PRGDB00081125 (Pvr.40607)

Pvr.40607
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	304449123 (HO244846)
Gene Class	Unknown
Domain Type	Ser-Thr Kinase
Gene Species	Saccharum hybrid cultivar
	Comment?

CCTW1480.b1 CCTW Panicum virgatum Carthage normalized leaf Panicum virgatum cDNA clone CCTW1480 5', mRNA sequence

DNA Sequence

TCATGATTCTCTACAAACTCTCATATTAAGCCAAAATCAGTTTGAAGGATCTATACCAAATTCTTCTGGACGATGATATGAATGCCCTTTTTGGCGACTTTGGTATTGCAAGTTTTTACCAAAATTCTTCGTCAACATCAACTGGCGGTTTTATCACTTCATCACTCGGCGTCAAAGGGACTATAGGATATATTGCTCCAGAGTATGCGGGGGGTGCTCGCCATCCAGCAACTTCCGACGATGTTTATAGTTTTGGGATAATACTGCTTGAAATGATGACCGGAAGGAGGCCAACGGATCCTATGTTCAAGGACGGAACCAGCATTGTCAACTATGTGAAGGGGAACTTTCCACATGAAATATTGCACATCATTGATGCTCATCTAACAGAAGAATGCAAGAACTTTGCTGAAGTAAAGAAGGCATCAGAAAATGTCGTACATCAATGCTTGGTATCCGTGCTAGAAGTTGCATTTTCCTGCACGAAACCAATACCAAGCGAACGAATGGACATGAAAGAAATAGCCAGCAGAATGCATGCAATCCAAACGTCATACGTGTCAATGGGGAAGAAGAGGGTAATTATTATGCCTTCCTAGAATTGGAGTGACTCGAAACGTCGTAATCCCACAAACACATAGTATTGTGACTATAAAATAGAAAACTACCTGAAGTGGTTTAAAATTATGGTTGTATTATTGGGAACGTGATGCATATATATACGCTTCAACATGCTGTATCCGTCTGCATCAGTTTACACTGTAATAAATCTACACC

Protein sequences

Name	Description	Sequence
Pvr.40607	translated coding region predicted by ESTScan from UniGene Pvr.40607	XMILYKLSYXAKISLKDLYQILLDDDMNALFGDFGIASFYQNSSSTSTGGFITSSLGVKGTIGYIAPEYAGGARHPATSDDVYSFGIILLEMMTGRRPTDPMFKDGTSIVNYVKGNFPHEILHIIDAHLTEECKNFAEVKKASENVVHQCLVSVLEVAFSCTKPIPSERMDMKEIASRMHAIQTSYVSMGKKRVIIMPS

Domains

Domain	Start-End	Description	Sequence
ProfileScan: PS50011 IPR000719	1-183	PROTEIN_KINASE_DOM Protein kinase, catalytic domain	XMILYKLSYXAKISLKDLYQILLDDDMNALFGDFGIASFYQNSSSTSTGGFITSSLGVKGTIGYIAPEYAGGARHPATSDDVYSFGIILLEMMTGRRPTDPMFKDGTSIVNYVKGNFPHEILHIIDAHLTEECKNFAEVKKASENVVHQCLVSVLEVAFSCTKPIPSERMDMKEIASRMHAIQ
superfamily: SSF56112 IPR011009	21-179	Protein kinase-like (PK-like) Protein kinase-like domain	ILLDDDMNALFGDFGIASFYQNSSSTSTGGFITSSLGVKGTIGYIAPEYAGGARHPATSDDVYSFGIILLEMMTGRRPTDPMFKDGTSIVNYVKGNFPHEILHIIDAHLTEECKNFAEVKKASENVVHQCLVSVLEVAFSCTKPIPSERMDMKEIASRM
HMMPfam: PF00069 IPR017442	21-175	Pkinase,Ser-thr Serine/threonine-protein kinase-like domain	ILLDDDMNALFGDFGIASFYQNSSSTSTGGFITSSLGVKGTIGYIAPEYAGGARHPATSDDVYSFGIILLEMMTGRRPTDPMFKDGTSIVNYVKGNFPHEILHIIDAHLTEECKNFAEVKKASENVVHQCLVSVLEVAFSCTKPIPSERMDMKEI
Gene3D: G3DSA:1.10.510.10	21-179	no description	ILLDDDMNALFGDFGIASFYQNSSSTSTGGFITSSLGVKGTIGYIAPEYAGGARHPATSDDVYSFGIILLEMMTGRRPTDPMFKDGTSIVNYVKGNFPHEILHIIDAHLTEECKNFAEVKKASENVVHQCLVSVLEVAFSCTKPIPSERMDMKEIASRM
HMMPanther: PTHR24420	21-187	FAMILY NOT NAMED,FAMILY NOT NAMED	ILLDDDMNALFGDFGIASFYQNSSSTSTGGFITSSLGVKGTIGYIAPEYAGGARHPATSDDVYSFGIILLEMMTGRRPTDPMFKDGTSIVNYVKGNFPHEILHIIDAHLTEECKNFAEVKKASENVVHQCLVSVLEVAFSCTKPIPSERMDMKEIASRMHAIQTSYV
HMMPanther: PTHR24420:SF474	21-187	SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED	ILLDDDMNALFGDFGIASFYQNSSSTSTGGFITSSLGVKGTIGYIAPEYAGGARHPATSDDVYSFGIILLEMMTGRRPTDPMFKDGTSIVNYVKGNFPHEILHIIDAHLTEECKNFAEVKKASENVVHQCLVSVLEVAFSCTKPIPSERMDMKEIASRMHAIQTSYV
Seg: seg	43-57	seg	SSSTSTGGFITSSLG

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Analyses

Blast

Blast matches against Reference R-Genes. Show