PRGDB00077993 (Ta.56741)

Ta.56741
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	241983145 (AK331085)
Gene Class	N
Domain Type	NBS
Gene Species	Triticum aestivum
	Comment?

Triticum aestivum cDNA, clone: SET6_A14, cultivar: Chinese Spring

DNA Sequence

GAGCCATCCTAGGGTTCACTATTTTGTTCAATATATTGTACATTCTGGCGCTTACGCACTTGAGCCCTCCCAGCGGCTCAAACACAGTTTCGGACCAAGAGAATGAGAATGAGACAAACACTTCAACACCGATGGGTACTAATGATGAAGCCACAAATCGAGCAACTCAGACACAAATCACCCTGCCTTTCCAGCCTCTTGCACTATCTTTCAACCATGTAAACTATTACGTGGACATGCCTGCAGAAATGAGAGAGCAAGGATTCGCCGAAAGTCGTCTCCAGTTGCTCTCTGATATCAGTGGTGCTTTTAGGCCAGGTGTTCTGACAGCATTAGTTGGTGTGAGTGGAGCTGGGAAAACCACTCTAATGGATGTCCTCGCAGGAAGGAAAACCAGTGGGTCGATTGAAGGAAGCATCACCCTCTCTGGTTACCCTAAAAAGCAAGAAACTTTTGCCCGCATCAGTGGCTACTGCGAACAGACCGATATCCATTCACCAAATGTTACTGTATATGAATCCATTCTCTACTCTGCCTGGCTGCGTCTTTCCTCAGATGTTGACGAAAAAACGAGAAAGTTGTTTGTGGAGGAAGTCATGACTCTTGTGGAGCTTGATGTGTTGCGTAATGCTATGGTTGGCCTCCCTGGAGTGGACGGGTTATCGACCGAACAAAGAAAGAGACTGACAATTGCCGTGGAGCTGGTAGCAAATCCTTCAATCATATTCATGGATGAGCCAACTTCTGGACTTGATGCTAGAGCCGCAGCAATTGTAATGCGGGCAGTGAGAAATACAGTCAACACTGGGCGAACTGTGGTTTGCACTATCCATCAACCCAGCATTGATATATTCGAGTCTTTTGACGAGCTTCTGCTTATGAAAAGAGGAGGACAAGTTATTTATGCTGGTGAACTTGGTCGCCACTCTTATAAACTAGTTGAATATTTTGAGGCAATTCCAGGTGTTGAAAAGATCACACAAGGATATAATCCCGCAACATGGATGCTGGAAGTTAGCTCCCCTTTAGCCGAGGCTCGCCTGAACGTAAACTTTGCTGAAATTTATGCTAATTCTGAACTTTATAGGGAAAACCAACAACTTATTAAGGAATTAAGCGTTCCTCCGCCAGGCTACGAGGATCTCTCATTCCCTACCAAGTATTCTCAGAATTTCTACAACCAATGCATTGCAAACTTCTGGAAGCAATACAAATCATATTGGAAGAATCCGCCCCACAACGCCATGCGCTTTCTCATGACCATGATTAATGGCCTTGTATTTGGCACGGTGTTTTGGCAGATAGGGACGAAAATAGGCTCGCAACAAGATCTCTTCAATCTACTTGGAGCCACTTATGCTGCTGTCTTCTTCCTTGGAGCCGCCAACTGCATCACGGTTCAGCCTGTTGTGTCAATCGAGCGAACAGTTTTCTACCGTGAAAAGGCGGCAGGGATGTACTCTCCGTTATCCTATGCATTCGCTCAGACATGCGTGGAGGTGATGTACAACATCGTGCAGGGGATTGAATACACGGCGATCATCTATGCGATGATTGGATATGAGTGGAAAGCGGCAAAGTTCTTCTATTTCCTCTTCTTCATAGTTTCAAGCTTCAACTACTTCACATTGTTTGGCATGATGCTGGTGTCACTGACTCCCTCTTCCATGCTCGCAAACATACTGATATCCTTTGTACTCCCTCTTTGGAACCTGTTTGCTGGGTTCCTCGTCGTCAGACCGTTGATACCCATCTGGTGGAGGTGGTACTACTGGGCCAACCCTGTGTCATGGACCATCTACGGCGTGGTGGCGTCGCAGTTTGGCGACAACAAGAGTCCTCTCAAGGTCCCCGGCGGGAGCGACACGTTTGTGAAGCAGTTCTTGGAGGACAACCTGGGCATCAAGCACGATTTCCTTGGGTATGTGGTGCTGGCGCACTTTGCGTTCATCATCGCCTTCTTCTTTGTGTTTGGCTACTCCATCAAGGTGTTGAACTTCCAGAAACGTTAGGCCTTCTTCTTTATTTAATTTATATATAATATAGTGTTTGTGTGTATATGAATGAATGCAATGTAATGTATAGTAGAAAGAGTAGAGTTGACAAGGGAAATTGTTGCATAGATAGGCCAGACCTGGTACGTATAAATTAGAGGAATGAGACGAGAGGTGGTGGTGACATGATGCCTAttttttgttttgttttACCATTGACATTGATATATTAAATACGAAAAGTTCATTTTTGGTGCaaaaaaaaaaaaaaaaCGA

Protein sequences

Name	Description	Sequence
Ta.56741	translated coding region predicted by ESTScan from UniGene Ta.56741	XAILGFTILFNILYILALTHLSPPSGSNTVSDQENENETNTSTPMGTNDEATNRATQTQITLPFQPLALSFNHVNYYVDMPAEMREQGFAESRLQLLSDISGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTSGSIEGSITLSGYPKKQETFARISGYCEQTDIHSPNVTVYESILYSAWLRLSSDVDEKTRKLFVEEVMTLVELDVLRNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVNTGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGELGRHSYKLVEYFEAIPGVEKITQGYNPATWMLEVSSPLAEARLNVNFAEIYANSELYRENQQLIKELSVPPPGYEDLSFPTKYSQNFYNQCIANFWKQYKSYWKNPPHNAMRFLMTMINGLVFGTVFWQIGTKIGSQQDLFNLLGATYAAVFFLGAANCITVQPVVSIERTVFYREKAAGMYSPLSYAFAQTCVEVMYNIVQGIEYTAIIYAMIGYEWKAAKFFYFLFFIVSSFNYFTLFGMMLVSLTPSSMLANILISFVLPLWNLFAGFLVVRPLIPIWWRWYYWANPVSWTIYGVVASQFGDNKSPLKVPGGSDTFVKQFLEDNLGIKHDFLGYVVLAHFAFIIAFFFVFGYSIKVLNFQKR

Domains

Domain	Start-End	Description	Sequence
HMMPfam: PF08370 IPR013581	2-29	PDR_assoc Plant PDR ABC transporter associated	AILGFTILFNILYILALTHLSPPSGSNT
HMMPanther: PTHR19241:SF10	31-670	ATP-BINDING CASSETTE TRANSPORTER (PDR),ATP-BINDING CASSETTE TRANSPORTER (PDR)	SDQENENETNTSTPMGTNDEATNRATQTQITLPFQPLALSFNHVNYYVDMPAEMREQGFAESRLQLLSDISGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTSGSIEGSITLSGYPKKQETFARISGYCEQTDIHSPNVTVYESILYSAWLRLSSDVDEKTRKLFVEEVMTLVELDVLRNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVNTGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGELGRHSYKLVEYFEAIPGVEKITQGYNPATWMLEVSSPLAEARLNVNFAEIYANSELYRENQQLIKELSVPPPGYEDLSFPTKYSQNFYNQCIANFWKQYKSYWKNPPHNAMRFLMTMINGLVFGTVFWQIGTKIGSQQDLFNLLGATYAAVFFLGAANCITVQPVVSIERTVFYREKAAGMYSPLSYAFAQTCVEVMYNIVQGIEYTAIIYAMIGYEWKAAKFFYFLFFIVSSFNYFTLFGMMLVSLTPSSMLANILISFVLPLWNLFAGFLVVRPLIPIWWRWYYWANPVSWTIYGVVASQFGDNKSPLKVPGGSDTFVKQFLEDNLGIKHDFLGYVVLAHFAFIIAFFFVFGYSIKVLNFQKR
HMMPanther: PTHR19241	31-670	FAMILY NOT NAMED,ATP-BINDING CASSETTE TRANSPORTER	SDQENENETNTSTPMGTNDEATNRATQTQITLPFQPLALSFNHVNYYVDMPAEMREQGFAESRLQLLSDISGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTSGSIEGSITLSGYPKKQETFARISGYCEQTDIHSPNVTVYESILYSAWLRLSSDVDEKTRKLFVEEVMTLVELDVLRNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVNTGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGELGRHSYKLVEYFEAIPGVEKITQGYNPATWMLEVSSPLAEARLNVNFAEIYANSELYRENQQLIKELSVPPPGYEDLSFPTKYSQNFYNQCIANFWKQYKSYWKNPPHNAMRFLMTMINGLVFGTVFWQIGTKIGSQQDLFNLLGATYAAVFFLGAANCITVQPVVSIERTVFYREKAAGMYSPLSYAFAQTCVEVMYNIVQGIEYTAIIYAMIGYEWKAAKFFYFLFFIVSSFNYFTLFGMMLVSLTPSSMLANILISFVLPLWNLFAGFLVVRPLIPIWWRWYYWANPVSWTIYGVVASQFGDNKSPLKVPGGSDTFVKQFLEDNLGIKHDFLGYVVLAHFAFIIAFFFVFGYSIKVLNFQKR
superfamily: SSF52540	61-308	P-loop containing nucleoside triphosphate hydrolases	TLPFQPLALSFNHVNYYVDMPAEMREQGFAESRLQLLSDISGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTSGSIEGSITLSGYPKKQETFARISGYCEQTDIHSPNVTVYESILYSAWLRLSSDVDEKTRKLFVEEVMTLVELDVLRNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVNTGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGELGR
ProfileScan: PS50893 IPR003439	69-322	ABC_TRANSPORTER_2 ABC transporter-like	LSFNHVNYYVDMPAEMREQGFAESRLQLLSDISGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTSGSIEGSITLSGYPKKQETFARISGYCEQTDIHSPNVTVYESILYSAWLRLSSDVDEKTRKLFVEEVMTLVELDVLRNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVNTGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGELGRHSYKLVEYFEAIPG
Gene3D: G3DSA:3.40.50.300	70-305	no description	SFNHVNYYVDMPAEMREQGFAESRLQLLSDISGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTSGSIEGSITLSGYPKKQETFARISGYCEQTDIHSPNVTVYESILYSAWLRLSSDVDEKTRKLFVEEVMTLVELDVLRNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVNTGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGE
HMMSmart: SM00382 IPR003593	106-298	ATPases associated with a variety of cellula,NBS AAA+ ATPase domain	PGVLTALVGVSGAGKTTLMDVLAGRKTSGSIEGSITLSGYPKKQETFARISGYCEQTDIHSPNVTVYESILYSAWLRLSSDVDEKTRKLFVEEVMTLVELDVLRNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVNTGRTVVCTIHQPSIDIFESFDELLLMKRGG
HMMPfam: PF00005 IPR003439	121-249	ABC_tran ABC transporter-like	TTLMDVLAGRKTSGSIEGSITLSGYPKKQETFARISGYCEQTDIHSPNVTVYESILYSAWLRLSSDVDEKTRKLFVEEVMTLVELDVLRNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTS
Seg: seg	253-276	seg	ARAAAIVMRAVRNTVNTGRTVVCT
HMMPfam: PF01061 IPR013525	395-608	ABC2_membrane ABC-2 type transporter	QCIANFWKQYKSYWKNPPHNAMRFLMTMINGLVFGTVFWQIGTKIGSQQDLFNLLGATYAAVFFLGAANCITVQPVVSIERTVFYREKAAGMYSPLSYAFAQTCVEVMYNIVQGIEYTAIIYAMIGYEWKAAKFFYFLFFIVSSFNYFTLFGMMLVSLTPSSMLANILISFVLPLWNLFAGFLVVRPLIPIWWRWYYWANPVSWTIYGVVASQF
Seg: seg	528-539	seg	FFYFLFFIVSSF
Seg: seg	648-658	seg	FAFIIAFFFVF

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Analyses

Blast

Blast matches against Reference R-Genes. Show