PRGDB00080690 (Ptc.453)

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Ptc.453
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 219110522 (XM_002176977)
Gene Class N
Domain Type NBS
Gene Species Dimocarpus longan

Comment?

Phaeodactylum tricornutum CCAP 1055

DNA Sequence

ATGGAAGACGTTGAATCCGGAGACGGTACCGGGAACTACGGCAACGAAATCGCGGACGACAGTAACAATAATAACCCTCGGGTACTGGATCGCGACGACAGCGAGCTCGACAAGCATGATGATCCCTTTGCTCCACGCGAAGGCAAAACCCTCACCTGGACTAACATTCACATGACCTTGGCTGGAAAGGGTGAGGAGTCCGAACGCAAACTTCTCGATAACGTGTGGGGCGAGGTACCGGAGAAGCAAACGACGGCGGTCATGGGTCCTTCCGGAGCCGGCAAAACGTCGCTTTTGAATATTCTCGCCGGTCGCGCCAGTTCGCACGGACGCGTCAAGATCGAAAGCGACGTTCGTCTCAACAACTATTCCGTCGATCCGACCAACATCAAGGTCCGCAAGCTGATTGCCTTTGTTGCGCAGGACGATTCCTTGCAGGTCACTTCGACGCCCCGGGAGGCCATTCGCTTTTCCGCCAAGTTGCGTCTACCCAGAGCTACGACAGATCACCAGCTCGACAAACTCACCGACCGCATGATCACCGAACTAGGACTCACGGCCTGTGCCGATTCCATTGTCGGAGGGGAACTCATCAAGGGAATTTCCGGAGGAGAACGTAAGCGTACTTCGGTCGGGGTCGAACTCGTCGTCAAGCCTGCCTTGGTCTTTCTCGACGAGCCTACCAGTGGTTTGGATTCCTTCAGTGCCGTGCAGTTATGTCAGGTTCTCAAAAAGGTAGCCAACGCCGGATCGTCCGTTTTCTTTACGATCCATCAGCCTTCTTCGGAAATCTTCAATTCCTTCGACCATTTGATCCTCATGAACAAGGGACGCGTCATGTACACCGGCTCGGTCCACGGAGTGCCGGACTTCTTTGCCTCTCGAGGACATCCCAATCCTCCCAACTACAATCCGGCCGATTTCATCATGAACGTTGCACAGTCGGTGCCCGTCAAGCAACTCAACGAGGATGGATTCTTCCCCACCGACGAACGCAAAATGGGGGAAGCCTTTGTTCCGGATGACGGAAAGGATGCTCTCGGGATTACCGTTACCCGTCGCACTGCTCGTGGTGTTGACGTGTACGACACCAAACCCCCCGGTCTCGTGACGCAGGTCAAGCTGCTCTTTACTCGTGAAATTAACAACTTGCGTCGGGATGTTACGGCTCTTGGTGCCCGCTTTGGCCTCACCATCTTTTTGGGAGTCTTGGTTGGTATCATCTTTTTGGATGTGGGCAAGACTGATCCCACTGTCGCGGTCAATCTGCAGTCCCACTTTGGTGCCCTCATTATGGTCCTCCTTATGAGCATGTTCGGGACCGCCCAACCCGCCCTGTTGTCCTTTCCCGAAGAACGCCCCGTCTTTTTGCGCGAGTATTCCACCAATCACTATTCGGTCATTTCTTACTTTTTATCGCGATTGACCATGGAAGCCGTGGTGACTGGACTTCAGGTATTTGTGCAGGCCATTATCACGTACTTTATGATCGGCTTTCAACTGTCCTTTGGTTTGTTTTGGGCCGTTACGTACTCTCTCGCCATGGCCAGTACGGCGTTGGCCGTGTTGCTGGGTTGTTCCGTGGAGGATCCCAAACTAGCACAGGAAATGTTGCCGATTTTGTTTGTGCCGCAGATGCTCTTTGCCGGCTTCTTTGTCGTGCCTGATTTGATTCCTGTCTGGTTGCGCTGGGCTCGTTACCTTTGTACCTTGACCTACGCCATTCGCATTCTCTTGGTGGAAGAATTCTACGATTGCGATCCTGGTAATCCAGAAGCCAACAATGCTTGCAACGACTTGGTCTCGAACATTGACGCCGACCCGGACGAGACGTGGTGGAATTGGTTGGTGCTCGTAGCGCTGTTCGGGGTCGCCCGTATTTTTGCTCTCTATATTCTCCGTCAAAAGTCCACCAAATTCTTTTAA


Protein sequences

Name Description Sequence
Ptc.453 translated coding region predicted by ESTScan from UniGene Ptc.453

MEDVESGDGTGNYGNEIADDSNNNNPRVLDRDDSELDKHDDPFAPREGKTLTWTNIHMTLAGKGEESERKLLDNVWGEVPEKQTTAVMGPSGAGKTSLLNILAGRASSHGRVKIESDVRLNNYSVDPTNIKVRKLIAFVAQDDSLQVTSTPREAIRFSAKLRLPRATTDHQLDKLTDRMITELGLTACADSIVGGELIKGISGGERKRTSVGVELVVKPALVFLDEPTSGLDSFSAVQLCQVLKKVANAGSSVFFTIHQPSSEIFNSFDHLILMNKGRVMYTGSVHGVPDFFASRGHPNPPNYNPADFIMNVAQSVPVKQLNEDGFFPTDERKMGEAFVPDDGKDALGITVTRRTARGVDVYDTKPPGLVTQVKLLFTREINNLRRDVTALGARFGLTIFLGVLVGIIFLDVGKTDPTVAVNLQSHFGALIMVLLMSMFGTAQPALLSFPEERPVFLREYSTNHYSVISYFLSRLTMEAVVTGLQVFVQAIITYFMIGFQLSFGLFWAVTYSLAMASTALAVLLGCSVEDPKLAQEMLPILFVPQMLFAGFFVVPDLIPVWLRWARYLCTLTYAIRILLVEEFYDCDPGNPEANNACNDLVSNIDADPDETWWNWLVLVALFGVARIFALYILRQKSTKFF

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR19241
5-634 PTHR19241,ATP-BINDING CASSETTE TRANSPORTER

ESGDGTGNYGNEIADDSNNNNPRVLDRDDSELDKHDDPFAPREGKTLTWTNIHMTLAGKGEESERKLLDNVWGEVPEKQTTAVMGPSGAGKTSLLNILAGRASSHGRVKIESDVRLNNYSVDPTNIKVRKLIAFVAQDDSLQVTSTPREAIRFSAKLRLPRATTDHQLDKLTDRMITELGLTACADSIVGGELIKGISGGERKRTSVGVELVVKPALVFLDEPTSGLDSFSAVQLCQVLKKVANAGSSVFFTIHQPSSEIFNSFDHLILMNKGRVMYTGSVHGVPDFFASRGHPNPPNYNPADFIMNVAQSVPVKQLNEDGFFPTDERKMGEAFVPDDGKDALGITVTRRTARGVDVYDTKPPGLVTQVKLLFTREINNLRRDVTALGARFGLTIFLGVLVGIIFLDVGKTDPTVAVNLQSHFGALIMVLLMSMFGTAQPALLSFPEERPVFLREYSTNHYSVISYFLSRLTMEAVVTGLQVFVQAIITYFMIGFQLSFGLFWAVTYSLAMASTALAVLLGCSVEDPKLAQEMLPILFVPQMLFAGFFVVPDLIPVWLRWARYLCTLTYAIRILLVEEFYDCDPGNPEANNACNDLVSNIDADPDETWWNWLVLVALFGVARIFALYILR

Gene3D: G3DSA:3.40.50.300
50-286 G3DSA:3.40.50.300

TLTWTNIHMTLAGKGEESERKLLDNVWGEVPEKQTTAVMGPSGAGKTSLLNILAGRASSHGRVKIESDVRLNNYSVDPTNIKVRKLIAFVAQDDSLQVTSTPREAIRFSAKLRLPRATTDHQLDKLTDRMITELGLTACADSIVGGELIKGISGGERKRTSVGVELVVKPALVFLDEPTSGLDSFSAVQLCQVLKKVANAGSSVFFTIHQPSSEIFNSFDHLILMNKGRVMYTGSVH

ProfileScan: PS50893
IPR003439
51-301 ABC_TRANSPORTER_2
ABC transporter-like

LTWTNIHMTLAGKGEESERKLLDNVWGEVPEKQTTAVMGPSGAGKTSLLNILAGRASSHGRVKIESDVRLNNYSVDPTNIKVRKLIAFVAQDDSLQVTSTPREAIRFSAKLRLPRATTDHQLDKLTDRMITELGLTACADSIVGGELIKGISGGERKRTSVGVELVVKPALVFLDEPTSGLDSFSAVQLCQVLKKVANAGSSVFFTIHQPSSEIFNSFDHLILMNKGRVMYTGSVHGVPDFFASRGHPNPP

superfamily: SSF52540
55-283 SSF52540

NIHMTLAGKGEESERKLLDNVWGEVPEKQTTAVMGPSGAGKTSLLNILAGRASSHGRVKIESDVRLNNYSVDPTNIKVRKLIAFVAQDDSLQVTSTPREAIRFSAKLRLPRATTDHQLDKLTDRMITELGLTACADSIVGGELIKGISGGERKRTSVGVELVVKPALVFLDEPTSGLDSFSAVQLCQVLKKVANAGSSVFFTIHQPSSEIFNSFDHLILMNKGRVMYTG

HMMSmart: SM00382
IPR003593
81-278 AAA,NBS
ATPase, AAA+ type, core

EKQTTAVMGPSGAGKTSLLNILAGRASSHGRVKIESDVRLNNYSVDPTNIKVRKLIAFVAQDDSLQVTSTPREAIRFSAKLRLPRATTDHQLDKLTDRMITELGLTACADSIVGGELIKGISGGERKRTSVGVELVVKPALVFLDEPTSGLDSFSAVQLCQVLKKVANAGSSVFFTIHQPSSEIFNSFDHLILMNKGR

HMMPfam: PF00005
IPR003439
96-229 ABC_tran
ABC transporter-like

TSLLNILAGRASSHGRVKIESDVRLNNYSVDPTNIKVRKLIAFVAQDDSLQVTSTPREAIRFSAKLRLPRATTDHQLDKLTDRMITELGLTACADSIVGGELIKGISGGERKRTSVGVELVVKPALVFLDEPTS

HMMPfam: PF01061
IPR013525
371-580 ABC2_membrane
ABC-2 type transporter

TQVKLLFTREINNLRRDVTALGARFGLTIFLGVLVGIIFLDVGKTDPTVAVNLQSHFGALIMVLLMSMFGTAQPALLSFPEERPVFLREYSTNHYSVISYFLSRLTMEAVVTGLQVFVQAIITYFMIGFQLSFGLFWAVTYSLAMASTALAVLLGCSVEDPKLAQEMLPILFVPQMLFAGFFVVPDLIPVWLRWARYLCTLTYAIRILLV






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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