PRGDB00150870 (Cucsa.010860.2)

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Cucsa.010860.2
Gene Type Putative_R-Genes,_predicted_from_Pythozome
GenBank
Gene Class Unknown
Domain Type Ser-Thr Kinase
Gene Species Pennisetum glaucum

Comment?

Protein kinase superfamily protein (best arabidopsis hit)

DNA Sequence

ATGGGGTCCTGCCTTAGTGCTAGAATTAAAGCTGAGAGCCCTCTTCACAACGGGTTGAGCTCCAGGTATGCAAGAGATGGAAATGATAAAGGGAATTCAACCAGCAAGTCATCTGTCTCGACCCCTCGGACCCCTCGAACGGAGGGCGAGATCTTGCAGTCCTCCAACTTGAAAAACTTCTCCTACAATGAGCTTAAAGCTGCCACCCGAAACTTCCGTCCTGATAGTGTATTGGGTGAGGGTGGATTTGGTTCTGTATTTAAGGGGTGGATTGATGAACAGTCCTTTGCAGTTACGAAGCCCGGGACTGGCTTAGTCATTGCAGTAAAAAGGCTCAACCAGGAAGGTTTCCAGGGTCATAGAGAATGGCTGACAGAAATTGACTATCTAGGCCAGCTGCATCATCCTAATCTTGTGAGATTGATTGGCTTTTGCTTAGAGGATGAGCATCGACTTCTTGTATATGAATTTATGCCTCGTGGCAGCTTGGAAAATCATCTATTTAGGAGGAGTTCTCACTTTCAACCTCTATCATGGAGTCTCCGATTGAAAGTTGCTCTTGGTGCTGCTAAAGGTCTAGCTTTTCTACATAGCGATGAAGCGAAAGTAATATACCGGGACTTTAAAAGCTCTAATATCTTGCTGGATTCGGACTATAATGCAAAACTCTCTGATTTTGGATTAGCCAAAGATGGGCCTACAGGTGACAGAAGCTATGTTTCTACAAGGGTAATGGGAACATTTGGCTATGCAGCTCCTGAATATATGATCACAGCCAAGAGTGATGTGTATAGCTTTGGAGTTGTTCTTCTCGAGATCCTATCAGGGAGACGAGCTATAGACAAAAACCGACCATCTGGAGAACACAACCTTGTGGAATGGGCAAAACCTTACCTCACTAGCAAACGAAGAGTACTTCAAATGTTGGACGCACGAATTGAAGGCCAATATTCGACCGGAGGAGCACTAAAAGCGGCTAAACTTGCCATTCAATGTATATCGACAGAACCTAAGTTAAGACCGAACATGAATGCAGTCGTGAAAGCATTGGAACAACTTCAGGATTCGAGTGAAACGAGTGGATCAAGGGGAACTTTAAGCGAACCCTTGAACACATCCAGCCAAGGCAGTGGCTCCACAAATAACAAACCTGTTTCTTATCCTAGACCATCAGCTTCAGTACTAAATCTATAG


Protein sequences

Name Description Sequence
Cucsa.010860.2 Protein kinase superfamily protein (best arabidopsis hit)

MGSCLSARIKAESPLHNGLSSRYARDGNDKGNSTSKSSVSTPRTPRTEGEILQSSNLKNFSYNELKAATRNFRPDSVLGEGGFGSVFKGWIDEQSFAVTKPGTGLVIAVKRLNQEGFQGHREWLTEIDYLGQLHHPNLVRLIGFCLEDEHRLLVYEFMPRGSLENHLFRRSSHFQPLSWSLRLKVALGAAKGLAFLHSDEAKVIYRDFKSSNILLDSDYNAKLSDFGLAKDGPTGDRSYVSTRVMGTFGYAAPEYMITAKSDVYSFGVVLLEILSGRRAIDKNRPSGEHNLVEWAKPYLTSKRRVLQMLDARIEGQYSTGGALKAAKLAIQCISTEPKLRPNMNAVVKALEQLQDSSETSGSRGTLSEPLNTSSQGSGSTNNKPVSYPRPSASVLNL*

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR24420
42-360 FAMILY NOT NAMED,FAMILY NOT NAMED

PRTPRTEGEILQSSNLKNFSYNELKAATRNFRPDSVLGEGGFGSVFKGWIDEQSFAVTKPGTGLVIAVKRLNQEGFQGHREWLTEIDYLGQLHHPNLVRLIGFCLEDEHRLLVYEFMPRGSLENHLFRRSSHFQPLSWSLRLKVALGAAKGLAFLHSDEAKVIYRDFKSSNILLDSDYNAKLSDFGLAKDGPTGDRSYVSTRVMGTFGYAAPEYMITAKSDVYSFGVVLLEILSGRRAIDKNRPSGEHNLVEWAKPYLTSKRRVLQMLDARIEGQYSTGGALKAAKLAIQCISTEPKLRPNMNAVVKALEQLQDSSETS

superfamily: SSF56112
IPR011009
42-358 Protein kinase-like (PK-like)
Protein kinase-like domain

PRTPRTEGEILQSSNLKNFSYNELKAATRNFRPDSVLGEGGFGSVFKGWIDEQSFAVTKPGTGLVIAVKRLNQEGFQGHREWLTEIDYLGQLHHPNLVRLIGFCLEDEHRLLVYEFMPRGSLENHLFRRSSHFQPLSWSLRLKVALGAAKGLAFLHSDEAKVIYRDFKSSNILLDSDYNAKLSDFGLAKDGPTGDRSYVSTRVMGTFGYAAPEYMITAKSDVYSFGVVLLEILSGRRAIDKNRPSGEHNLVEWAKPYLTSKRRVLQMLDARIEGQYSTGGALKAAKLAIQCISTEPKLRPNMNAVVKALEQLQDSSE

HMMPanther: PTHR24420:SF861
42-360 SUBFAMILY NOT NAMED

PRTPRTEGEILQSSNLKNFSYNELKAATRNFRPDSVLGEGGFGSVFKGWIDEQSFAVTKPGTGLVIAVKRLNQEGFQGHREWLTEIDYLGQLHHPNLVRLIGFCLEDEHRLLVYEFMPRGSLENHLFRRSSHFQPLSWSLRLKVALGAAKGLAFLHSDEAKVIYRDFKSSNILLDSDYNAKLSDFGLAKDGPTGDRSYVSTRVMGTFGYAAPEYMITAKSDVYSFGVVLLEILSGRRAIDKNRPSGEHNLVEWAKPYLTSKRRVLQMLDARIEGQYSTGGALKAAKLAIQCISTEPKLRPNMNAVVKALEQLQDSSETS

Gene3D: G3DSA:3.30.200.20
53-144 no description

QSSNLKNFSYNELKAATRNFRPDSVLGEGGFGSVFKGWIDEQSFAVTKPGTGLVIAVKRLNQEGFQGHREWLTEIDYLGQLHHPNLVRLIGF

HMMSmart: SM00219
IPR020635
72-350 Tyrosine kinase, catalytic domain
Tyrosine-protein kinase, catalytic domain

FRPDSVLGEGGFGSVFKGWIDEQSFAVTKPGTGLVIAVKRLNQEGFQGHREWLTEIDYLGQLHHPNLVRLIGFCLEDEHRLLVYEFMPRGSLENHLFRRSSHFQPLSWSLRLKVALGAAKGLAFLHSDEAKVIYRDFKSSNILLDSDYNAKLSDFGLAKDGPTGDRSYVSTRVMGTFGYAAPEYMITAKSDVYSFGVVLLEILSGRRAIDKNRPSGEHNLVEWAKPYLTSKRRVLQMLDARIEGQYSTGGALKAAKLAIQCISTEPKLRPNMNAVVKAL

HMMSmart: SM00220
IPR002290
72-353 Serine/Threonine protein kinases, catalytic
Serine/threonine- / dual-specificity protein kinas

FRPDSVLGEGGFGSVFKGWIDEQSFAVTKPGTGLVIAVKRLNQEGFQGHREWLTEIDYLGQLHHPNLVRLIGFCLEDEHRLLVYEFMPRGSLENHLFRRSSHFQPLSWSLRLKVALGAAKGLAFLHSDEAKVIYRDFKSSNILLDSDYNAKLSDFGLAKDGPTGDRSYVSTRVMGTFGYAAPEYMITAKSDVYSFGVVLLEILSGRRAIDKNRPSGEHNLVEWAKPYLTSKRRVLQMLDARIEGQYSTGGALKAAKLAIQCISTEPKLRPNMNAVVKALEQL

ProfileScan: PS50011
IPR000719
72-353 PROTEIN_KINASE_DOM
Protein kinase, catalytic domain

FRPDSVLGEGGFGSVFKGWIDEQSFAVTKPGTGLVIAVKRLNQEGFQGHREWLTEIDYLGQLHHPNLVRLIGFCLEDEHRLLVYEFMPRGSLENHLFRRSSHFQPLSWSLRLKVALGAAKGLAFLHSDEAKVIYRDFKSSNILLDSDYNAKLSDFGLAKDGPTGDRSYVSTRVMGTFGYAAPEYMITAKSDVYSFGVVLLEILSGRRAIDKNRPSGEHNLVEWAKPYLTSKRRVLQMLDARIEGQYSTGGALKAAKLAIQCISTEPKLRPNMNAVVKALEQL

HMMPfam: PF07714
IPR001245
76-350 Pkinase_Tyr
Serine-threonine/tyrosine-protein kinase catalytic

SVLGEGGFGSVFKGWIDEQSFAVTKPGTGLVIAVKRLNQEGFQGHREWLTEIDYLGQLHHPNLVRLIGFCLEDEHRLLVYEFMPRGSLENHLFRRSSHFQPLSWSLRLKVALGAAKGLAFLHSDEAKVIYRDFKSSNILLDSDYNAKLSDFGLAKDGPTGDRSYVSTRVMGTFGYAAPEYMITAKSDVYSFGVVLLEILSGRRAIDKNRPSGEHNLVEWAKPYLTSKRRVLQMLDARIEGQYSTGGALKAAKLAIQCISTEPKLRPNMNAVVKAL

PatternScan: PS00107
IPR017441
78-110 PROTEIN_KINASE_ATP
Protein kinase, ATP binding site

LGEGGFGSVFKGWIDEQSFAVTKPGTGLVIAVK

Gene3D: G3DSA:1.10.510.10
145-354 no description

CLEDEHRLLVYEFMPRGSLENHLFRRSSHFQPLSWSLRLKVALGAAKGLAFLHSDEAKVIYRDFKSSNILLDSDYNAKLSDFGLAKDGPTGDRSYVSTRVMGTFGYAAPEYMITAKSDVYSFGVVLLEILSGRRAIDKNRPSGEHNLVEWAKPYLTSKRRVLQMLDARIEGQYSTGGALKAAKLAIQCISTEPKLRPNMNAVVKALEQLQ

Seg: seg
181-194 seg

LRLKVALGAAKGLA

PatternScan: PS00108
IPR008271
203-215 PROTEIN_KINASE_ST
Serine/threonine-protein kinase, active site

VIYRDFKSSNILL

Seg: seg
371-382 seg

NTSSQGSGSTNN






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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