTQIIGEICSALLFLHSCEPHALVHGDLRPCNIFANANFRSKICNFGMLTLFLQPGNHQPALTARLPYLDPEFLTTGELTPLSDVYSLGVIILCLLTGLPPLTIAKKVSEALENNSLHTLIDKSAGNWPYVQAKQLAVIGLSCVEMTREKRPD

Gene3D: G3DSA:1.10.510.10
439-627 no description

GKCSEVSALVYEWLPNGNLQDHIVCANGSTPLSWQIRTQIIGEICSALLFLHSCEPHALVHGDLRPCNIFANANFRSKICNFGMLTLFLQPGNHQPALTARLPYLDPEFLTTGELTPLSDVYSLGVIILCLLTGLPPLTIAKKVSEALENNSLHTLIDKSAGNWPYVQAKQLAVIGLSCVEMTREKRPD

superfamily: SSF57850
659-733 RING/U-box,NBS

SAPGHLICPIRMDIMKDPQVASDGFTYEAEAIRRWFDGGNNRSPMTNLPLANRDLVPNRAVLSSIQEYHEQQRQP

Gene3D: G3DSA:3.30.40.10
IPR013083
661-730 no description
Zinc finger, RING/FYVE/PHD-type

PGHLICPIRMDIMKDPQVASDGFTYEAEAIRRWFDGGNNRSPMTNLPLANRDLVPNRAVLSSIQEYHEQQ

HMMPfam: PF04564
IPR003613
661-731 U-box
U box domain

PGHLICPIRMDIMKDPQVASDGFTYEAEAIRRWFDGGNNRSPMTNLPLANRDLVPNRAVLSSIQEYHEQQR

HMMSmart: SM00504
IPR003613
663-726 Modified RING finger domain
U box domain

HLICPIRMDIMKDPQVASDGFTYEAEAIRRWFDGGNNRSPMTNLPLANRDLVPNRAVLSSIQEY






List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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