PRGDB00078676 (Vvi.7945)

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Vvi.7945
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 225450341 (XM_002268734)
Gene Class RLK
Domain Type Ser-Thr Kinase, Receptor-Like Kinase
Gene Species Vitis vinifera

Comment?

PREDICTED: Vitis vinifera hypothetical protein LOC100261425 (LOC100261425), mRNA

DNA Sequence

ATGGCTGCCAGGTTCTTTCTTCTTCTTGTCCTTCCATCTTTAGTGTTGTCTCAATATTGCACTGATCTTGACATTACAGCCTCCCAGGACTCGCCTAGATGTGTATCACCTTCTGGTGAATTTGCCTTTGGGTTTTACCGCCTTGGCAGTCAAAGTCTCTTCTTGCTTGCTATCTGGTTCGAAAACATACCGGAAAAAACCTTAGTTTGGTATGCAAATGGAGATAACCCGGCTCCTAAAGGATCCAAACTTGAACTTACCTCTGATGGCCAGTTCATACTAAGTGATCCACAAGGCAAAGAGATATGGAGACCTCAGAACTCTGTAACCGCGGTCACTCATGCTGCCATGCTTGATACTGGTAACTTTGTTCTTGAAAATAGGAATCAAAATCTTACAGTGTGGCAGAGCTTCCAGAATCCAGCCAACACCATCTTGCCAACTCAAACACTGGAAATCGGTGGCACCATGTATTCTCAGCAGTCAAACAGCAGCTACTCAAAGGGGAGGTTCCAGCTTCAAATGAAAGCTGGTGGCAATCTCGTACTTAATACCTTGGACCCAGAATCTGGTAAAGCATATGATGTTTATTATTCAATTTACACCAGTGATGCTGCAAATAGCAGCAATTCTGGCCTACGGTTGATTTTTGATGAGTCAGGTGGCATCTATGTTCTTCTAAGGAATGGAGGTACTGTTAACATCACCTCCGGAAGTAGCTTGACGGGAGATTACTATTACCGGGCAACGCTTGACCAGGACGGAGTTTTCAGGCTATATAATCGTGACAACAGCAGTACTTCTTGGTCTGTTGTGAAAAACATTCCTGATAACATTTGTACCGTGACCCCAAGTAATCTTGGCAGTGGAATTTGTGGGTTCAACAGCTATTGTTCCATTGATGGAAGGGGGCTGCCTGATTGTCTATGCCCAGATGGGTACTCTCATTTGGATCCTCTTGACAGAAAACAAGGCTGTAAACCGAATTTTGAATTGCCCAGCTGCCAAACAGCTGTTGATGGATGGGAAGCAGACAAGGATGCAGTAGATTTCAGAGAATTAAAAGATGTCAACTGGCCATTATCTGATTATCAACTTCAGGAGGGACCTGAATTCAACAAGGAGAAGTGTAAACAGTCTTGCAAAGATGATTGCCTCTGTGTGGTTGCTATCTATAACACTGAGAATCAGTGTTGGAAGAAGAAGTTTCCTCTCTCAAATGGAAGACACGAACCTACACAAAATGTGCTCCAATACACAACTGCTCTCATCAAGGTACGGATTAAAAATGATACTATAGAGAGATGCCCAGACAAGTCTACCTTGATCCTTGTTGGGTCAGTACTCCTTGGCAGCTCTGTGTTCTTTAATCTCTTTCTGTTGTTAGCAATCCCTGCGGCTGCTCTCTTCTTCTACAACAAGAAACTGATGAATATCCAGTCCGTTTCAAGCAAATTCCCGACCACCAGTGTGAGAACTTATTCATACAAAGAGCTTGAAGAGGCAACCGGTGGATTCAAGGAGAAATTGGGCAGGGGAGCTTTTGGAACAGTTTATAAAGGGGTTTTGGCATCAGATGCTGGGAGATTTGTGGCAGTCAAGAAATTAGATAAGGTGGTACAGGAAGGCGAGAAGGAATTCAAAACAGAAGTCACTGTGATTGGGCAGACCCACCATAGGAATTTGGTCAGTTTGCTTGGCTATTGTGATCAGGGTGTGCACCGGCTTCTGGTATACGAGTACATGAACAATGGATCTTTAGCAGACTTGTTGTTTGGAATATCTACACCTGACTGGAGCCAAAGACTACAGATAGCCTTTAAGATTGCAAAAGGGCTAATGTATTTACACGAAGAGTGCAGCACCCCCATCATCCATTGTGATATAAAGCCTGAAAACATCCTCCTTGACGAGTACCTTACACCTAGGATTTCAGACTTCGGACTAGCAAAGCTTCTGATAAGAGATCATACTCGGACCCTTACAACCATCAGAGGGACCAAAGGATACGTTGCACCAGAATGGTTCAGGAGCAAGCCGATTACGGCGAAAGTGGATGTTTATAGTTATGGGGTTATGTTACTGGAGATCATCAGTTGCAGGAAGAGCGTACATTCACAGCCGGAAAATGAGGAGGAAGCAATACTTGCTGATTGGGCTTATGATTGCTATAGAGGCCACAGATTGGATAAGCTAGTGAAGAATGATGATGAAGCAGGAAAGGACATGGGGATGCTGGAGAGGGTAGTGATGGTTGCCATTTGGTGCATTCAAGAGGACCCTTCTTTGAGGCCCTCCATGGGAATGGTCATACTGATGCTTCAAGGAGTTGTTGAAGTTCCTGTGCCCCCTTGTCCTTTCCCCTTTAGTTCAACCTTCTGAAACTGCACATCCCTAAGACAGTATATACGCACCTACTCGTCTTTGCAATTCTGGAAGTTCCATATATTCAGTTGAATATCCATGTTTGTTCTAATGGTGTTTTCTTTGTTAGTATGGTTGCATTTTCTTGTTCTAATAGTACAAACAAGGTTGCTACACTACGGTTATAAATTTCAAGGTGGCAGGTAAACATCTAGATGGTCTTCTTCTCTTCCAGTTGATGTAACATGATTCACCAGCCCATGGCTTCCCTCGTATTCTCACCTTTACAGGTATTGAAAAATTGGCAAGTACTTGCTGCAGAAAGTCTCTTTTCTAGGTGTTTAGAAAATTCAAAGCCATTTGTGAACTCTTATCTATATAGAACTTTTGGCAACTTCACCAAAAGTCTTTCAAACTTTTGAAAGATTCAAAACATA


Protein sequences

Name Description Sequence
Vvi.7945 translated coding region predicted by ESTScan from UniGene Vvi.7945

MAARFFLLLVLPSLVLSQYCTDLDITASQDSPRCVSPSGEFAFGFYRLGSQSLFLLAIWFENIPEKTLVWYANGDNPAPKGSKLELTSDGQFILSDPQGKEIWRPQNSVTAVTHAAMLDTGNFVLENRNQNLTVWQSFQNPANTILPTQTLEIGGTMYSQQSNSSYSKGRFQLQMKAGGNLVLNTLDPESGKAYDVYYSIYTSDAANSSNSGLRLIFDESGGIYVLLRNGGTVNITSGSSLTGDYYYRATLDQDGVFRLYNRDNSSTSWSVVKNIPDNICTVTPSNLGSGICGFNSYCSIDGRGLPDCLCPDGYSHLDPLDRKQGCKPNFELPSCQTAVDGWEADKDAVDFRELKDVNWPLSDYQLQEGPEFNKEKCKQSCKDDCLCVVAIYNTENQCWKKKFPLSNGRHEPTQNVLQYTTALIKVRIKNDTIERCPDKSTLILVGSVLLGSSVFFNLFLLLAIPAAALFFYNKKLMNIQSVSSKFPTTSVRTYSYKELEEATGGFKEKLGRGAFGTVYKGVLASDAGRFVAVKKLDKVVQEGEKEFKTEVTVIGQTHHRNLVSLLGYCDQGVHRLLVYEYMNNGSLADLLFGISTPDWSQRLQIAFKIAKGLMYLHEECSTPIIHCDIKPENILLDEYLTPRISDFGLAKLLIRDHTRTLTTIRGTKGYVAPEWFRSKPITAKVDVYSYGVMLLEIISCRKSVHSQPENEEEAILADWAYDCYRGHRLDKLVKNDDEAGKDMGMLERVVMVAIWCIQEDPSLRPSMGMVILMLQGVVEVPVPPCPFPFSSTF

Domains

Domain Start-End Description Sequence

ProfileScan: PS50927
IPR001480
20-138 BULB_LECTIN
Bulb-type lectin domain

CTDLDITASQDSPRCVSPSGEFAFGFYRLGSQSLFLLAIWFENIPEKTLVWYANGDNPAPKGSKLELTSDGQFILSDPQGKEIWRPQNSVTAVTHAAMLDTGNFVLENRNQNLTVWQSF

HMMSmart: SM00108
IPR001480
22-141 B_lectin
Bulb-type lectin domain

DLDITASQDSPRCVSPSGEFAFGFYRLGSQSLFLLAIWFENIPEKTLVWYANGDNPAPKGSKLELTSDGQFILSDPQGKEIWRPQNSVTAVTHAAMLDTGNFVLENRNQNLTVWQSFQNP

HMMPanther: PTHR24420:SF815
36-793 PTHR24420:SF815

SPSGEFAFGFYRLGSQSLFLLAIWFENIPEKTLVWYANGDNPAPKGSKLELTSDGQFILSDPQGKEIWRPQNSVTAVTHAAMLDTGNFVLENRNQNLTVWQSFQNPANTILPTQTLEIGGTMYSQQSNSSYSKGRFQLQMKAGGNLVLNTLDPESGKAYDVYYSIYTSDAANSSNSGLRLIFDESGGIYVLLRNGGTVNITSGSSLTGDYYYRATLDQDGVFRLYNRDNSSTSWSVVKNIPDNICTVTPSNLGSGICGFNSYCSIDGRGLPDCLCPDGYSHLDPLDRKQGCKPNFELPSCQTAVDGWEADKDAVDFRELKDVNWPLSDYQLQEGPEFNKEKCKQSCKDDCLCVVAIYNTENQCWKKKFPLSNGRHEPTQNVLQYTTALIKVRIKNDTIERCPDKSTLILVGSVLLGSSVFFNLFLLLAIPAAALFFYNKKLMNIQSVSSKFPTTSVRTYSYKELEEATGGFKEKLGRGAFGTVYKGVLASDAGRFVAVKKLDKVVQEGEKEFKTEVTVIGQTHHRNLVSLLGYCDQGVHRLLVYEYMNNGSLADLLFGISTPDWSQRLQIAFKIAKGLMYLHEECSTPIIHCDIKPENILLDEYLTPRISDFGLAKLLIRDHTRTLTTIRGTKGYVAPEWFRSKPITAKVDVYSYGVMLLEIISCRKSVHSQPENEEEAILADWAYDCYRGHRLDKLVKNDDEAGKDMGMLERVVMVAIWCIQEDPSLRPSMGMVILMLQGVVEVPVPPCPFPFSSTF

HMMPanther: PTHR24420
36-793 PTHR24420,FAMILY NOT NAMED

SPSGEFAFGFYRLGSQSLFLLAIWFENIPEKTLVWYANGDNPAPKGSKLELTSDGQFILSDPQGKEIWRPQNSVTAVTHAAMLDTGNFVLENRNQNLTVWQSFQNPANTILPTQTLEIGGTMYSQQSNSSYSKGRFQLQMKAGGNLVLNTLDPESGKAYDVYYSIYTSDAANSSNSGLRLIFDESGGIYVLLRNGGTVNITSGSSLTGDYYYRATLDQDGVFRLYNRDNSSTSWSVVKNIPDNICTVTPSNLGSGICGFNSYCSIDGRGLPDCLCPDGYSHLDPLDRKQGCKPNFELPSCQTAVDGWEADKDAVDFRELKDVNWPLSDYQLQEGPEFNKEKCKQSCKDDCLCVVAIYNTENQCWKKKFPLSNGRHEPTQNVLQYTTALIKVRIKNDTIERCPDKSTLILVGSVLLGSSVFFNLFLLLAIPAAALFFYNKKLMNIQSVSSKFPTTSVRTYSYKELEEATGGFKEKLGRGAFGTVYKGVLASDAGRFVAVKKLDKVVQEGEKEFKTEVTVIGQTHHRNLVSLLGYCDQGVHRLLVYEYMNNGSLADLLFGISTPDWSQRLQIAFKIAKGLMYLHEECSTPIIHCDIKPENILLDEYLTPRISDFGLAKLLIRDHTRTLTTIRGTKGYVAPEWFRSKPITAKVDVYSYGVMLLEIISCRKSVHSQPENEEEAILADWAYDCYRGHRLDKLVKNDDEAGKDMGMLERVVMVAIWCIQEDPSLRPSMGMVILMLQGVVEVPVPPCPFPFSSTF

superfamily: SSF51110
IPR001480
50-271 B_lectin
Bulb-type lectin domain

SQSLFLLAIWFENIPEKTLVWYANGDNPAPKGSKLELTSDGQFILSDPQGKEIWRPQNSVTAVTHAAMLDTGNFVLENRNQNLTVWQSFQNPANTILPTQTLEIGGTMYSQQSNSSYSKGRFQLQMKAGGNLVLNTLDPESGKAYDVYYSIYTSDAANSSNSGLRLIFDESGGIYVLLRNGGTVNITSGSSLTGDYYYRATLDQDGVFRLYNRDNSSTSWSV

Gene3D: G3DSA:2.90.10.10
IPR001480
54-143 Bulb-type_lectin_dom
Bulb-type lectin domain

FLLAIWFENIPEKTLVWYANGDNPAPKGSKLELTSDGQFILSDPQGKEIWRPQNSVTAVTHAAMLDTGNFVLENRNQNLTVWQSFQNPAN

HMMPfam: PF01453
IPR001480
66-164 B_lectin
Bulb-type lectin domain

KTLVWYANGDNPAPKGSKLELTSDGQFILSDPQGKEIWRPQNSVTAVTHAAMLDTGNFVLENRNQNLTVWQSFQNPANTILPTQTLEIGGTMYSQQSNS

Gene3D: G3DSA:2.90.10.10
IPR001480
148-270 Bulb-type_lectin_dom
Bulb-type lectin domain

TQTLEIGGTMYSQQSNSSYSKGRFQLQMKAGGNLVLNTLDPESGKAYDVYYSIYTSDAANSSNSGLRLIFDESGGIYVLLRNGGTVNITSGSSLTGDYYYRATLDQDGVFRLYNRDNSSTSWS

Gene3D: G3DSA:2.60.120.200
IPR013320
437-524 ConA_like_subgrp
Concanavalin A-like lectin/glucanase, subgroup

PDKSTLILVGSVLLGSSVFFNLFLLLAIPAAALFFYNKKLMNIQSVSSKFPTTSVRTYSYKELEEATGGFKEKLGRGAFGTVYKGVLA

superfamily: SSF56112
IPR011009
492-792 Kinase_like
Protein kinase-like domain

RTYSYKELEEATGGFKEKLGRGAFGTVYKGVLASDAGRFVAVKKLDKVVQEGEKEFKTEVTVIGQTHHRNLVSLLGYCDQGVHRLLVYEYMNNGSLADLLFGISTPDWSQRLQIAFKIAKGLMYLHEECSTPIIHCDIKPENILLDEYLTPRISDFGLAKLLIRDHTRTLTTIRGTKGYVAPEWFRSKPITAKVDVYSYGVMLLEIISCRKSVHSQPENEEEAILADWAYDCYRGHRLDKLVKNDDEAGKDMGMLERVVMVAIWCIQEDPSLRPSMGMVILMLQGVVEVPVPPCPFPFSST

ProfileScan: PS50011
IPR000719
504-778 PROTEIN_KINASE_DOM
Protein kinase, catalytic domain

GGFKEKLGRGAFGTVYKGVLASDAGRFVAVKKLDKVVQEGEKEFKTEVTVIGQTHHRNLVSLLGYCDQGVHRLLVYEYMNNGSLADLLFGISTPDWSQRLQIAFKIAKGLMYLHEECSTPIIHCDIKPENILLDEYLTPRISDFGLAKLLIRDHTRTLTTIRGTKGYVAPEWFRSKPITAKVDVYSYGVMLLEIISCRKSVHSQPENEEEAILADWAYDCYRGHRLDKLVKNDDEAGKDMGMLERVVMVAIWCIQEDPSLRPSMGMVILMLQGVV

HMMPfam: PF00069
IPR017442
507-768 Pkinase,Ser-thr
Serine/threonine-protein kinase-like domain

KEKLGRGAFGTVYKGVLASDAGRFVAVKKLDKVVQEGEKEFKTEVTVIGQTHHRNLVSLLGYCDQGVHRLLVYEYMNNGSLADLLFGISTPDWSQRLQIAFKIAKGLMYLHEECSTPIIHCDIKPENILLDEYLTPRISDFGLAKLLIRDHTRTLTTIRGTKGYVAPEWFRSKPITAKVDVYSYGVMLLEIISCRKSVHSQPENEEEAILADWAYDCYRGHRLDKLVKNDDEAGKDMGMLERVVMVAIWCIQEDPSLRPSMG

PatternScan: PS00107
IPR017441
510-535 PROTEIN_KINASE_ATP
Protein kinase, ATP binding site

LGRGAFGTVYKGVLASDAGRFVAVKK

Gene3D: G3DSA:3.30.200.20
525-569 G3DSA:3.30.200.20

SDAGRFVAVKKLDKVVQEGEKEFKTEVTVIGQTHHRNLVSLLGYC

Gene3D: G3DSA:1.10.510.10
570-766 G3DSA:1.10.510.10

DQGVHRLLVYEYMNNGSLADLLFGISTPDWSQRLQIAFKIAKGLMYLHEECSTPIIHCDIKPENILLDEYLTPRISDFGLAKLLIRDHTRTLTTIRGTKGYVAPEWFRSKPITAKVDVYSYGVMLLEIISCRKSVHSQPENEEEAILADWAYDCYRGHRLDKLVKNDDEAGKDMGMLERVVMVAIWCIQEDPSLRPS

PatternScan: PS00108
IPR008271
624-636 PROTEIN_KINASE_ST
Serine/threonine-protein kinase, active site

IIHCDIKPENILL






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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