PRGDB00079621 (Cpp.2039)
| Cpp.2039 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 186788412 (EX274306) |
| Gene Class | Unknown |
| Domain Type | |
| Gene Species | Arabidopsis lyrata subsp. lyrata |
DNA Sequence
CCCCTAGCTTTTTGGTCCTGACGGCATCCCGGGATCGGCCATTACGGCCGGGGGATTGGTATTGTCTGTGCAAGTCCCAAGGCTCTGGAGGCATCCAAAACGGCAAAATCAGTCAGAGTTTTCTTTGACTGGGCTGATTACTTGAAATTCTATAAGTTAGGAACATATTGGCCCTATACCCCTTCTATCCAATTGCTTTATGGGTTGAGAGCAGCTCTGGACCTCATCTTTGAGGAAGGACTTGAGAATATCATCGAAAGGCATGCCCGTTTGGGAAAAGCAACAAGGCTGGCTGTGGAAGCATGGGGATTGAAGGACTGCACACAGAAGGAGGAATGGTACAGTAACACAGTTACTGCTGTGCTTGTTCCTCCTTATATCGATAGCAGTGAAATTGTTAGAAGAGCATGGAAGAGATACAATCTAAGCTTAGGTCTTGGTCTCAACAAAGTAGCTGGAAAAGTGTTCAGAAGGGGGCCATCTTGGCAACTTGAATGAGCTGCAACTGCTGGGTTGTCTTGCTGGTGTTGAGATGATATTGAAGGATGTTGGGTACCCCAGTTAAACTTGGAAGTGGGAGTTGGCAGCTGGCTTTGTGGGCATATTTTGCCAGAAATAACAATCCCTCTCCCATTTCCTTTCCCAGGGATTTAAATTGGGTAACTAATAATTCCACCCTTTTCCTCTTTGTAAAAAATTTAAATCAATTCTccccccccctcccccccATTCTTGGCTTTTGAACCCTCCTTGCGCCAAATTTTTCCTTGCCTTAAATACCTTAAAAACCCCCCTGGGATTCCCTTTATACTCTTTTCCCGAAAAAAAGCTGAAGGAAATACATCATCATAAACCaaaaaaataaataatacaaaaaagaaaaaaatttttaaaaaaaaaaaaaGGGGGGGCGCTTGGGGTCTTAAAAAACTTTCTCTAAACACCTTCTCTTGTGGGCGCGGGCGCGCCCCCAAGAGGGGAGAGAGCACGGGGGGGCACACGCTGGTCTCCCAGAGAGAACACCCGCGCAAAGAAACAGAGGCTGTTGTATTCTTCCTCCACaaaaaaaaaaaaCACCCCCGCGGGGGAGCCACCC
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Cpp.2039 | translated coding region predicted by ESTScan from UniGene Cpp.2039 | PLAFWSXRHPGIGHYGRGIGIVCASPKALEASKTAKSVRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIERHARLGKATRLAVEAWGLKDCTQKEEWYSNTVTAVLVPPYIDSSEIVRRAWKRYNLSLGLGLNKVAGKVFRRGPSWQLEXAATAGLSCWCXDDIEGCWVPQLNLEVGVGSWLCGHILPEITIPLPFPFPGI |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF53383 IPR015424
|
16-163 | PLP-dependent transferases Pyridoxal phosphate-dependent transferase, major d
|
GRGIGIVCASPKALEASKTAKSVRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIERHARLGKATRLAVEAWGLKDCTQKEEWYSNTVTAVLVPPYIDSSEIVRRAWKRYNLSLGLGLNKVAGKVFRRGPSWQ |
| Gene3D: G3DSA:3.40.640.10 IPR015421
|
16-67 | no description Pyridoxal phosphate-dependent transferase, major r
|
GRGIGIVCASPKALEASKTAKSVRVFFDWADYLKFYKLGTYWPYTPSIQLLY |
| HMMPfam: PF00266 IPR000192
|
17-134 | Aminotran_5 Aminotransferase, class V/Cysteine desulfurase
|
RGIGIVCASPKALEASKTAKSVRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIERHARLGKATRLAVEAWGLKDCTQKEEWYSNTVTAVLVPPYIDSSEIVR |
| HMMPanther: PTHR21152:SF7 | 18-157 | SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED | GIGIVCASPKALEASKTAKSVRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIERHARLGKATRLAVEAWGLKDCTQKEEWYSNTVTAVLVPPYIDSSEIVRRAWKRYNLSLGLGLNKVAGKVFR |
| HMMPanther: PTHR21152 | 18-157 | FAMILY NOT NAMED,AMINOTRANSFERASE CLASS V | GIGIVCASPKALEASKTAKSVRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIERHARLGKATRLAVEAWGLKDCTQKEEWYSNTVTAVLVPPYIDSSEIVRRAWKRYNLSLGLGLNKVAGKVFR |
| Gene3D: G3DSA:3.90.1150.10 IPR015422
|
68-157 | no description Pyridoxal phosphate-dependent transferase, major r
|
GLRAALDLIFEEGLENIIERHARLGKATRLAVEAWGLKDCTQKEEWYSNTVTAVLVPPYIDSSEIVRRAWKRYNLSLGLGLNKVAGKVFR |
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