PRGDB00144809 (AT4G24440.2)

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AT4G24440.2
Gene Type Putative_R-Genes,_predicted_from_Pythozome
GenBank
Gene Class Unknown
Domain Type
Gene Species Arabidopsis thaliana

Comment?

transcription initiation factor IIA gamma chain, putative, expressed (best arabidopsis hit)

DNA Sequence

ATGGCGACGTTTGAGCTGTACAGGAGATCGACGATCGGGATGTGTCTGACGGAGACTTTGGACGAGATGGTTCAGAGCGGTACGCTGAGCCCTGAGCTAGCTATCCAAGTCCTTGTTCAATTTGACAAGTCCATGACTGAAGCTCTGGAGAGCCAAGTGAAGACCAAGGTGTCCATCAAGGGACACCTGCACACTTACAGGTTCTGTGACAATGTCTGGACCTTCATATTACAGGACGCAATGTTCAAGAGTGACGATCGTCAAGAGAATGTGAGCCGGGTGAAGATAGTGGCATGTGATTCCAAGCTGCTCACACAGTGA


Protein sequences

Name Description Sequence
AT4G24440.2 transcription initiation factor IIA gamma chain, putative, expressed (best arabidopsis hit)

MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIKGHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ*

Domains

Domain Start-End Description Sequence

HMMPIR: PIRSF009415
IPR003194
1-106 Transcription initiation factor IIA, gamma subunit
Transcription initiation factor IIA, gamma subunit

MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIKGHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ

HMMPanther: PTHR10966
IPR003194
1-103 TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2
Transcription initiation factor IIA, gamma subunit

MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIKGHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKL

BlastProDom: PD009224
IPR015872
1-50 T2AG_ARATH_Q39236;
Transcription initiation factor IIA, gamma subunit

MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALE

Gene3D: G3DSA:1.10.287.190
IPR015872
2-54 no description
Transcription initiation factor IIA, gamma subunit

ATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVK

HMMPfam: PF02268
IPR015872
3-50 TFIIA_gamma_N
Transcription initiation factor IIA, gamma subunit

TFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALE

superfamily: SSF47396
IPR009083
4-54 Transcription factor IIA (TFIIA), alpha-helical domain
Transcription factor IIA, helical

FELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVK

superfamily: SSF50784
IPR009088
52-102 Transcription factor IIA (TFIIA), beta-barrel domain
Transcription factor IIA, beta-barrel

QVKTKVSIKGHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSK

HMMPfam: PF02751
IPR015871
52-101 TFIIA_gamma_C
Transcription initiation factor IIA, gamma subunit

QVKTKVSIKGHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDS

Gene3D: G3DSA:2.30.18.10
IPR009088
55-105 no description
Transcription factor IIA, beta-barrel

TKVSIKGHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLT






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