PRGDB00080689 (Ptc.424)
| Ptc.424 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 219119846 (XM_002180639) |
| Gene Class | RLP |
| Domain Type | Ser-Thr Kinase, LRR |
| Gene Species | Dimocarpus longan |
DNA Sequence
AGGAGTGTAGAGAAACGAACGAAAACACAAGTACTTCCGAGAGTACTTCCGAGACCCAACGTTAGACAGGCAGGCAGGCACGCACCTTTCCTCTTCCTTTCTCCGAACACTTCCCGTTCGTACATCCATTTCCGTTTGTTCGATACTCGTACAATGAATCGTTCGTACGGAATGGCAGCTCACGGAGCGGATGGTCCGGACAGCGACGACGATGACACCATGTCGGATGTGTTCACCATGGATGGGGACTACACGTTGTCCTCCGGGATGCCGCCGCCGCCTGCCACGGAGCGCAGCCATACGCACATTCCCTTGACCGTCGAGTCGCCCTCCGCCACGCGTTCGCAAGGACTGAATCCTTACTCCCCCCGGACGGACGCCGCAGCCTACGACGTGTCGACGGATGACGGCTCCGTGTCGGGCATCGAATCCATGTCGGGCTTAATGACGACCGACGGATCCTACTTTCAAAACGATACCGTCGTGCACGACGACGAAATGTCCTTCCAAGCCAAGGTGCAAGCCGAAACGAACAAGATTCTGAGTGAGTACGACATGGAGGAAGACTTGAATCGATCCGGTGATTCCAAGCTCGGACGCTACCATAACCGTACTTCCGTGTCGGCTCCACGACAAGCCGCGCCCCCCATGACACCCACGAGCTCGATGGACGACGACAGCGACAGCGAGGCCGCACGAGCGAGGCCCGACAACCAGACGCGACACAGCAAAAAGGACCCAAGCTCCGCCGTTGGCCCCCCTCCCGTCTCTTCCAATGGAGCCAGGGGCAGCTCCGTGCGCCATTCCGTGCGATCCCTACGCAAGCAATCCAACAACAAACCCGAGGCGCCAACGAAACCGGCCGTCTACGACTTGTCGACGCCGGAAACATCCCCGACTAATCGTAAAGCGCCGGTTACGCCACAGACCAAGACCCCCCAGCGGTCCAACACCACGGCCCGGCCCCCCAACATGATCGTTGTGGGATCCTCGACTACTACCGAGTCTTCGGAAAAGAACACCCGAGCCGCCGCCGCAATCGGAGCGTCAGCCGCACCCACCAGGAAAGGGTGGTTAGGAAGTCGCTTGAGCTTCGTTATCATCGTGTTGTCGATTATTCTACTAACGGCAATTTGCGTTGCCGTGGGAGCCTTGGTCGCCGCTGGCAATCGCAATAGTGATTCTTCCAGCGCATCTTCGTCAGAAGGGGGCTCGAGCAACGAAATAGGAGCCCCGCCGGTCGATTTCCTTCCCTTCTTGCCGCCGACGACGGCGCCGATAGCTTCCGAAATCCCTTCCACCGGATCTCCGACACCGGAGCCGAGCGCGTGGAATCGTGATGTGTGTGGGATCGATGATCCCGACAAGTTGGTCTTTTTGGGTGAAGGGACCGGTGACCGCTCCTGTGAGTGGTTGAGCGGGCGTCCCAATGTCCGCGACCAATTTTGTCAACCCGGACTCGAGCCTTTTATTTATTGCCGGGAAACTTGCAACAATTGTGGACCGGCAGAGGGCGACACGACGGATGCTCCGACCGCAATGCCTCCGCCGACGAGTACACCCACATCCGAGCCAGTCATGATTACAGCCTTTCCCACCCGGGCACCAACAAGTGCTCCGACGCCGGCGCCCACCTTGGTAGCGACGATAGCACCAGTGATCATTGCCACGCCGGCTCCCATCGCAGTTGCCACCCCACCTCCTACCGGAACGTCGACGGTTGGGTCGGCTATTACGAATGCCGCACCAGCTTCCACAGCCGCAGCCCTGCAAAATCCGGCTTCAGCGCAGTCGAGAGCCTTGGCGTTCGTAGAAAACTCTAGTGCGACAGCGGCTTTGCCAGAAAGCCGCATCGTACAGCAGTTTGCTTTGGCCACGCTGGGCTTTCGAACCGGCCTAGCGGGACGGCGACTCGAGGAAGCTCGTCAATTGCAATCTTGGATGAGCGGCACGAACGAGTGTTCCTGGTCGGGTGTCACGTGTGATAGCCAATCTAGTGTCATCGGAATCAATTTAAGTGGACGAGGCTTGAGGGCATCGTTGCCTGGGGAATTGGCCATGCTGTCGAATTTGGTCACACTCGATGTGAGCGTCAACGAATTTTTTGGTACGATACCCTCGGATTTCGGTAGAATGGTTAATCTGCGTACACTACGCATGGAACAGAATGGTTTGACGGGAAGCATTCCGAATACCATGCGGAATATGCGTATTCTACGTGAGTTTTATGTGGAATGGAACGAGCTCACCGGAGATTTTCCGAACGATGTAGTTTTGGCGATGTCGAGTTTGGAGGAATTAAGTATCTACCATAACAATATCGCAGGGTCTGTTTCGGACGCGGTTTGTGCTCTGGGCCTGGACGAATTGTGGATTGACTGTCGTGAGGTCAATGTCGAAATTGGTTGCTGGACCCGGTGTTTCTTTCAATGTGGAGGGTCCACTGGTGTCGCTTGTTAA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Ptc.424 | translated coding region predicted by ESTScan from UniGene Ptc.424 | RSVEKRTKTQVLPRVLPRPNVRQAGRHAPFLFLSPNTSRSYIHFRLFDTRTMNRSYGMAAHGADGPDSDDDDTMSDVFTMDGDYTLSSGMPPPPATERSHTHIPLTVESPSATRSQGLNPYSPRTDAAAYDVSTDDGSVSGIESMSGLMTTDGSYFQNDTVVHDDEMSFQAKVQAETNKILSEYDMEEDLNRSGDSKLGRYHNRTSVSAPRQAAPPMTPTSSMDDDSDSEAARARPDNQTRHSKKDPSSAVGPPPVSSNGARGSSVRHSVRSLRKQSNNKPEAPTKPAVYDLSTPETSPTNRKAPVTPQTKTPQRSNTTARPPNMIVVGSSTTTESSEKNTRAAAAIGASAAPTRKGWLGSRLSFVIIVLSIILLTAICVAVGALVAAGNRNSDSSSASSSEGGSSNEIGAPPVDFLPFLPPTTAPIASEIPSTGSPTPEPSAWNRDVCGIDDPDKLVFLGEGTGDRSCEWLSGRPNVRDQFCQPGLEPFIYCRETCNNCGPAEGDTTDAPTAMPPPTSTPTSEPVMITAFPTRAPTSAPTPAPTLVATIAPVIIATPAPIAVATPPPTGTSTVGSAITNAAPASTAAALQNPASAQSRALAFVENSSATAALPESRIVQQFALATLGFRTGLAGRRLEEARQLQSWMSGTNECSWSGVTCDSQSSVIGINLSGRGLRASLPGELAMLSNLVTLDVSVNEFFGTIPSDFGRMVNLRTLRMEQNGLTGSIPNTMRNMRILREFYVEWNELTGDFPNDVVLAMSSLEELSIYHNNIAGSVSDAVCALGLENCGLTVVRSMSKLVAGPGVSFNVEGPLVSLVX |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| Seg: seg | 67-81 | seg | DSDDDDTMSDVFTMD |
| Seg: seg | 215-229 | seg | PPMTPTSSMDDDSDS |
| Seg: seg | 247-258 | seg | PSSAVGPPPVSS |
| Seg: seg | 330-338 | seg | SSTTTESSE |
| Seg: seg | 343-352 | seg | AAAAIGASAA |
| Seg: seg | 363-375 | seg | LSFVIIVLSIILL |
| Seg: seg | 387-407 | seg | AAGNRNSDSSSASSSEGGSSN |
| Seg: seg | 506-525 | seg | DTTDAPTAMPPPTSTPTSEP |
| HMMPanther: PTHR24420 | 525-778 | FAMILY NOT NAMED,FAMILY NOT NAMED | PVMITAFPTRAPTSAPTPAPTLVATIAPVIIATPAPIAVATPPPTGTSTVGSAITNAAPASTAAALQNPASAQSRALAFVENSSATAALPESRIVQQFALATLGFRTGLAGRRLEEARQLQSWMSGTNECSWSGVTCDSQSSVIGINLSGRGLRASLPGELAMLSNLVTLDVSVNEFFGTIPSDFGRMVNLRTLRMEQNGLTGSIPNTMRNMRILREFYVEWNELTGDFPNDVVLAMSSLEELSIYHNNIAGSV |
| Seg: seg | 529-598 | seg | TAFPTRAPTSAPTPAPTLVATIAPVIIATPAPIAVATPPPTGTSTVGSAITNAAPASTAAALQNPASAQS |
| superfamily: SSF52058 | 616-785 | L domain-like,LRR | SRIVQQFALATLGFRTGLAGRRLEEARQLQSWMSGTNECSWSGVTCDSQSSVIGINLSGRGLRASLPGELAMLSNLVTLDVSVNEFFGTIPSDFGRMVNLRTLRMEQNGLTGSIPNTMRNMRILREFYVEWNELTGDFPNDVVLAMSSLEELSIYHNNIAGSVSDAVCAL |
| HMMPfam: PF08263 IPR013210
|
627-662 | LRRNT_2 Leucine-rich repeat-containing N-terminal domain,
|
LGFRTGLAGRRLEEARQLQSWMSGTNECSWSGVTCD |
| Gene3D: G3DSA:3.80.10.10 | 645-785 | no description | QSWMSGTNECSWSGVTCDSQSSVIGINLSGRGLRASLPGELAMLSNLVTLDVSVNEFFGTIPSDFGRMVNLRTLRMEQNGLTGSIPNTMRNMRILREFYVEWNELTGDFPNDVVLAMSSLEELSIYHNNIAGSVSDAVCAL |
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