PRGDB00080695 (Ptc.692)

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Ptc.692
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 219117148 (XM_002179333)
Gene Class N
Domain Type NBS
Gene Species Dimocarpus longan

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Phaeodactylum tricornutum CCAP 1055

DNA Sequence

ATGGATACGGGATCTACTGCGGTGAACAAAATCCTCGACAAGAACGAAATGTCAGGACCATTCCAAAGTCGACAAGGGAAGAGCCTGAAATGGAGTAACGTTAACATGACGTTGGTGGCGAAAGGCAAGAGCCCGGAAAAGAAAATTTTACAAAATGTTTGGGGCGAAGCTGGCAACGAAACGACAGCAATTATGGGACCCTCTGGGTCAGGGAAAACTTCCCTATTGAACGTCCTGTCGGGGAGGGCCCGAAACCTTGGGCGGTTGAAAGTCACTGCTGATGTTAAGCTGGACGGCAAGTCCGTCAACCCGACTGATGTGTCAGTTCGTCAGCACATTGCCTTTGTAGAGCAAGACGACACCCTTTGCATTTCAGCCACGCCTAGGGAAGCCATTTTCTTTTCTGCCAAGTTACGCTTGCCCAAAAGCTACATGGACGAACAATTGCATACATTGACGGACCGTATGCTAACGGAGCTTGGTCTCCAAGGTTGTGCCGATACGATCATCGGAGGAACGCTGGCGAAGGGTATATCCGGGGGCGAGCGTAAGCGCACCAGCGTCGGAGTCGAGCTTGTGACGCAACCATCTATCGTATTCCTAGACGAGCCAACATCTGGACTTGATAGCTTTTCTGCATTACAGCTTGTTCAGGTTTTGGACAAGGTGGCTAGAGCAGGAGCCAGCGTTCTCTTTACTATCCATCAGCCTCAGTCAGACATCTTCGACATGTTTGATCGCATGATTCTCATGAATAAGGGGCAAGTCATGTACCAGGGTGATGTTGAAAACATGACGGACTACTTTGAGTCTCGTGGACACCCTCTTCCACCAAAGTACAACCCTGCGGACTACGTGATGATTGTGGCCCAAACCATTCCAGAAAAAGAACTCAAAGAGGCAGGCTTCTTCTCCGAAAGAAAAGAGGCTGATTCTAGTTCTGAACGATCCGTTTTGGAATACGATACAAAAAATGAACACAATAGACATGTGGGGGCCTGGATACAGGTGAAATACTTGGTGCAACGTGATTTTCAGAGCCTTGTGAGAGTTAAAACGATTTTGGGGGCGCGCCTCGCCCTGACCGGATTCATGACCGTGTTAACTGGATTTATCTTTTGGCAAGTAGGCGACGGAAACCTTGAGGATCTGGTGGAGGTGCAAAGCATTTTTGGTGGTCTTGTCACGGCTTGTATGCTTGCCATGTTTGGTTCGGCCATGCCAACTCTGATTGTCTTTCCAGAGGAACGTCCTGTCTTCTTGAGAGAGTACGCCACAAATCACTATTCCGTTGTTTCGTACTTCTTATCAAGGCTTCTGCTGGAAGCAATTTTGACAGCGATTCAAATGGTAGTATTGGCAATCTTGAGTTACTTTATGATGGCGCTCAGCCTCGACTTTGGTTTGTATTTCATCACTCTATACACTTTGGCAATGTCCAGTACCGCATTGGCCATGGTTATTGGTTCGACTGTGGAGGATCCTAAGATTGCTGTCGAGTTCTTACCCATAACTCTGGTTCCACAGATTATGTTTGCCGGTTTCTTTATTGCTCCAGATCTCATTCCTGTTTGGCTACGCTGGCTCCAATACATTATGCCACTGAGCTACGCCGTGAATTTGGTCATGGACTATGAGTTCAATCAAGACTGCGGCTCCGAACAAGCAAATACCAACTGCCAAAACATTTTAGATATTGCTGGCTCAGACTCGGATGACATATGGTGGTATTGGTTGGCACTTGTGGCTATATTTGTTGTACTTCGGTCTGTGGCACTTGTATGCTTGAAGCGCAAGGCAGAAAAGTAG


Protein sequences

Name Description Sequence
Ptc.692 translated coding region predicted by ESTScan from UniGene Ptc.692

MDTGSTAVNKILDKNEMSGPFQSRQGKSLKWSNVNMTLVAKGKSPEKKILQNVWGEAGNETTAIMGPSGSGKTSLLNVLSGRARNLGRLKVTADVKLDGKSVNPTDVSVRQHIAFVEQDDTLCISATPREAIFFSAKLRLPKSYMDEQLHTLTDRMLTELGLQGCADTIIGGTLAKGISGGERKRTSVGVELVTQPSIVFLDEPTSGLDSFSALQLVQVLDKVARAGASVLFTIHQPQSDIFDMFDRMILMNKGQVMYQGDVENMTDYFESRGHPLPPKYNPADYVMIVAQTIPEKELKEAGFFSERKEADSSSERSVLEYDTKNEHNRHVGAWIQVKYLVQRDFQSLVRVKTILGARLALTGFMTVLTGFIFWQVGDGNLEDLVEVQSIFGGLVTACMLAMFGSAMPTLIVFPEERPVFLREYATNHYSVVSYFLSRLLLEAILTAIQMVVLAILSYFMMALSLDFGLYFITLYTLAMSSTALAMVIGSTVEDPKIAVEFLPITLVPQIMFAGFFIAPDLIPVWLRWLQYIMPLSYAVNLVMDYEFNQDCGSEQANTNCQNILDIAGSDSDDIWWYWLALVAIFVVLRSVALVCLKRKAEK

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR19241
22-599 PTHR19241,ATP-BINDING CASSETTE TRANSPORTER

QSRQGKSLKWSNVNMTLVAKGKSPEKKILQNVWGEAGNETTAIMGPSGSGKTSLLNVLSGRARNLGRLKVTADVKLDGKSVNPTDVSVRQHIAFVEQDDTLCISATPREAIFFSAKLRLPKSYMDEQLHTLTDRMLTELGLQGCADTIIGGTLAKGISGGERKRTSVGVELVTQPSIVFLDEPTSGLDSFSALQLVQVLDKVARAGASVLFTIHQPQSDIFDMFDRMILMNKGQVMYQGDVENMTDYFESRGHPLPPKYNPADYVMIVAQTIPEKELKEAGFFSERKEADSSSERSVLEYDTKNEHNRHVGAWIQVKYLVQRDFQSLVRVKTILGARLALTGFMTVLTGFIFWQVGDGNLEDLVEVQSIFGGLVTACMLAMFGSAMPTLIVFPEERPVFLREYATNHYSVVSYFLSRLLLEAILTAIQMVVLAILSYFMMALSLDFGLYFITLYTLAMSSTALAMVIGSTVEDPKIAVEFLPITLVPQIMFAGFFIAPDLIPVWLRWLQYIMPLSYAVNLVMDYEFNQDCGSEQANTNCQNILDIAGSDSDDIWWYWLALVAIFVVLRSVALVCLKRK

Gene3D: G3DSA:3.40.50.300
27-269 G3DSA:3.40.50.300

KSLKWSNVNMTLVAKGKSPEKKILQNVWGEAGNETTAIMGPSGSGKTSLLNVLSGRARNLGRLKVTADVKLDGKSVNPTDVSVRQHIAFVEQDDTLCISATPREAIFFSAKLRLPKSYMDEQLHTLTDRMLTELGLQGCADTIIGGTLAKGISGGERKRTSVGVELVTQPSIVFLDEPTSGLDSFSALQLVQVLDKVARAGASVLFTIHQPQSDIFDMFDRMILMNKGQVMYQGDVENMTDYF

ProfileScan: PS50893
IPR003439
29-278 ABC_TRANSPORTER_2
ABC transporter-like

LKWSNVNMTLVAKGKSPEKKILQNVWGEAGNETTAIMGPSGSGKTSLLNVLSGRARNLGRLKVTADVKLDGKSVNPTDVSVRQHIAFVEQDDTLCISATPREAIFFSAKLRLPKSYMDEQLHTLTDRMLTELGLQGCADTIIGGTLAKGISGGERKRTSVGVELVTQPSIVFLDEPTSGLDSFSALQLVQVLDKVARAGASVLFTIHQPQSDIFDMFDRMILMNKGQVMYQGDVENMTDYFESRGHPLPP

superfamily: SSF52540
36-260 SSF52540

MTLVAKGKSPEKKILQNVWGEAGNETTAIMGPSGSGKTSLLNVLSGRARNLGRLKVTADVKLDGKSVNPTDVSVRQHIAFVEQDDTLCISATPREAIFFSAKLRLPKSYMDEQLHTLTDRMLTELGLQGCADTIIGGTLAKGISGGERKRTSVGVELVTQPSIVFLDEPTSGLDSFSALQLVQVLDKVARAGASVLFTIHQPQSDIFDMFDRMILMNKGQVMYQG

HMMSmart: SM00382
IPR003593
58-255 AAA,NBS
ATPase, AAA+ type, core

GNETTAIMGPSGSGKTSLLNVLSGRARNLGRLKVTADVKLDGKSVNPTDVSVRQHIAFVEQDDTLCISATPREAIFFSAKLRLPKSYMDEQLHTLTDRMLTELGLQGCADTIIGGTLAKGISGGERKRTSVGVELVTQPSIVFLDEPTSGLDSFSALQLVQVLDKVARAGASVLFTIHQPQSDIFDMFDRMILMNKGQ

HMMPfam: PF00005
IPR003439
73-206 ABC_tran
ABC transporter-like

TSLLNVLSGRARNLGRLKVTADVKLDGKSVNPTDVSVRQHIAFVEQDDTLCISATPREAIFFSAKLRLPKSYMDEQLHTLTDRMLTELGLQGCADTIIGGTLAKGISGGERKRTSVGVELVTQPSIVFLDEPTS

HMMPfam: PF01061
IPR013525
336-547 ABC2_membrane
ABC-2 type transporter

QVKYLVQRDFQSLVRVKTILGARLALTGFMTVLTGFIFWQVGDGNLEDLVEVQSIFGGLVTACMLAMFGSAMPTLIVFPEERPVFLREYATNHYSVVSYFLSRLLLEAILTAIQMVVLAILSYFMMALSLDFGLYFITLYTLAMSSTALAMVIGSTVEDPKIAVEFLPITLVPQIMFAGFFIAPDLIPVWLRWLQYIMPLSYAVNLVMDYEF






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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