PRGDB00150877 (Cucsa.012030.1)
| Cucsa.012030.1 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_Pythozome |
| GenBank | |
| Gene Class | RLP |
| Domain Type | Ser-Thr Kinase, LRR |
| Gene Species | Pennisetum glaucum |
DNA Sequence
ATGAGGAAACCCCATTTCGGTTTTGGGGTTTTTCTCTTGCTTTTCCCCTTGTTTCTGCACTTTCTGGGGTTCTCTGTTTTTGCTCAGCCGGCCGCCGGTGGTGCTGGTGATGGGTCAGTCATGAATCTCTTGAAGAATAGTGTTGGAGCTCCGAGTTCTCTTGGATGGACTGGTTCGGATTACTGTCAATGGAACCATGTCAAATGTGATTCTCAGAGCCGAGTTGTTAAAATCCAAATTGGGAATCAAAACCTCAAAGGATCACTTCCGAAGGAGCTTTTCAGTCTCTCCGCGTTAGTGCAATTAGAGGTACAGAGCAACCAGTTGGGTGGGCCCTTCCCTAACCTCGCCGATTCTCTTCAGATACTTCTAGCGCATGATAATCTTTTTACTTCCATGCCTGCTGATTTCTTCGCCAAGAAGTCGGCTCTGCAAACCATAGATATCGACAACAATCCCTTCTCGGCGTGGCAGATTCCTGATAATATTCGAGATGCATCTGCGTTACAGCAATTATCGGCCAATCGTGTCAACATCACCGGTATAATCCCTGGAATTTTCGATGGCGCAACGTTTCCGACTCTTACGAACTTGCATTTGGCGGGTAATTTTCTTGAAGGGGAATTACCAGCAAGTCTTGCAGGTTCTTCGATTCAGTCGCTTTGGTTGAATGGACAACAGAGTAGTTCTAAGTTAAACGGTTCAATCGCCATATTGCAAAATATGACTAATCTGCAGGAGGTTTGGTTGCATATGAACCAGTTTTCAGGTCCTTTGCCGGATTTCTCCAATCTTCAGGGATTAGCGAAATTGAGTTTGAGGGATAATCAGCTTACGGGTATTGTTCCTTCATCCTTGGTAAATTTGAAATCTCTCATGGTTGTGAATTTGACCAATAATTTGCTTCAAGGACCAACTCCTGCTTTTGATCCTAATGTTCAGCTGGATATGAAACCACAAACGAACAAGTTTTGCTTGGATTCTCCGGGTGAACCATGTGATCCCCGAGTGAATGCTTTGTTATCAGTTGCAGAGTCCATGGGTTTTCCCACAGCCTTTGCACAAGGCTGGGCAGGGAACGATCCCTGTCAGGGTTTCAAGGGTATTTCATGTATTGGCAACCCTACAAACATAAGTGTAATTAACTTAAAAAATATGGGTCTTGCAGGCTCTATTTCTCCTAGCTTTTCATTGCTTACATCCGTGCAAAAGTTGTTTCTCTCTAACAATTTTCTATCTGGCACAATACCGAATGAACTTGCGACTATGCCTAGTCTTACAGAATTAGATGTCTCCAATAACAGGCTTCATGGGAAAGTTCCAGTCTTCAGGAAGAATGTGATTGTCAACACCCAGGGGAACCCGGATATTGGGAAAGATAATGCCAGTCCTCCCGTACCTGGTTCTCCCACCGGGAGATCGCCCTCTGATGGATCAGGTGACTCAGCTGGTAATGATGAAAAGAAAAGTAATGCTGGAGTGGTTGTTGGCGCTATAATTGGTGTTATTGTTGGCCTTCTTGTTGTTGGGACTGTGATTTTCTTTTTGTGCAAGAGGAAGAAGCGACGTGGTAATAGAGTGCAGAGTCCAAATACTGTGGTGGTACATCCTAGCCATTCTGGAGACCAAAATTCGGTGAAGATTACGATTACAGAGGCTAGATCCGATGGAAGTGCGCCCGAAACCAGCAGAGTTCCTATTGCTGGACCTAGTGACGTGCATGTAGTAGAGGCAGGAAACCTTGTTATCTCGATTCAAGTTTTAAGGAGTGTAACTAATAATTTTAGCCCTGAAAATATATTGGGGAAAGGGGGTTTTGGAACTGTTTACAAGGGAGAATTGCACGATGGTACGATGATTGCTGTGAAGAGAATGGAGTCTGGAGTCATAGGTGAGAAGGGTTTGAATGAATTCAAGGCTGAGATTGCAGTTCTTACAAAGGTTCGCCATAGAAACTTGGTTGCGCTTCTTGGGTATTGCTTGGATGGAAATGAGCGGCTTCTCGTTTATGAATACATGCCCCAGGGGACGTTTAGTAGGTTTCTGTTTAACTGGAAAGAAGAAGGTATTAGACCCCTTGAATGGAAAAGAAGGTTGATTGTTGTCTTGGATGTGGCCAGAGGTGTTGAGTATTTGCATAGTTTAGCACATCAGAGCTTTATCCATCGTGATCTCAAACCATCAAACATTCTTCTCGGAGATGATTTACGGGCTAAAGTAGCTGACTTTGGGTTGGTTCGTCTTGCTCCTGAAGGGAAGGCATCGATTGAAACAAGACTAGCGGGAACATTTGGCTATCTTGCCCCTGAATATGCAGTAACTGGACGAGTTACAACCAAGGTCGATGTTTATAGCTTTGGGGTGATCCTCATGGAGATGATATCTGGTAGAAAAGCAATCGACGAGAGCCAGCCAGAAGAAAGTTTGCACCTTGTATCATGGTTCCGCAGAATGCACATTAACAAGGACACTTTCTCAAAGGCCATAGACCCTTCAATCGACATAGACGAGGAGACCCTTGTCAGCATCAACACAGTTGCAGACTTGGCTGGTCATTGCTGTGCAAGAGAGCCATACCAACGGCCCGACATGGGTCATGCAGTCAACGTGCTTTCGTCTCTAGTCGATGTCTGGAAGCCTACAGAACCAGACTCCGAAGAGAATTTGGGGATTGATCTTGAGCTTTCATTACCACAGGCCCTTAGGAAATGGCAGGCATTTGAAGGAAATAGCAATGTGGACATGTCCTCCTCTTCATCATCATTCCTTGCCAGTGGTGACAATACACAAACCAGCATACCGAACCGGCCATCTGGTTTCGCAAATTCATTTACCTCTGTTGACGCACGGTGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Cucsa.012030.1 | transmembrane kinase 1 (best arabidopsis hit) | MRKPHFGFGVFLLLFPLFLHFLGFSVFAQPAAGGAGDGSVMNLLKNSVGAPSSLGWTGSDYCQWNHVKCDSQSRVVKIQIGNQNLKGSLPKELFSLSALVQLEVQSNQLGGPFPNLADSLQILLAHDNLFTSMPADFFAKKSALQTIDIDNNPFSAWQIPDNIRDASALQQLSANRVNITGIIPGIFDGATFPTLTNLHLAGNFLEGELPASLAGSSIQSLWLNGQQSSSKLNGSIAILQNMTNLQEVWLHMNQFSGPLPDFSNLQGLAKLSLRDNQLTGIVPSSLVNLKSLMVVNLTNNLLQGPTPAFDPNVQLDMKPQTNKFCLDSPGEPCDPRVNALLSVAESMGFPTAFAQGWAGNDPCQGFKGISCIGNPTNISVINLKNMGLAGSISPSFSLLTSVQKLFLSNNFLSGTIPNELATMPSLTELDVSNNRLHGKVPVFRKNVIVNTQGNPDIGKDNASPPVPGSPTGRSPSDGSGDSAGNDEKKSNAGVVVGAIIGVIVGLLVVGTVIFFLCKRKKRRGNRVQSPNTVVVHPSHSGDQNSVKITITEARSDGSAPETSRVPIAGPSDVHVVEAGNLVISIQVLRSVTNNFSPENILGKGGFGTVYKGELHDGTMIAVKRMESGVIGEKGLNEFKAEIAVLTKVRHRNLVALLGYCLDGNERLLVYEYMPQGTFSRFLFNWKEEGIRPLEWKRRLIVVLDVARGVEYLHSLAHQSFIHRDLKPSNILLGDDLRAKVADFGLVRLAPEGKASIETRLAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMEMISGRKAIDESQPEESLHLVSWFRRMHINKDTFSKAIDPSIDIDEETLVSINTVADLAGHCCAREPYQRPDMGHAVNVLSSLVDVWKPTEPDSEENLGIDLELSLPQALRKWQAFEGNSNVDMSSSSSSFLASGDNTQTSIPNRPSGFANSFTSVDAR* |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR24420:SF467 | 1-935 | SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED | MRKPHFGFGVFLLLFPLFLHFLGFSVFAQPAAGGAGDGSVMNLLKNSVGAPSSLGWTGSDYCQWNHVKCDSQSRVVKIQIGNQNLKGSLPKELFSLSALVQLEVQSNQLGGPFPNLADSLQILLAHDNLFTSMPADFFAKKSALQTIDIDNNPFSAWQIPDNIRDASALQQLSANRVNITGIIPGIFDGATFPTLTNLHLAGNFLEGELPASLAGSSIQSLWLNGQQSSSKLNGSIAILQNMTNLQEVWLHMNQFSGPLPDFSNLQGLAKLSLRDNQLTGIVPSSLVNLKSLMVVNLTNNLLQGPTPAFDPNVQLDMKPQTNKFCLDSPGEPCDPRVNALLSVAESMGFPTAFAQGWAGNDPCQGFKGISCIGNPTNISVINLKNMGLAGSISPSFSLLTSVQKLFLSNNFLSGTIPNELATMPSLTELDVSNNRLHGKVPVFRKNVIVNTQGNPDIGKDNASPPVPGSPTGRSPSDGSGDSAGNDEKKSNAGVVVGAIIGVIVGLLVVGTVIFFLCKRKKRRGNRVQSPNTVVVHPSHSGDQNSVKITITEARSDGSAPETSRVPIAGPSDVHVVEAGNLVISIQVLRSVTNNFSPENILGKGGFGTVYKGELHDGTMIAVKRMESGVIGEKGLNEFKAEIAVLTKVRHRNLVALLGYCLDGNERLLVYEYMPQGTFSRFLFNWKEEGIRPLEWKRRLIVVLDVARGVEYLHSLAHQSFIHRDLKPSNILLGDDLRAKVADFGLVRLAPEGKASIETRLAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMEMISGRKAIDESQPEESLHLVSWFRRMHINKDTFSKAIDPSIDIDEETLVSINTVADLAGHCCAREPYQRPDMGHAVNVLSSLVDVWKPTEPDSEENLGIDLELSLPQALRKWQAFEGNSNVDMSSSSSSFLASGDNTQTSIPN |
| HMMPanther: PTHR24420 | 1-935 | FAMILY NOT NAMED,FAMILY NOT NAMED | MRKPHFGFGVFLLLFPLFLHFLGFSVFAQPAAGGAGDGSVMNLLKNSVGAPSSLGWTGSDYCQWNHVKCDSQSRVVKIQIGNQNLKGSLPKELFSLSALVQLEVQSNQLGGPFPNLADSLQILLAHDNLFTSMPADFFAKKSALQTIDIDNNPFSAWQIPDNIRDASALQQLSANRVNITGIIPGIFDGATFPTLTNLHLAGNFLEGELPASLAGSSIQSLWLNGQQSSSKLNGSIAILQNMTNLQEVWLHMNQFSGPLPDFSNLQGLAKLSLRDNQLTGIVPSSLVNLKSLMVVNLTNNLLQGPTPAFDPNVQLDMKPQTNKFCLDSPGEPCDPRVNALLSVAESMGFPTAFAQGWAGNDPCQGFKGISCIGNPTNISVINLKNMGLAGSISPSFSLLTSVQKLFLSNNFLSGTIPNELATMPSLTELDVSNNRLHGKVPVFRKNVIVNTQGNPDIGKDNASPPVPGSPTGRSPSDGSGDSAGNDEKKSNAGVVVGAIIGVIVGLLVVGTVIFFLCKRKKRRGNRVQSPNTVVVHPSHSGDQNSVKITITEARSDGSAPETSRVPIAGPSDVHVVEAGNLVISIQVLRSVTNNFSPENILGKGGFGTVYKGELHDGTMIAVKRMESGVIGEKGLNEFKAEIAVLTKVRHRNLVALLGYCLDGNERLLVYEYMPQGTFSRFLFNWKEEGIRPLEWKRRLIVVLDVARGVEYLHSLAHQSFIHRDLKPSNILLGDDLRAKVADFGLVRLAPEGKASIETRLAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMEMISGRKAIDESQPEESLHLVSWFRRMHINKDTFSKAIDPSIDIDEETLVSINTVADLAGHCCAREPYQRPDMGHAVNVLSSLVDVWKPTEPDSEENLGIDLELSLPQALRKWQAFEGNSNVDMSSSSSSFLASGDNTQTSIPN |
| Seg: seg | 4-24 | seg | PHFGFGVFLLLFPLFLHFLGF |
| superfamily: SSF52058 | 27-317 | L domain-like,LRR | FAQPAAGGAGDGSVMNLLKNSVGAPSSLGWTGSDYCQWNHVKCDSQSRVVKIQIGNQNLKGSLPKELFSLSALVQLEVQSNQLGGPFPNLADSLQILLAHDNLFTSMPADFFAKKSALQTIDIDNNPFSAWQIPDNIRDASALQQLSANRVNITGIIPGIFDGATFPTLTNLHLAGNFLEGELPASLAGSSIQSLWLNGQQSSSKLNGSIAILQNMTNLQEVWLHMNQFSGPLPDFSNLQGLAKLSLRDNQLTGIVPSSLVNLKSLMVVNLTNNLLQGPTPAFDPNVQLDM |
| HMMPfam: PF08263 IPR013210
|
37-70 | LRRNT_2 Leucine-rich repeat-containing N-terminal, type 2
|
DGSVMNLLKNSVGAPSSLGWTGSDYCQWNHVKCD |
| Gene3D: G3DSA:3.80.10.10 | 41-312 | no description | MNLLKNSVGAPSSLGWTGSDYCQWNHVKCDSQSRVVKIQIGNQNLKGSLPKELFSLSALVQLEVQSNQLGGPFPNLADSLQILLAHDNLFTSMPADFFAKKSALQTIDIDNNPFSAWQIPDNIRDASALQQLSANRVNITGIIPGIFDGATFPTLTNLHLAGNFLEGELPASLAGSSIQSLWLNGQQSSSKLNGSIAILQNMTNLQEVWLHMNQFSGPLPDFSNLQGLAKLSLRDNQLTGIVPSSLVNLKSLMVVNLTNNLLQGPTPAFDPN |
| superfamily: SSF52058 | 330-441 | L domain-like,LRR | GEPCDPRVNALLSVAESMGFPTAFAQGWAGNDPCQGFKGISCIGNPTNISVINLKNMGLAGSISPSFSLLTSVQKLFLSNNFLSGTIPNELATMPSLTELDVSNNRLHGKVP |
| HMMPfam: PF08263 IPR013210
|
337-371 | LRRNT_2 Leucine-rich repeat-containing N-terminal, type 2
|
VNALLSVAESMGFPTAFAQGWAGNDPCQGFKGISC |
| Gene3D: G3DSA:3.80.10.10 | 339-441 | no description | ALLSVAESMGFPTAFAQGWAGNDPCQGFKGISCIGNPTNISVINLKNMGLAGSISPSFSLLTSVQKLFLSNNFLSGTIPNELATMPSLTELDVSNNRLHGKVP |
| HMMPfam: PF13504 | 424-437 | LRR_7,Leucine rich repeat | PSLTELDVSNNRLH |
| Seg: seg | 492-513 | seg | AGVVVGAIIGVIVGLLVVGTVI |
| superfamily: SSF56112 IPR011009
|
567-894 | Protein kinase-like (PK-like) Protein kinase-like domain
|
IAGPSDVHVVEAGNLVISIQVLRSVTNNFSPENILGKGGFGTVYKGELHDGTMIAVKRMESGVIGEKGLNEFKAEIAVLTKVRHRNLVALLGYCLDGNERLLVYEYMPQGTFSRFLFNWKEEGIRPLEWKRRLIVVLDVARGVEYLHSLAHQSFIHRDLKPSNILLGDDLRAKVADFGLVRLAPEGKASIETRLAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMEMISGRKAIDESQPEESLHLVSWFRRMHINKDTFSKAIDPSIDIDEETLVSINTVADLAGHCCAREPYQRPDMGHAVNVLSSLVDVWKPTEPDSEENLGIDLE |
| Gene3D: G3DSA:3.30.200.20 | 582-658 | no description | VISIQVLRSVTNNFSPENILGKGGFGTVYKGELHDGTMIAVKRMESGVIGEKGLNEFKAEIAVLTKVRHRNLVALLG |
| HMMSmart: SM00219 IPR020635
|
595-871 | Tyrosine kinase, catalytic domain Tyrosine-protein kinase, catalytic domain
|
FSPENILGKGGFGTVYKGELHDGTMIAVKRMESGVIGEKGLNEFKAEIAVLTKVRHRNLVALLGYCLDGNERLLVYEYMPQGTFSRFLFNWKEEGIRPLEWKRRLIVVLDVARGVEYLHSLAHQSFIHRDLKPSNILLGDDLRAKVADFGLVRLAPEGKASIETRLAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMEMISGRKAIDESQPEESLHLVSWFRRMHINKDTFSKAIDPSIDIDEETLVSINTVADLAGHCCAREPYQRPDMGHAVNVL |
| HMMSmart: SM00220 IPR002290
|
595-875 | Serine/Threonine protein kinases, catalytic Serine/threonine- / dual-specificity protein kinas
|
FSPENILGKGGFGTVYKGELHDGTMIAVKRMESGVIGEKGLNEFKAEIAVLTKVRHRNLVALLGYCLDGNERLLVYEYMPQGTFSRFLFNWKEEGIRPLEWKRRLIVVLDVARGVEYLHSLAHQSFIHRDLKPSNILLGDDLRAKVADFGLVRLAPEGKASIETRLAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMEMISGRKAIDESQPEESLHLVSWFRRMHINKDTFSKAIDPSIDIDEETLVSINTVADLAGHCCAREPYQRPDMGHAVNVLSSLV |
| ProfileScan: PS50011 IPR000719
|
595-875 | PROTEIN_KINASE_DOM Protein kinase, catalytic domain
|
FSPENILGKGGFGTVYKGELHDGTMIAVKRMESGVIGEKGLNEFKAEIAVLTKVRHRNLVALLGYCLDGNERLLVYEYMPQGTFSRFLFNWKEEGIRPLEWKRRLIVVLDVARGVEYLHSLAHQSFIHRDLKPSNILLGDDLRAKVADFGLVRLAPEGKASIETRLAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMEMISGRKAIDESQPEESLHLVSWFRRMHINKDTFSKAIDPSIDIDEETLVSINTVADLAGHCCAREPYQRPDMGHAVNVLSSLV |
| HMMPfam: PF00069 IPR000719
|
598-869 | Pkinase,Ser-thr Protein kinase, catalytic domain
|
ENILGKGGFGTVYKGELHDGTMIAVKRMESGVIGEKGLNEFKAEIAVLTKVRHRNLVALLGYCLDGNERLLVYEYMPQGTFSRFLFNWKEEGIRPLEWKRRLIVVLDVARGVEYLHSLAHQSFIHRDLKPSNILLGDDLRAKVADFGLVRLAPEGKASIETRLAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMEMISGRKAIDESQPEESLHLVSWFRRMHINKDTFSKAIDPSIDIDEETLVSINTVADLAGHCCAREPYQRPDMGHAVN |
| PatternScan: PS00107 IPR017441
|
601-623 | PROTEIN_KINASE_ATP Protein kinase, ATP binding site
|
LGKGGFGTVYKGELHDGTMIAVK |
| Gene3D: G3DSA:1.10.510.10 | 659-869 | no description | YCLDGNERLLVYEYMPQGTFSRFLFNWKEEGIRPLEWKRRLIVVLDVARGVEYLHSLAHQSFIHRDLKPSNILLGDDLRAKVADFGLVRLAPEGKASIETRLAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMEMISGRKAIDESQPEESLHLVSWFRRMHINKDTFSKAIDPSIDIDEETLVSINTVADLAGHCCAREPYQRPDMGHAVN |
| PatternScan: PS00108 IPR008271
|
720-732 | PROTEIN_KINASE_ST Serine/threonine-protein kinase, active site
|
FIHRDLKPSNILL |
| Seg: seg | 916-921 | seg | SSSSSS |
List of Contributions
There has not been any contribution yet.
