PRGDB00079749 (Fpr.1080)
| Fpr.1080 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 237587386 (GO861064) |
| Gene Class | Unknown |
| Domain Type | LRR |
| Gene Species | Capsella grandiflora |
DNA Sequence
AACTCAATTAGAGCAAGAATAGAGACATGGCTCAAGTTCCTGCAGCCAAATCTTTGATTGCTCCTTCTCACCATGAACTCTTTCTTCTCTGCACCCTCATATTTTTGTACTCCAACAGCATAATATTCTCATCAGCACAAGCTACCAACACAACCGAGGATGACCGGCAAGCCCTTCTCTGCTTCAAATCTAGCATCTCCAGTGATCCTACTGGTGTTCTTGGATCATGGCGCAACGATTCCCTCAACTTCTGTGGCTGGCAGGGGGTCACCTGCAGCATGACCCTCGCAATCCGTGTCGTGTCCATCCAATTCAGGTCTGCGCTGCTCACAGGAACACTATCCAGTTGCATGTCAGGCCTTACTTCTCTAGTTCAGATGGATCTTCGAAACAATAAATTGTCTGGAAGCATACCTGATGAGATAGGTGAGCTTCCTAGCCTACAAACTTTGATGCTTGCCGACAACGGGCTTGCAGGTAACATCCCTCTGTCATTAGGTACAGCTGCATCTCTTAGATATGTCAACCTTGCAAACAATTCTCTTAGCGGAGTTATCCCTGATTCCTTATCAAACAGTTCGTTACTAAGTGAGCTAATCCTCTCACGTAACAACTTAGCTGGGGAGATCCCGGCTAATCTGTTCAACTCATCGAAACTTGTCGCTGTTGATCTCCAGTGGAATTTTCTCTCAGGAGAAATCCCACATTTCCAGGAGATGGATGCTCTGCAATTTCTTAACCTTACAGGGAATTTACTTTCTGGTACTATACCAGCATCTTTGGTAAATGTTTCATCCTTGCGTTGTCTCCTGCTAGCACAAAACAACTTGACAGGATCAATCCCAGAAACTTTAGGTCAAATTCCAAGCCTAACAATTCTAGATCTAAGTTACAACGGATTCTCAGGTATGTCCCAACCACACTGTATAATGTCTCGGCACTCACACTCTTTAGCTTAGGGCTTCAACAATTTTATTGGACAGATACCTTCTGAAATTGGCCACTCGCTTCCGATCTCAACATGGTAATGGGTGGCAACAAATT
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Fpr.1080 | translated coding region predicted by ESTScan from UniGene Fpr.1080 | MAQVPAAKSLIAPSHHELFLLCTLIFLYSNSIIFSSAQATNTTEDDRQALLCFKSSISSDPTGVLGSWRNDSLNFCGWQGVTCSMTLAIRVVSIQFRSALLTGTLSSCMSGLTSLVQMDLRNNKLSGSIPDEIGELPSLQTLMLADNGLAGNIPLSLGTAASLRYVNLANNSLSGVIPDSLSNSSLLSELILSRNNLAGEIPANLFNSSKLVAVDLQWNFLSGEIPHFQEMDALQFLNLTGNLLSGTIPASLVNVSSLRCLLLAQNNLTGSIPETLGQIPSLTILDLSYNGFSGMSQPHCIMSRHSHSLAXGFNNFIGQIPSEIGHSLPISTWXWVATNX |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR24420:SF474 | 5-325 | SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED | PAAKSLIAPSHHELFLLCTLIFLYSNSIIFSSAQATNTTEDDRQALLCFKSSISSDPTGVLGSWRNDSLNFCGWQGVTCSMTLAIRVVSIQFRSALLTGTLSSCMSGLTSLVQMDLRNNKLSGSIPDEIGELPSLQTLMLADNGLAGNIPLSLGTAASLRYVNLANNSLSGVIPDSLSNSSLLSELILSRNNLAGEIPANLFNSSKLVAVDLQWNFLSGEIPHFQEMDALQFLNLTGNLLSGTIPASLVNVSSLRCLLLAQNNLTGSIPETLGQIPSLTILDLSYNGFSGMSQPHCIMSRHSHSLAXGFNNFIGQIPSEIG |
| HMMPanther: PTHR24420 | 5-325 | FAMILY NOT NAMED,FAMILY NOT NAMED | PAAKSLIAPSHHELFLLCTLIFLYSNSIIFSSAQATNTTEDDRQALLCFKSSISSDPTGVLGSWRNDSLNFCGWQGVTCSMTLAIRVVSIQFRSALLTGTLSSCMSGLTSLVQMDLRNNKLSGSIPDEIGELPSLQTLMLADNGLAGNIPLSLGTAASLRYVNLANNSLSGVIPDSLSNSSLLSELILSRNNLAGEIPANLFNSSKLVAVDLQWNFLSGEIPHFQEMDALQFLNLTGNLLSGTIPASLVNVSSLRCLLLAQNNLTGSIPETLGQIPSLTILDLSYNGFSGMSQPHCIMSRHSHSLAXGFNNFIGQIPSEIG |
| superfamily: SSF52058 | 40-321 | L domain-like,LRR | TNTTEDDRQALLCFKSSISSDPTGVLGSWRNDSLNFCGWQGVTCSMTLAIRVVSIQFRSALLTGTLSSCMSGLTSLVQMDLRNNKLSGSIPDEIGELPSLQTLMLADNGLAGNIPLSLGTAASLRYVNLANNSLSGVIPDSLSNSSLLSELILSRNNLAGEIPANLFNSSKLVAVDLQWNFLSGEIPHFQEMDALQFLNLTGNLLSGTIPASLVNVSSLRCLLLAQNNLTGSIPETLGQIPSLTILDLSYNGFSGMSQPHCIMSRHSHSLAXGFNNFIGQIP |
| Gene3D: G3DSA:3.80.10.10 | 42-218 | no description | TTEDDRQALLCFKSSISSDPTGVLGSWRNDSLNFCGWQGVTCSMTLAIRVVSIQFRSALLTGTLSSCMSGLTSLVQMDLRNNKLSGSIPDEIGELPSLQTLMLADNGLAGNIPLSLGTAASLRYVNLANNSLSGVIPDSLSNSSLLSELILSRNNLAGEIPANLFNSSKLVAVDLQW |
| HMMPfam: PF08263 IPR013210
|
44-84 | LRRNT_2 Leucine-rich repeat-containing N-terminal, type 2
|
EDDRQALLCFKSSISSDPTGVLGSWRNDSLNFCGWQGVTCS |
| HMMPfam: PF00560 IPR001611
|
114-135 | LRR_1 Leucine-rich repeat
|
SLVQMDLRNNKLSGSIPDEIGE |
| HMMPfam: PF13855 | 162-219 | LRR_8,Leucine rich repeat | SLRYVNLANNSLSGVIPDSLSNSSLLSELILSRNNLAGEIPANLFNSSKLVAVDLQWN |
| Seg: seg | 180-197 | seg | SLSNSSLLSELILSRNNL |
| Gene3D: G3DSA:3.80.10.10 | 219-326 | no description | NFLSGEIPHFQEMDALQFLNLTGNLLSGTIPASLVNVSSLRCLLLAQNNLTGSIPETLGQIPSLTILDLSYNGFSGMSQPHCIMSRHSHSLAXGFNNFIGQIPSEIGH |
| HMMPfam: PF13855 | 234-291 | LRR_8,Leucine rich repeat | LQFLNLTGNLLSGTIPASLVNVSSLRCLLLAQNNLTGSIPETLGQIPSLTILDLSYNG |
List of Contributions
There has not been any contribution yet.
