PRGDB00078142 (Tcc.2489)

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Tcc.2489
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 213630219 (CU548164)
Gene Class Unknown
Domain Type
Gene Species Theobroma cacao

Comment?

CU548164 EPIC23I_KZ0AAS Theobroma cacao cDNA clone KZ0AAS1YM13, mRNA sequence

DNA Sequence

ttttttttttttttttGCAAAACATCAAGTTATTAGGAAAAAATAACAAAAGACAGCATACATCTTAAGCAACCAAACATCACAGTCATTAGGGACAATGTTAGGGGGACTCTTCACTTGAGCAGCCCCTTAGCGTTCAGGTATTCTACAGTTTGGTCGTAAATTTCCCCAATCCCAAACTTAAAGCTGAATCCTTCATTAATAAGCTTATCCGAGGAAATGATCAACTTGGCTTTAAAGGGGAAATCCCCAAAATCAGTAGGGACTTTGAACTCAGGGTATCTTTGGTTGAGGAACTTAGCAAGCTCAGGAACACTGGAATTGACAGCACAGCATATATATCGGCCGGATGCAAATTCTTTTTCTGCCAAAAAAACATGGGCCCGACAGACGTCCCCCACATGAGTGATAAAAATTGAACCTGACAACATTTGCATACCTTTCAAAGCATTTACAAGGAATTCGTTGCCTGAAAGCAAAAATGTGGCAAGGCCAATGCTGCTGGGCACGTCTGGGGTGAAAAAAGGACCGGTCATGAGAGAAGGGATGACCGTGATGAGATCGATGTTGTTTTCTTGAGCAAATTTCCATGCTGCCTTTTCAGCCAATGTCTTGGATGCAGGGTACCCCCAAGTTGGTGGCTTTGCCGACGATAAGAACTCAACGTCGGTCCAGTCTTTCTCAGTCAGGACCAGATCTGTCCCCTTGAGTGTGTTGATAGACACAGCTGCGGCTGAAGAAGTCAAGACGACCCGTTTGACTGTTTTTGCTTTGGCACAAGCTTTCAAAACGTTCAGCACTCCCTGGATTGCTGGTTTGATCATGTCATTCTCAGGATCTTGAGAAGCAAAATTGACGGGTGTTGCAACATGGAAGACAAGGTCACAACCAGCTATGGGGACATCAAAGCTGCCTTCATCAGTCAAATCTGCTCGAAAGATTTTCAAGTCTCCTAGCTTTTGTAGTGTTACGAGGTGAGGGATCTTTTTCTGGTTGTCTGGGTCCCTGACAGTAGTGTTAACAGCGTAGCCCTTCTCAAGCAACAGCTTGACCAACAAAGATGCAACGTATCCGGTGCCACCTACGACACAAGCGGTCTTTTTGCCTACGGTCTGGCTGGCCATGGCTTCAATGACTATATTCCTTTTCTTGACCGGGTACCTTActtttgcttttccgtttcgatttttttgggcttgttttgAACCCTTCAACCGTTCAGACAAAGATGCATCCCCG


Protein sequences

Name Description Sequence
Tcc.2489 translated coding region predicted by ESTScan from UniGene Tcc.2489

XGDASLSERLKGSKQAQKNRNGKAKVRYPVKKRNIVIEAMASQTVGKKTACVVGGTGYVASLLVKLLLEKGYAVNTTVRDPDNQKKIPHLVTLQKLGDLKIFRADLTDEGSFDVPIAGCDLVFHVATPVNFASQDPENDMIKPAIQGVLNVLKACAKAKTVKRVVLTSSAAAVSINTLKGTDLVLTEKDWTDVEFLSSAKPPTWGYPASKTLAEKAAWKFAQENNIDLITVIPSLMTGPFFTPDVPSSIGLATFLLSGNEFLVNALKGMQMLSGSIFITHVGDVCRAHVFLAEKEFASGRYICCAVNSSVPELAKFLNQRYPEFKVPTDFGDFPFKAKLIISSDKLINEGFSFKFGIGEIYDQTVEYLNAKGLLK

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR10366:SF9
32-375 CINNAMOYL-COA REDUCTASE,CINNAMOYL-COA REDUCTASE

KRNIVIEAMASQTVGKKTACVVGGTGYVASLLVKLLLEKGYAVNTTVRDPDNQKKIPHLVTLQKLGDLKIFRADLTDEGSFDVPIAGCDLVFHVATPVNFASQDPENDMIKPAIQGVLNVLKACAKAKTVKRVVLTSSAAAVSINTLKGTDLVLTEKDWTDVEFLSSAKPPTWGYPASKTLAEKAAWKFAQENNIDLITVIPSLMTGPFFTPDVPSSIGLATFLLSGNEFLVNALKGMQMLSGSIFITHVGDVCRAHVFLAEKEFASGRYICCAVNSSVPELAKFLNQRYPEFKVPTDFGDFPFKAKLIISSDKLINEGFSFKFGIGEIYDQTVEYLNAKGLLK

HMMPanther: PTHR10366
32-375 FAMILY NOT NAMED,NAD DEPENDENT EPIMERASE/DEHYDRATASE

KRNIVIEAMASQTVGKKTACVVGGTGYVASLLVKLLLEKGYAVNTTVRDPDNQKKIPHLVTLQKLGDLKIFRADLTDEGSFDVPIAGCDLVFHVATPVNFASQDPENDMIKPAIQGVLNVLKACAKAKTVKRVVLTSSAAAVSINTLKGTDLVLTEKDWTDVEFLSSAKPPTWGYPASKTLAEKAAWKFAQENNIDLITVIPSLMTGPFFTPDVPSSIGLATFLLSGNEFLVNALKGMQMLSGSIFITHVGDVCRAHVFLAEKEFASGRYICCAVNSSVPELAKFLNQRYPEFKVPTDFGDFPFKAKLIISSDKLINEGFSFKFGIGEIYDQTVEYLNAKGLLK

superfamily: SSF51735
37-370 NAD(P)-binding Rossmann-fold domains

IEAMASQTVGKKTACVVGGTGYVASLLVKLLLEKGYAVNTTVRDPDNQKKIPHLVTLQKLGDLKIFRADLTDEGSFDVPIAGCDLVFHVATPVNFASQDPENDMIKPAIQGVLNVLKACAKAKTVKRVVLTSSAAAVSINTLKGTDLVLTEKDWTDVEFLSSAKPPTWGYPASKTLAEKAAWKFAQENNIDLITVIPSLMTGPFFTPDVPSSIGLATFLLSGNEFLVNALKGMQMLSGSIFITHVGDVCRAHVFLAEKEFASGRYICCAVNSSVPELAKFLNQRYPEFKVPTDFGDFPFKAKLIISSDKLINEGFSFKFGIGEIYDQTVEYLNA

Gene3D: G3DSA:3.40.50.720
IPR016040
47-318 no description
NAD(P)-binding domain

KKTACVVGGTGYVASLLVKLLLEKGYAVNTTVRDPDNQKKIPHLVTLQKLGDLKIFRADLTDEGSFDVPIAGCDLVFHVATPVNFASQDPENDMIKPAIQGVLNVLKACAKAKTVKRVVLTSSAAAVSINTLKGTDLVLTEKDWTDVEFLSSAKPPTWGYPASKTLAEKAAWKFAQENNIDLITVIPSLMTGPFFTPDVPSSIGLATFLLSGNEFLVNALKGMQMLSGSIFITHVGDVCRAHVFLAEKEFASGRYICCAVNSSVPELAKFLN

HMMPfam: PF01370
IPR001509
51-301 Epimerase
NAD-dependent epimerase/dehydratase

CVVGGTGYVASLLVKLLLEKGYAVNTTVRDPDNQKKIPHLVTLQKLGDLKIFRADLTDEGSFDVPIAGCDLVFHVATPVNFASQDPENDMIKPAIQGVLNVLKACAKAKTVKRVVLTSSAAAVSINTLKGTDLVLTEKDWTDVEFLSSAKPPTWGYPASKTLAEKAAWKFAQENNIDLITVIPSLMTGPFFTPDVPSSIGLATFLLSGNEFLVNALKGMQMLSGSIFITHVGDVCRAHVFLAEKEFASGRY






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Analyses

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