PRGDB00079630 (Cpp.2559)

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Cpp.2559
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 186874397 (EX272003)
Gene Class Unknown
Domain Type Ser-Thr Kinase
Gene Species Arabidopsis lyrata subsp. lyrata

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1452284_5_D02_013 PY06 Carica papaya cDNA, mRNA sequence

DNA Sequence

CTTGGCCCCGGGGGATTCGGCCATTACGGCCGGGGTTGATCTGGGAGTTGAGGGTTTATATTGCTTTGGATGTGGCAAGGGGCTTGGAGTATCTCCATGATGGGGCAGTTCCACCTGTAATACACCGCGATATTAAATCTTCCAACATTCTGTTGGACCAATCCATGAGGGCCAGGGTAGCGGATTTTGGCCTTTCAAGAGAAGAAATGGTCGATAGTCATGCAGCTAATATCCGGGGAACTTTCGGATATCTTGATCCTGAGTATATATCAACAAGGACCTTCACTAAAAAAAGTGATGTTTATAGCTTCGGAGTGTTGCTCTTTGAACTTATAGCAGGCAGAAATCCTCAACAGGGTCTTATGGAATACGTAGAACTAGCAGCAATGAACACGGAAGGAAAAGTTGGATGGGAGGAAATTGTTGATTCCCGTTTGGATGGGAAGTTTGACATGGAAGATCTAAACGAAGTGGCGGCTCTTGCATACAAATGTGTGAACCGTGTCTCAAGAAAACGACCTGCCATGAGAGATATTGTGCAAGTGCTGTCAAGAATCATTAAATTAAGACACAGTAGGAAACATCACAAGAAGTCCCCTTCTGCGACAGATGAGGTTTCAATTGATCTTGAACAACCAGAAACAAAGATCCAAATCAGTCAACACCGAAGAGATGAATCCATTGACAGCAGCATGACTGACGCCTGTGAAGTTTAGAGGATGGATTCTAGACATGTGAAGCTatttttgtctggttccttggttttgattttttgtgtttgtGAACTATATAGGCCTCTTCAAGAAACTAACAGAGCTCTATAGTTCATCAGCAATTTCTGATTGTTCAAGTGAGTTACGCTTAAGAGGGGTGTTTTCCATAATGTAACATACATAGGTCACTTCCAATTTTGCTTCTTTTTATTTCTGGGCCCTTACATCTGTTTGGTGAAATGGCAGACCCCGATTTGTATATTATACTCTAGAATTGAACGAAGAATTAATCTCTGATATGATAAATATAGAGCCGCTCgccctcgagagctttctagaccattcgtttggcgcgcggac


Protein sequences

Name Description Sequence
Cpp.2559 translated coding region predicted by ESTScan from UniGene Cpp.2559

XWPRGIRPLRPGLIWELRVYIALDVARGLEYLHDGAVPPVIHRDIKSSNILLDQSMRARVADFGLSREEMVDSHAANIRGTFGYLDPEYISTRTFTKKSDVYSFGVLLFELIAGRNPQQGLMEYVELAAMNTEGKVGWEEIVDSRLDGKFDMEDLNEVAALAYKCVNRVSRKRPAMRDIVQVLSRIIKLRHSRKHHKKSPSATDEVSIDLEQPETKIQISQHRRDESIDSSMTDACEV

Domains

Domain Start-End Description Sequence

ProfileScan: PS50011
IPR000719
1-187 PROTEIN_KINASE_DOM
Protein kinase, catalytic domain

XWPRGIRPLRPGLIWELRVYIALDVARGLEYLHDGAVPPVIHRDIKSSNILLDQSMRARVADFGLSREEMVDSHAANIRGTFGYLDPEYISTRTFTKKSDVYSFGVLLFELIAGRNPQQGLMEYVELAAMNTEGKVGWEEIVDSRLDGKFDMEDLNEVAALAYKCVNRVSRKRPAMRDIVQVLSRII

HMMSmart: SM00219
IPR020635
4-183 Tyrosine kinase, catalytic domain
Tyrosine-protein kinase, catalytic domain

RGIRPLRPGLIWELRVYIALDVARGLEYLHDGAVPPVIHRDIKSSNILLDQSMRARVADFGLSREEMVDSHAANIRGTFGYLDPEYISTRTFTKKSDVYSFGVLLFELIAGRNPQQGLMEYVELAAMNTEGKVGWEEIVDSRLDGKFDMEDLNEVAALAYKCVNRVSRKRPAMRDIVQVL

HMMSmart: SM00220
IPR002290
4-187 Serine/Threonine protein kinases, catalytic
Serine/threonine- / dual-specificity protein kinas

RGIRPLRPGLIWELRVYIALDVARGLEYLHDGAVPPVIHRDIKSSNILLDQSMRARVADFGLSREEMVDSHAANIRGTFGYLDPEYISTRTFTKKSDVYSFGVLLFELIAGRNPQQGLMEYVELAAMNTEGKVGWEEIVDSRLDGKFDMEDLNEVAALAYKCVNRVSRKRPAMRDIVQVLSRII

Gene3D: G3DSA:1.10.510.10
12-213 no description

GLIWELRVYIALDVARGLEYLHDGAVPPVIHRDIKSSNILLDQSMRARVADFGLSREEMVDSHAANIRGTFGYLDPEYISTRTFTKKSDVYSFGVLLFELIAGRNPQQGLMEYVELAAMNTEGKVGWEEIVDSRLDGKFDMEDLNEVAALAYKCVNRVSRKRPAMRDIVQVLSRIIKLRHSRKHHKKSPSATDEVSIDLEQP

HMMPanther: PTHR24420:SF419
13-234 SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED

LIWELRVYIALDVARGLEYLHDGAVPPVIHRDIKSSNILLDQSMRARVADFGLSREEMVDSHAANIRGTFGYLDPEYISTRTFTKKSDVYSFGVLLFELIAGRNPQQGLMEYVELAAMNTEGKVGWEEIVDSRLDGKFDMEDLNEVAALAYKCVNRVSRKRPAMRDIVQVLSRIIKLRHSRKHHKKSPSATDEVSIDLEQPETKIQISQHRRDESIDSSMTD

HMMPanther: PTHR24420
13-234 FAMILY NOT NAMED,FAMILY NOT NAMED

LIWELRVYIALDVARGLEYLHDGAVPPVIHRDIKSSNILLDQSMRARVADFGLSREEMVDSHAANIRGTFGYLDPEYISTRTFTKKSDVYSFGVLLFELIAGRNPQQGLMEYVELAAMNTEGKVGWEEIVDSRLDGKFDMEDLNEVAALAYKCVNRVSRKRPAMRDIVQVLSRIIKLRHSRKHHKKSPSATDEVSIDLEQPETKIQISQHRRDESIDSSMTD

superfamily: SSF56112
IPR011009
15-214 Protein kinase-like (PK-like)
Protein kinase-like domain

WELRVYIALDVARGLEYLHDGAVPPVIHRDIKSSNILLDQSMRARVADFGLSREEMVDSHAANIRGTFGYLDPEYISTRTFTKKSDVYSFGVLLFELIAGRNPQQGLMEYVELAAMNTEGKVGWEEIVDSRLDGKFDMEDLNEVAALAYKCVNRVSRKRPAMRDIVQVLSRIIKLRHSRKHHKKSPSATDEVSIDLEQPE

HMMPfam: PF00069
IPR017442
19-181 Pkinase,Ser-thr
Serine/threonine-protein kinase-like domain

VYIALDVARGLEYLHDGAVPPVIHRDIKSSNILLDQSMRARVADFGLSREEMVDSHAANIRGTFGYLDPEYISTRTFTKKSDVYSFGVLLFELIAGRNPQQGLMEYVELAAMNTEGKVGWEEIVDSRLDGKFDMEDLNEVAALAYKCVNRVSRKRPAMRDIVQ

PatternScan: PS00108
IPR008271
40-52 PROTEIN_KINASE_ST
Serine/threonine-protein kinase, active site

VIHRDIKSSNILL

Seg: seg
190-199 seg

RHSRKHHKKS






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Analyses

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