PRGDB00080728 (Ptc.17159)

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Ptc.17159
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 187010559 (CU716311)
Gene Class Unknown
Domain Type
Gene Species Dimocarpus longan

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CU716311 Phaeodactylum tricornutum Aerated culture of predominantly triradiate cells Phaeodactylum tricornutum cDNA clone KS0ASA18YP12 5', mRNA sequence

DNA Sequence

CTGTCATTCCTGTACGACAACAAACACAGCATTACAGCCTTCAGGAAGCGAAATGGATACGGGATCTACTGCGGTGAACAAAATCCTCGACAAGAACGAAATGTCAGGACCATTCCAAAGTCGACAAGGGAAGAGCCTGAAATGGAGTAACGTTTATATGACGTTGGTGGCGAAAGGCAAGAGCCCGGAAAAGAAAATTTTACAAAATGTTTGGGGTGAAGCTGGCAACGAAACGACAGCAATTATGGGACCCTCTGGGTCAGGGAAAACTTCCCTATTGAACGTCCTGTCGGGGAGGGCCCGAAACCTTGGGCGGTTGAAAGTCACTGCTGATGTTAAGCTGGACGGCAAGCCCGTCAACCCGACTGATGTGTCAGTTCGTCAGCACATTGCCTTTGTAGAGCAAGACGACACCCTTTGCATTTCAGCCACACCTAGGGAAGCCATTTTCTTTTCTGCCAAGTTACGCTTGCCCAAAAGCTACATGGACGAACAATTGCATACACTGACGGACCGTATGCTAACGGAGCTTGGTCTCCAAGGTTGTGCCGATACGATCATCGGAGGGACGCTGGCAAAGGGTATATCCGGGGGCGAGCGTAAGCGCACCAGCGTCGGAGTCGAGCTTGTGACGCAACCATCTATCGTATTCCTAGACGAGCCAACATCTGGACCTGATAGCTTTTCTGCATTACAGCTTGTTCGGTTTTGGACAAGGTGGCTAGAGCAGGAGCCAGCGTTCTCTTTACATCCATCAGCCTCAGTCAGACATCTTCCAAATGTTTGATCCCATGGATTCTCAAGGATAAGGGGCAGTCCTGTACAAGGGGGATGGTTGAAACCTTACCGAATACTTTGAGTCCCGGGGGACCCCTCTTCCCCCCAAATACAACCCTGCCGAACACCGTGTGGATTGTGGGCCAACCCATTTCCCAAAAAAGACTCCAAAAAGGCGGGTTTCTTTCCTCaaaaaaaaaagagctgattcatatttcggaacaatcccttttgaaaatttgaaacagaaaatgaaaaccctaaagaaaattgggggcccccgaaaacggggtaaaAAACATCATGGCCAACGTTATTTTCCAAAACCCGCGGGGAAGAAATAAACACAAATTTCGGGGGGCGGCGCCTTcccccccgccccccGGGTTTATTAGATGAGCGCGGTTTTATAGCTCGttttttttttctttttttGTTTCTAAAGATATAGGGGCAAACACAAGAAGATCACCTTCTTTTGTAGGGGTGATACCTA


Protein sequences

Name Description Sequence
Ptc.17159 translated coding region predicted by ESTScan from UniGene Ptc.17159

XCHSCTTTNTALQPSGSEMDTGSTAVNKILDKNEMSGPFQSRQGKSLKWSNVYMTLVAKGKSPEKKILQNVWGEAGNETTAIMGPSGSGKTSLLNVLSGRARNLGRLKVTADVKLDGKPVNPTDVSVRQHIAFVEQDDTLCISATPREAIFFSAKLRLPKSYMDEQLHTLTDRMLTELGLQGCADTIIGGTLAKGISGGERKRTSVGVELVTQPSIVFLDEPTSGPDSFSALQLVRFWTRWLEQEPAFSLHPSASVRHLPNV

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR19241
40-237 FAMILY NOT NAMED,ATP-BINDING CASSETTE TRANSPORTER

QSRQGKSLKWSNVYMTLVAKGKSPEKKILQNVWGEAGNETTAIMGPSGSGKTSLLNVLSGRARNLGRLKVTADVKLDGKPVNPTDVSVRQHIAFVEQDDTLCISATPREAIFFSAKLRLPKSYMDEQLHTLTDRMLTELGLQGCADTIIGGTLAKGISGGERKRTSVGVELVTQPSIVFLDEPTSGPDSFSALQLVRF

Gene3D: G3DSA:3.40.50.300
46-241 no description

SLKWSNVYMTLVAKGKSPEKKILQNVWGEAGNETTAIMGPSGSGKTSLLNVLSGRARNLGRLKVTADVKLDGKPVNPTDVSVRQHIAFVEQDDTLCISATPREAIFFSAKLRLPKSYMDEQLHTLTDRMLTELGLQGCADTIIGGTLAKGISGGERKRTSVGVELVTQPSIVFLDEPTSGPDSFSALQLVRFWTRW

superfamily: SSF52540
54-243 P-loop containing nucleoside triphosphate hydrolases

MTLVAKGKSPEKKILQNVWGEAGNETTAIMGPSGSGKTSLLNVLSGRARNLGRLKVTADVKLDGKPVNPTDVSVRQHIAFVEQDDTLCISATPREAIFFSAKLRLPKSYMDEQLHTLTDRMLTELGLQGCADTIIGGTLAKGISGGERKRTSVGVELVTQPSIVFLDEPTSGPDSFSALQLVRFWTRWLE

HMMPfam: PF00005
IPR003439
91-224 ABC_tran
ABC transporter-like

TSLLNVLSGRARNLGRLKVTADVKLDGKPVNPTDVSVRQHIAFVEQDDTLCISATPREAIFFSAKLRLPKSYMDEQLHTLTDRMLTELGLQGCADTIIGGTLAKGISGGERKRTSVGVELVTQPSIVFLDEPTS






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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