PRGDB00150846 (Cre18.g748600.t1.2)
| Cre18.g748600.t1.2 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_Pythozome |
| GenBank | |
| Gene Class | N |
| Domain Type | NBS |
| Gene Species | Chlamydomonas reinhardtii |
DNA Sequence
ATGGCAGACTACAAGAATGCCTTCATTGCTGAGCCCAACGCCATCGGCGTTGAGGGCGTGTTCGGCATCGTTCCCACGCGTGAAGCGTTCGCCCTCCAGGAAAATGACCTGGCGACGCGGCTGTTCCCGACCTCAGCCCAGTACACGGATGAGATTGGCTCCAGTGCCCCCTCCTCGGCCGTCCTGTCGCGCATGAGTCAGGCGCAGGTACATCGCCTGCACCACAGGCTGAGTCAGCTCCCCCCCGATGAGGCGGCGCTGATGGAAGCTGCGGTGGATGAGGCGGTGCACAAGCGGCTGCGGCCGCTGAAGGAGCTGCAGGAGCTGGACAAGAAGGTGCAGGCTGCGGACGAGCAGCTCAAGGAGTACGGCGGCTTCACTGCGGCCATGGGCGCGCGCATGCGGGCTCTGGGCGTGTCGATGCCCTCCGTCACGCTCGAGTACCGCGACCTGGCTGTGCACACGGACGCACTGGTGGGCAGTGCCGGCATACCCTCCGTGGGCAACTCCCTGCTGGGCATATTCAAGCGGCTGGTGTGTGTCAAGAGCAACACAGTGGACCACCCCATCCTGGACGGCCTCAGCGGCGTGCTGCGCCCCGGCCGCCCCACGCTGCTGCTGGGGCCGCCCTCCTCCGGCAAGTCCAGCCTGCTCAAGCTGTCTGACGACGAGCTGCTCAAGCTGATGGACGAGACGTACGACAGCGGCATCCGTACACTGGGCGCCATGCGGGCCATGGGCATCGCACACACCGCCAACACGCCCGTGGGGGACGCCATGCTGCGCGGCGTGAGCGGAGGCGAGCGCAAGCGCGTCACCACTGCCGAGATGCTGGTGGGCCCGCGCCGCGTGCTGCTGCTTGACGAGATCAGCACCGGCCTGGACAGCGCCACACTCTACTCCATTGCCGACCTGCTGTGCAAGTTCTGCCGGCTGTTCGGCACCACGGTGCTGGTCAGCCTGCTGCAGCCTCCGCCCGAGGTGTACTTCCTGTTTGACGACGTCGTGCTCACCAGCGCCGGCCACATCACCTACCACGGCCCGCCGGCGGGCGCGCTGCCCTTCTACCAGCAGCTGGGGTTCGTGTGCCCGCCGCGCAAGGACGTCCCCTCCTTCCTGCAGGAGATCACCACCGCCTCAGGCCAGCAGGAGTACGCATCTGACGAGCTGCGCGCGCGACTGGGACTGCCCAGGCCCGGCGCCGCCGCCACCCCGGGCGTCTCCTCGCCGCCCTCTCAGAGCAAGGCCGCCGCCGCCGCCCTGGAAATTTCCAAGCCACAGGCGGTGGCGGAGGGCGCCGAAGGCGCCGCCACTGCCGCCGCCACCGCGGCGGCGGCCTGCAGCGGCGGCACTCGCTGGGTGATTCCGCCGTCTCAGGTGGCGGAGGCGTTCTGGCGGGACACGGAGGCGGGCCGCGACATGCGGAGGCTGCTGGAGCAGCCGTTCGACAAGGCCAAGGGGCACCCCGCGGCGCTGGTGCGCACCCGCTATGCGCTGGGTCACCTGGAGGCGCTGGCGGTGGTGGTGCGGCGGCAGCTGCTGCTGGTGTCGCGCGACACCATCCTCATCAAGGGGCGGCTGATGCAGGTGGTGGTGATGGGCCTCATCACCGGCTCGCTGTTCTTCCAGCTGGGCACCTCGGTCAGCGACGCGCGCGCCTACTTCGGCGTGTCCTTCCTGGCCGTCATGTTCATGGCCATGGGCGCCATGCCCGCACTGCCCGTCACACTGGCCACAAAGGGTGTGTGGGAGAAGCACCGCACCGCATACTTCTACCCCGCCTGGTGCCACGCGCTGGGTGCCAACCTGGCGCAGGTGCCCATGATGGTCGTGGACTCGCTCGCCTACTCACTCATCCTGTACTGGATGGTGGGCTACACCCCCGTGGCCGGCCAGTTCTTTGCCTTCTGGCTGGCCATGTTCTCCATGAGCCTCAACTCCAACGTGCTGTTCAGGCTGATTGCCTACGCCTCTCCGGACGCGGTGAGCGCCAACGCCTTCGGCGGCTTCGTGCTGCTCATCCTCATCGTGCTGTCCGGATTCGCCATCATCCGGGGTTGGTGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Cre18.g748600.t1.2 | pleiotropic drug resistance 2 (best arabidopsis hit) | MADYKNAFIAEPNAIGVEGVFGIVPTREAFALQENDLATRLFPTSAQYTDEIGSSAPSSAVLSRMSQAQVHRLHHRLSQLPPDEAALMEAAVDEAVHKRLRPLKELQELDKKVQAADEQLKEYGGFTAAMGARMRALGVSMPSVTLEYRDLAVHTDALVGSAGIPSVGNSLLGIFKRLVCVKSNTVDHPILDGLSGVLRPGRPTLLLGPPSSGKSSLLKLSDDELLKLMDETYDSGIRTLGAMRAMGIAHTANTPVGDAMLRGVSGGERKRVTTAEMLVGPRRVLLLDEISTGLDSATLYSIADLLCKFCRLFGTTVLVSLLQPPPEVYFLFDDVVLTSAGHITYHGPPAGALPFYQQLGFVCPPRKDVPSFLQEITTASGQQEYASDELRARLGLPRPGAAATPGVSSPPSQSKAAAAALEISKPQAVAEGAEGAATAAATAAAACSGGTRWVIPPSQVAEAFWRDTEAGRDMRRLLEQPFDKAKGHPAALVRTRYALGHLEALAVVVRRQLLLVSRDTILIKGRLMQVVVMGLITGSLFFQLGTSVSDARAYFGVSFLAVMFMAMGAMPALPVTLATKGVWEKHRTAYFYPAWCHALGANLAQVPMMVVDSLAYSLILYWMVGYTPVAGQFFAFWLAMFSMSLNSNVLFRLIAYASPDAVSANAFGGFVLLILIVLSGFAIIRGW* |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR19241:SF90 | 1-685 | PREDICTED PROTEIN,PREDICTED PROTEIN | MADYKNAFIAEPNAIGVEGVFGIVPTREAFALQENDLATRLFPTSAQYTDEIGSSAPSSAVLSRMSQAQVHRLHHRLSQLPPDEAALMEAAVDEAVHKRLRPLKELQELDKKVQAADEQLKEYGGFTAAMGARMRALGVSMPSVTLEYRDLAVHTDALVGSAGIPSVGNSLLGIFKRLVCVKSNTVDHPILDGLSGVLRPGRPTLLLGPPSSGKSSLLKLSDDELLKLMDETYDSGIRTLGAMRAMGIAHTANTPVGDAMLRGVSGGERKRVTTAEMLVGPRRVLLLDEISTGLDSATLYSIADLLCKFCRLFGTTVLVSLLQPPPEVYFLFDDVVLTSAGHITYHGPPAGALPFYQQLGFVCPPRKDVPSFLQEITTASGQQEYASDELRARLGLPRPGAAATPGVSSPPSQSKAAAAALEISKPQAVAEGAEGAATAAATAAAACSGGTRWVIPPSQVAEAFWRDTEAGRDMRRLLEQPFDKAKGHPAALVRTRYALGHLEALAVVVRRQLLLVSRDTILIKGRLMQVVVMGLITGSLFFQLGTSVSDARAYFGVSFLAVMFMAMGAMPALPVTLATKGVWEKHRTAYFYPAWCHALGANLAQVPMMVVDSLAYSLILYWMVGYTPVAGQFFAFWLAMFSMSLNSNVLFRLIAYASPDAVSANAFGGFVLLILIVLSGFAIIR |
| HMMPanther: PTHR19241 | 1-685 | FAMILY NOT NAMED,ATP-BINDING CASSETTE TRANSPORTER | MADYKNAFIAEPNAIGVEGVFGIVPTREAFALQENDLATRLFPTSAQYTDEIGSSAPSSAVLSRMSQAQVHRLHHRLSQLPPDEAALMEAAVDEAVHKRLRPLKELQELDKKVQAADEQLKEYGGFTAAMGARMRALGVSMPSVTLEYRDLAVHTDALVGSAGIPSVGNSLLGIFKRLVCVKSNTVDHPILDGLSGVLRPGRPTLLLGPPSSGKSSLLKLSDDELLKLMDETYDSGIRTLGAMRAMGIAHTANTPVGDAMLRGVSGGERKRVTTAEMLVGPRRVLLLDEISTGLDSATLYSIADLLCKFCRLFGTTVLVSLLQPPPEVYFLFDDVVLTSAGHITYHGPPAGALPFYQQLGFVCPPRKDVPSFLQEITTASGQQEYASDELRARLGLPRPGAAATPGVSSPPSQSKAAAAALEISKPQAVAEGAEGAATAAATAAAACSGGTRWVIPPSQVAEAFWRDTEAGRDMRRLLEQPFDKAKGHPAALVRTRYALGHLEALAVVVRRQLLLVSRDTILIKGRLMQVVVMGLITGSLFFQLGTSVSDARAYFGVSFLAVMFMAMGAMPALPVTLATKGVWEKHRTAYFYPAWCHALGANLAQVPMMVVDSLAYSLILYWMVGYTPVAGQFFAFWLAMFSMSLNSNVLFRLIAYASPDAVSANAFGGFVLLILIVLSGFAIIR |
| ProfileScan: PS50893 IPR003439
|
176-365 | ABC_TRANSPORTER_2 ABC transporter-like
|
KRLVCVKSNTVDHPILDGLSGVLRPGRPTLLLGPPSSGKSSLLKLSDDELLKLMDETYDSGIRTLGAMRAMGIAHTANTPVGDAMLRGVSGGERKRVTTAEMLVGPRRVLLLDEISTGLDSATLYSIADLLCKFCRLFGTTVLVSLLQPPPEVYFLFDDVVLTSAGHITYHGPPAGALPFYQQLGFVCPP |
| Gene3D: G3DSA:3.40.50.300 | 187-220 | no description | DHPILDGLSGVLRPGRPTLLLGPPSSGKSSLLKL |
| superfamily: SSF52540 | 187-390 | P-loop containing nucleoside triphosphate hydrolases | DHPILDGLSGVLRPGRPTLLLGPPSSGKSSLLKLSDDELLKLMDETYDSGIRTLGAMRAMGIAHTANTPVGDAMLRGVSGGERKRVTTAEMLVGPRRVLLLDEISTGLDSATLYSIADLLCKFCRLFGTTVLVSLLQPPPEVYFLFDDVVLTSAGHITYHGPPAGALPFYQQLGFVCPPRKDVPSFLQEITTASGQQEYASDEL |
| HMMSmart: SM00382 IPR003593
|
200-342 | ATPases associated with a variety of cellula,NBS AAA+ ATPase domain
|
PGRPTLLLGPPSSGKSSLLKLSDDELLKLMDETYDSGIRTLGAMRAMGIAHTANTPVGDAMLRGVSGGERKRVTTAEMLVGPRRVLLLDEISTGLDSATLYSIADLLCKFCRLFGTTVLVSLLQPPPEVYFLFDDVVLTSAGH |
| Seg: seg | 205-228 | seg | LLLGPPSSGKSSLLKLSDDELLKL |
| Gene3D: G3DSA:3.40.50.300 | 241-350 | no description | GAMRAMGIAHTANTPVGDAMLRGVSGGERKRVTTAEMLVGPRRVLLLDEISTGLDSATLYSIADLLCKFCRLFGTTVLVSLLQPPPEVYFLFDDVVLTSAGHITYHGPPA |
| Seg: seg | 416-420 | seg | AAAAA |
| Seg: seg | 430-446 | seg | AEGAEGAATAAATAAAA |
| Seg: seg | 504-516 | seg | ALAVVVRRQLLLV |
| HMMPfam: PF01061 IPR013525
|
505-683 | ABC2_membrane ABC-2 type transporter
|
LAVVVRRQLLLVSRDTILIKGRLMQVVVMGLITGSLFFQLGTSVSDARAYFGVSFLAVMFMAMGAMPALPVTLATKGVWEKHRTAYFYPAWCHALGANLAQVPMMVVDSLAYSLILYWMVGYTPVAGQFFAFWLAMFSMSLNSNVLFRLIAYASPDAVSANAFGGFVLLILIVLSGFAI |
List of Contributions
There has not been any contribution yet.
