PRGDB00079934 (Les.5672)
| Les.5672 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 47105778 (BT014363) |
| Gene Class | Unknown |
| Domain Type | Ser-Thr Kinase |
| Gene Species | Solanum lycopersicum |
DNA Sequence
GAGTTATAACAAGGTTCAAAAACTCTTTACTTTCATCTAGTTGTTTGGCGAAGAAATGACTGGTGAGAGATTAAGCTGGAAATCAATGATTCCATGTTGTTACAAAGTGGATGATGAGTTTGTAAAATCTAAGAAACAGGTGAAGAAACAGACTTCATTCCAGAGGCTAACACTTTTAGACTTTGATGATCCAAGTTCACCGTTATCGGCTGATGAACTCTCTAATTCATTCATTGGATCAAGCCTAATAAACTTTACATTTACTGATCTTAGAGAGGTAACACATAATTTTTCTTCTGCTAATTTTCTTGGTGAAGGAGGATTTGGACCTGTGTACAAGGGATTCGTCGATGACAAAGTTAGACCTGGATTGAAAGCTCAGGTTGTGGCTGTTAAGGTGCTGGATACAGATGGTCTACAAGGTCACAAGGAATGGCTGACAGAGATAATATTCCTGGGGCAATTGAGGCATCCACATCTGGTAAAATTGATTGGATACTGCTGGGAGGATGATAATAGACTTTTAGTCTATGAATTCTTGCCAAGAGGAAGCTTGGAGAATCAACTCTTTGGAAAATTTTCGATCACATTGTCGTGGTCCATAAGGATGAAGATAGCATTGGGAGCAGCAAAAGGTCTCGCGTTCCTTCATGAAGGAGACAAACCAGTCATATACAGGGACTTTAAGGCCTCAAACATCTTAATAGATTCAGATTACACTGCTAAACTTTCTGATTTTGGACTCGCAAAGGATGGGCCGGAAGGGGATGATACTCATGTTTCCACACGAATAATGGGAACACATGGCTATGCAGCCCCTGAATACATAATGACAGGTCATTTGACGACAATGAGTGATGTATACAGCTTTGGAGTAGTTCTGTTGGAACTGCTAACTGGTAAAAGGTCTTTGGATAAGTCGAGAAGAGAAGGAGAACATAATTTAGTTGAATGGTTAAGGCCTTATCTAAGAGATCCAAAGAGAATTGCTCGTGTGATGGATCGAAGACTTGAAGATGAATACCCTATGAAAGGGGCACAAACTGCAGCATTAGTAGCATACAAATGTTTAAATCACTATCCTAAGCCTAGGCCTACAATGGATGATGTAGTCAAGATTCTCGAAACTCTTCAAGATGAAAACAACAACATCGACACTTCAATCAGTGATCCAATGATAACGATGACATTGAGTAGTGATTTTAGCAGTGGAAGTGAGCAAAATGAGGATACTGCAGCACCAGAAAGGAATAGAAATAACAAGTACTTGAATAATGAGAGAAATCAAGGTTATGGCTGGAAACATCGACTCAATAGACAACGAATGGTGGCATCATACTCAGATACAGCTCTCTATCGAAGACATTGACATGGTAAAGGCATTGCAGCGAACAATATTAAGTAATATTGCACTTCAATTTATCGATGCTACTAAATATTAATGCAGTAAGCAGAGTATACTGAAGATATAATTTAAACAGCATACTAGTTTCCTGTTAAGGTATAAAAATGTAACATGATTTTCTCTTCTTTTTTCCTCTTCAGTTGTTAGATATGAAATTGAAAAAAGAAAACCAAGACTAAGCCAATTCTGTTTaaaaaaaaaaaaaaaaa
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Les.5672 | translated coding region predicted by ESTScan from UniGene Les.5672 | MTGERLSWKSMIPCCYKVDDEFVKSKKQVKKQTSFQRLTLLDFDDPSSPLSADELSNSFIGSSLINFTFTDLREVTHNFSSANFLGEGGFGPVYKGFVDDKVRPGLKAQVVAVKVLDTDGLQGHKEWLTEIIFLGQLRHPHLVKLIGYCWEDDNRLLVYEFLPRGSLENQLFGKFSITLSWSIRMKIALGAAKGLAFLHEGDKPVIYRDFKASNILIDSDYTAKLSDFGLAKDGPEGDDTHVSTRIMGTHGYAAPEYIMTGHLTTMSDVYSFGVVLLELLTGKRSLDKSRREGEHNLVEWLRPYLRDPKRIARVMDRRLEDEYPMKGAQTAALVAYKCLNHYPKPRPTMDDVVKILETLQDENNNIDTSISDPMITMTLSSDFSSGSEQNEDTAAPERNRNNKYLNNGEIKVMAGNIDSIDNEWWHHTQIQLSIEDIDMVKALQRTILSNIALQFIDATKY |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| Seg: seg | 22-35 | seg | FVKSKKQVKKQTSF |
| superfamily: SSF56112 IPR011009
|
49-364 | Protein kinase-like (PK-like) Protein kinase-like domain
|
PLSADELSNSFIGSSLINFTFTDLREVTHNFSSANFLGEGGFGPVYKGFVDDKVRPGLKAQVVAVKVLDTDGLQGHKEWLTEIIFLGQLRHPHLVKLIGYCWEDDNRLLVYEFLPRGSLENQLFGKFSITLSWSIRMKIALGAAKGLAFLHEGDKPVIYRDFKASNILIDSDYTAKLSDFGLAKDGPEGDDTHVSTRIMGTHGYAAPEYIMTGHLTTMSDVYSFGVVLLELLTGKRSLDKSRREGEHNLVEWLRPYLRDPKRIARVMDRRLEDEYPMKGAQTAALVAYKCLNHYPKPRPTMDDVVKILETLQDENN |
| HMMPanther: PTHR24420:SF661 | 61-427 | SUBFAMILY NOT NAMED | GSSLINFTFTDLREVTHNFSSANFLGEGGFGPVYKGFVDDKVRPGLKAQVVAVKVLDTDGLQGHKEWLTEIIFLGQLRHPHLVKLIGYCWEDDNRLLVYEFLPRGSLENQLFGKFSITLSWSIRMKIALGAAKGLAFLHEGDKPVIYRDFKASNILIDSDYTAKLSDFGLAKDGPEGDDTHVSTRIMGTHGYAAPEYIMTGHLTTMSDVYSFGVVLLELLTGKRSLDKSRREGEHNLVEWLRPYLRDPKRIARVMDRRLEDEYPMKGAQTAALVAYKCLNHYPKPRPTMDDVVKILETLQDENNNIDTSISDPMITMTLSSDFSSGSEQNEDTAAPERNRNNKYLNNGEIKVMAGNIDSIDNEWWHH |
| HMMPanther: PTHR24420 | 61-427 | FAMILY NOT NAMED,FAMILY NOT NAMED | GSSLINFTFTDLREVTHNFSSANFLGEGGFGPVYKGFVDDKVRPGLKAQVVAVKVLDTDGLQGHKEWLTEIIFLGQLRHPHLVKLIGYCWEDDNRLLVYEFLPRGSLENQLFGKFSITLSWSIRMKIALGAAKGLAFLHEGDKPVIYRDFKASNILIDSDYTAKLSDFGLAKDGPEGDDTHVSTRIMGTHGYAAPEYIMTGHLTTMSDVYSFGVVLLELLTGKRSLDKSRREGEHNLVEWLRPYLRDPKRIARVMDRRLEDEYPMKGAQTAALVAYKCLNHYPKPRPTMDDVVKILETLQDENNNIDTSISDPMITMTLSSDFSSGSEQNEDTAAPERNRNNKYLNNGEIKVMAGNIDSIDNEWWHH |
| Gene3D: G3DSA:3.30.200.20 | 63-147 | no description | SLINFTFTDLREVTHNFSSANFLGEGGFGPVYKGFVDDKVRPGLKAQVVAVKVLDTDGLQGHKEWLTEIIFLGQLRHPHLVKLIG |
| ProfileScan: PS50011 IPR000719
|
79-359 | PROTEIN_KINASE_DOM Protein kinase, catalytic domain
|
FSSANFLGEGGFGPVYKGFVDDKVRPGLKAQVVAVKVLDTDGLQGHKEWLTEIIFLGQLRHPHLVKLIGYCWEDDNRLLVYEFLPRGSLENQLFGKFSITLSWSIRMKIALGAAKGLAFLHEGDKPVIYRDFKASNILIDSDYTAKLSDFGLAKDGPEGDDTHVSTRIMGTHGYAAPEYIMTGHLTTMSDVYSFGVVLLELLTGKRSLDKSRREGEHNLVEWLRPYLRDPKRIARVMDRRLEDEYPMKGAQTAALVAYKCLNHYPKPRPTMDDVVKILETL |
| HMMSmart: SM00219 IPR020635
|
79-356 | Tyrosine kinase, catalytic domain Tyrosine-protein kinase, catalytic domain
|
FSSANFLGEGGFGPVYKGFVDDKVRPGLKAQVVAVKVLDTDGLQGHKEWLTEIIFLGQLRHPHLVKLIGYCWEDDNRLLVYEFLPRGSLENQLFGKFSITLSWSIRMKIALGAAKGLAFLHEGDKPVIYRDFKASNILIDSDYTAKLSDFGLAKDGPEGDDTHVSTRIMGTHGYAAPEYIMTGHLTTMSDVYSFGVVLLELLTGKRSLDKSRREGEHNLVEWLRPYLRDPKRIARVMDRRLEDEYPMKGAQTAALVAYKCLNHYPKPRPTMDDVVKIL |
| HMMSmart: SM00220 IPR002290
|
79-359 | Serine/Threonine protein kinases, catalytic Serine/threonine- / dual-specificity protein kinas
|
FSSANFLGEGGFGPVYKGFVDDKVRPGLKAQVVAVKVLDTDGLQGHKEWLTEIIFLGQLRHPHLVKLIGYCWEDDNRLLVYEFLPRGSLENQLFGKFSITLSWSIRMKIALGAAKGLAFLHEGDKPVIYRDFKASNILIDSDYTAKLSDFGLAKDGPEGDDTHVSTRIMGTHGYAAPEYIMTGHLTTMSDVYSFGVVLLELLTGKRSLDKSRREGEHNLVEWLRPYLRDPKRIARVMDRRLEDEYPMKGAQTAALVAYKCLNHYPKPRPTMDDVVKILETL |
| HMMPfam: PF07714 IPR001245
|
83-356 | Pkinase_Tyr Serine-threonine/tyrosine-protein kinase
|
NFLGEGGFGPVYKGFVDDKVRPGLKAQVVAVKVLDTDGLQGHKEWLTEIIFLGQLRHPHLVKLIGYCWEDDNRLLVYEFLPRGSLENQLFGKFSITLSWSIRMKIALGAAKGLAFLHEGDKPVIYRDFKASNILIDSDYTAKLSDFGLAKDGPEGDDTHVSTRIMGTHGYAAPEYIMTGHLTTMSDVYSFGVVLLELLTGKRSLDKSRREGEHNLVEWLRPYLRDPKRIARVMDRRLEDEYPMKGAQTAALVAYKCLNHYPKPRPTMDDVVKIL |
| Gene3D: G3DSA:1.10.510.10 | 148-367 | no description | YCWEDDNRLLVYEFLPRGSLENQLFGKFSITLSWSIRMKIALGAAKGLAFLHEGDKPVIYRDFKASNILIDSDYTAKLSDFGLAKDGPEGDDTHVSTRIMGTHGYAAPEYIMTGHLTTMSDVYSFGVVLLELLTGKRSLDKSRREGEHNLVEWLRPYLRDPKRIARVMDRRLEDEYPMKGAQTAALVAYKCLNHYPKPRPTMDDVVKILETLQDENNNID |
| PatternScan: PS00108 IPR008271
|
205-217 | PROTEIN_KINASE_ST Serine/threonine-protein kinase, active site
|
VIYRDFKASNILI |
List of Contributions
There has not been any contribution yet.
