PRGDB00079751 (Fpr.1275)

Fpr.1275
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	237593359 (GO871429)
Gene Class	Unknown
Domain Type	Ser-Thr Kinase
Gene Species	Capsella grandiflora
	Comment?

CLS_CLiFpEfSpn_61a1_2_e19cLibkit5LD_C10 CLS_CLiFpEfSPn_plant Festuca pratensis cDNA clone 61e19 5', mRNA sequence

DNA Sequence

ATCGGAAGGGAGGGATGCTGAGGTGTAAGAGGAAGCTTGCTGATGGACAGTTTGTGGCAGTGAAGAGACTAAAAAAGGTGGTAAAAAGAGGAAGGATTAGCGACTCTATTGAGCTTGGAATTATAGAATGTTAACACCAAATGCGGAAGCTCTGGGGTTAGTGTGGAAGGTGGCTTGACTTGGTTCTTAATTCTACACTGGAAGCTTGGCTTCTGTTCTCATGGTGCAAAGGGAGCCCTCAGGTGGAAGGCCCGGTTAGTATTGCACTTGGAATCGCTGAAGGGCTATTTTATCTACATGAAGGTTGTCATCGGCACATCATTCACAGAGACATCAAGGCTTCAATATTCTTTTAACTGAAGAGTATCAACCTCAGATTTCAGACTTTGGCCTTGCGAAATGGCTTCCTGATAAATGCACCCATCAGGTTGTGTTCCCCATTGAAGGCACATTTGGGTATATGGCTCCGAGTACTTCATGCATGGGATCATAAATGAGAAGACCGACGTATTTGCATATGGAGTATTGCTTCTTGAACTAGTGACTGGGCGGAAAGCGGTGGACTCTTCAGACAAAGCCTAGTGATATGGGCAAAACCGCTGCTCGAATCGAACAACATGAAAGGACTAGTGGATCCTTCTCTTGATGCTGGATATGACCCAGAAGAGATGGCACTCACCCTAGCAGTGGCATCGATGTGCATTCACCACAGCTCAACTTGCGGCCTAGCATGAGATCGGTGGTCCGTTTCTTGAAGGGAGACAGAGAATCACTTGAACTGATGGGGAAGCCTGAAACCACGAAGCCCCCTATGTTTGACTCCTGTGATTCGAAGATTACACTCGCACGGTTACCTCATGATCTGGACAGCACAACAGCTGCCTTGGAGCGTAATCTAGTTGGGCTTGGACGATTTTGTCTTTTTGTACTTGTACGCTACTTGCGATCTCCTGCTTTCAGAGATGCTCAAGATGTATGGATAGAGTGAGGATAAATACTTCCTGGTGATGATTTAGTGTCGGTTGGCTGCAAAAAGAAAAAATAAGAAAAAAAAAAAAAAAAAAA

Protein sequences

Name	Description	Sequence
Fpr.1275	translated coding region predicted by ESTScan from UniGene Fpr.1275	XRKGGMLRCKRKLADGQFVAVKRLKKVVKRGRISDSIELGIKNVNTKCGSSGVSVEGGLTWFLILHWKLGFCSHGAKGALRWKARLVLHLESLKGYFIYMKVVIGTSFTENQGFNILLTEEYQPQISDFGLAKWLPDKCTHQVVFPIEGTFGYMAPEYFMHGIINEKTDVFAYGVLLLELVTXAESGGLFRQSLVIWAKPLLESNNMKGLVDPSLDAGYDPEEMALTLAVAIDVHSPQLNLRPSMRSVVRFLKGDRESLELMGKPETTKPPMFDSCDSKITLARLPHDLDSTTAALERNLVGLGRFCLFVLVRYLRSPAFRDAQDVWIE

Domains

Domain	Start-End	Description	Sequence
ProfileScan: PS50011 IPR000719	1-259	PROTEIN_KINASE_DOM Protein kinase, catalytic domain	XRKGGMLRCKRKLADGQFVAVKRLKKVVKRGRISDSIELGIKNVNTKCGSSGVSVEGGLTWFLILHWKLGFCSHGAKGALRWKARLVLHLESLKGYFIYMKVVIGTSFTENQGFNILLTEEYQPQISDFGLAKWLPDKCTHQVVFPIEGTFGYMAPEYFMHGIINEKTDVFAYGVLLLELVTXAESGGLFRQSLVIWAKPLLESNNMKGLVDPSLDAGYDPEEMALTLAVAIDVHSPQLNLRPSMRSVVRFLKGDRESL
HMMSmart: SM00220 IPR002290	7-301	Serine/Threonine protein kinases, catalytic Serine/threonine- / dual-specificity protein kinas	LRCKRKLADGQFVAVKRLKKVVKRGRISDSIELGIKNVNTKCGSSGVSVEGGLTWFLILHWKLGFCSHGAKGALRWKARLVLHLESLKGYFIYMKVVIGTSFTENQGFNILLTEEYQPQISDFGLAKWLPDKCTHQVVFPIEGTFGYMAPEYFMHGIINEKTDVFAYGVLLLELVTXAESGGLFRQSLVIWAKPLLESNNMKGLVDPSLDAGYDPEEMALTLAVAIDVHSPQLNLRPSMRSVVRFLKGDRESLELMGKPETTKPPMFDSCDSKITLARLPHDLDSTTAALERNLV
HMMSmart: SM00219 IPR020635	7-252	Tyrosine kinase, catalytic domain Tyrosine-protein kinase, catalytic domain	LRCKRKLADGQFVAVKRLKKVVKRGRISDSIELGIKNVNTKCGSSGVSVEGGLTWFLILHWKLGFCSHGAKGALRWKARLVLHLESLKGYFIYMKVVIGTSFTENQGFNILLTEEYQPQISDFGLAKWLPDKCTHQVVFPIEGTFGYMAPEYFMHGIINEKTDVFAYGVLLLELVTXAESGGLFRQSLVIWAKPLLESNNMKGLVDPSLDAGYDPEEMALTLAVAIDVHSPQLNLRPSMRSVVRFL
Seg: seg	19-32	seg	VAVKRLKKVVKRGR
superfamily: SSF56112 IPR011009	115-298	Protein kinase-like (PK-like) Protein kinase-like domain	NILLTEEYQPQISDFGLAKWLPDKCTHQVVFPIEGTFGYMAPEYFMHGIINEKTDVFAYGVLLLELVTXAESGGLFRQSLVIWAKPLLESNNMKGLVDPSLDAGYDPEEMALTLAVAIDVHSPQLNLRPSMRSVVRFLKGDRESLELMGKPETTKPPMFDSCDSKITLARLPHDLDSTTAALER
HMMPanther: PTHR24420:SF794	115-324	SUBFAMILY NOT NAMED	NILLTEEYQPQISDFGLAKWLPDKCTHQVVFPIEGTFGYMAPEYFMHGIINEKTDVFAYGVLLLELVTXAESGGLFRQSLVIWAKPLLESNNMKGLVDPSLDAGYDPEEMALTLAVAIDVHSPQLNLRPSMRSVVRFLKGDRESLELMGKPETTKPPMFDSCDSKITLARLPHDLDSTTAALERNLVGLGRFCLFVLVRYLRSPAFRDAQ
HMMPanther: PTHR24420	115-324	FAMILY NOT NAMED,FAMILY NOT NAMED	NILLTEEYQPQISDFGLAKWLPDKCTHQVVFPIEGTFGYMAPEYFMHGIINEKTDVFAYGVLLLELVTXAESGGLFRQSLVIWAKPLLESNNMKGLVDPSLDAGYDPEEMALTLAVAIDVHSPQLNLRPSMRSVVRFLKGDRESLELMGKPETTKPPMFDSCDSKITLARLPHDLDSTTAALERNLVGLGRFCLFVLVRYLRSPAFRDAQ
HMMPfam: PF00069 IPR017442	115-183	Pkinase,Ser-thr Serine/threonine-protein kinase-like domain	NILLTEEYQPQISDFGLAKWLPDKCTHQVVFPIEGTFGYMAPEYFMHGIINEKTDVFAYGVLLLELVTX
Gene3D: G3DSA:1.10.510.10	115-270	no description	NILLTEEYQPQISDFGLAKWLPDKCTHQVVFPIEGTFGYMAPEYFMHGIINEKTDVFAYGVLLLELVTXAESGGLFRQSLVIWAKPLLESNNMKGLVDPSLDAGYDPEEMALTLAVAIDVHSPQLNLRPSMRSVVRFLKGDRESLELMGKPETTKP

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Analyses

Blast

Blast matches against Reference R-Genes. Show